Sand ripple volume generator for underwater acoustic models, a cellular automaton Monte-Carlo approach

Cellular automata have been successfully used to model the sand dynamics of aeolian dunes and ripples. The cellular automata Monte-Carlo model proposed in this paper expands the capabilities of cellular automata models to under water ripple formation introducing not a two dimensional matrix but two three dimensional volumes, being a sand volume and a water volume. The proposed model has the capability to generate optimal environmental data to input in other mathematical models in need of environmental data. The following enhancements were implemented: optional abstraction levels of the hydrodynamic behavior, morphological formation of underwater ripples under unilateral currents in any direction as well as morphological formation of underwater ripples under wave current interaction, grain size distribution of the sand in every time step in the entire volume and compaction distribution in every time step in the entire sediment volume. The proposed cellular automata model is a closed toroidal system. The toroidal approach of the model enables to build up infinite rippled surfaces by using the generated sediment volumes as tiles; this solves boundary problems in for example acoustic models. Using the fractal properties of the sand ripples, infinite surfaces containing rippled dunes can be generated

Geological and morphological setting of 2778 methane seeps in the Dnepr paleo-delta, northwestern Black Sea

The Dnepr paleo-delta area in the NW Black Sea is characterized by an abundant presence of methane seeps. During the expeditions of May–June 2003 and 2004 within the EU-funded CRIMEA project, detailed multibeam, seismic and hydro-acoustic water-column investigations were carried out to study the relation between the spatial distribution of methane seeps, sea-floor morphology and sub-surface structures.2778 new methane seeps were detected on echosounding records in an area of 1540 km2. All seeps are located in the transition zone between the continental shelf and slope, in water depths of 66 to 825 m. The integration of the different geophysical datasets clearly indicates that methane seeps are not randomly distributed in this area, but are concentrated in specific locations.The depth limit for the majority of the detected seeps is 725 m water depth, which corresponds more or less with the stability limit for pure methane hydrate at the ambient bottom temperature (8.9 °C) in this part of the Black Sea. This suggests that, where gas hydrates are stable, they play the role of buffer for the upward migration of methane gas and thus prevent seepage of methane bubbles into the water column.Higher up on the margin, gas seeps are widespread, but accurate mapping illustrates that seeps occur preferentially in association with particular morphological and sub-surface features. On the shelf, the highest concentration of seeps is found in elongated depressions (pockmarks) above the margins of filled channels. On the continental slope where no pockmarks have been observed, seepage occurs along crests of sedimentary ridges. There, seepage is focussed by a parallel-stratified sediment cover that thins out towards the ridge crests. On the slope, seepage also appears in the vicinity of canyons (bottom, flanks and margins) or near the scarps of submarine landslides where mass-wasting breaches the fine-grained sediment cover that acts as a stratigraphic seal. The seismic data show the presence of a distinct “gas front,” which has been used to map the depth of the free gas within the sea-floor sediments. The depth of this gas front is variable and locally domes up to the sea floor. Where the gas front approaches the seafloor, gas bubbles were detected in the water column. A regional map of the sub-surface depth of the gas front emphasises this “gas front-versus-seep” relationship.The integration of all data sets indicates that the spatial distribution of methane seeps in the Dnepr paleo-delta is mainly controlled by the gas-hydrate stability zone as well as by stratigraphic and sedimentary factors

Geological and morphological setting of 2778 methane seeps in the Dnepr paleo-delta, northwestern Black Sea

The Dnepr paleo-delta area in the NW Black Sea is characterized by an abundant presence of methane seeps. During the expeditions of May–June 2003 and 2004 within the EU-funded CRIMEA project, detailed multibeam, seismic and hydro-acoustic water-column investigations were carried out to study the relation between the spatial distribution of methane seeps, sea-floor morphology and sub-surface structures.2778 new methane seeps were detected on echosounding records in an area of 1540 km2. All seeps are located in the transition zone between the continental shelf and slope, in water depths of 66 to 825 m. The integration of the different geophysical datasets clearly indicates that methane seeps are not randomly distributed in this area, but are concentrated in specific locations.The depth limit for the majority of the detected seeps is 725 m water depth, which corresponds more or less with the stability limit for pure methane hydrate at the ambient bottom temperature (8.9 °C) in this part of the Black Sea. This suggests that, where gas hydrates are stable, they play the role of buffer for the upward migration of methane gas and thus prevent seepage of methane bubbles into the water column.Higher up on the margin, gas seeps are widespread, but accurate mapping illustrates that seeps occur preferentially in association with particular morphological and sub-surface features. On the shelf, the highest concentration of seeps is found in elongated depressions (pockmarks) above the margins of filled channels. On the continental slope where no pockmarks have been observed, seepage occurs along crests of sedimentary ridges. There, seepage is focussed by a parallel-stratified sediment cover that thins out towards the ridge crests. On the slope, seepage also appears in the vicinity of canyons (bottom, flanks and margins) or near the scarps of submarine landslides where mass-wasting breaches the fine-grained sediment cover that acts as a stratigraphic seal. The seismic data show the presence of a distinct “gas front,” which has been used to map the depth of the free gas within the sea-floor sediments. The depth of this gas front is variable and locally domes up to the sea floor. Where the gas front approaches the seafloor, gas bubbles were detected in the water column. A regional map of the sub-surface depth of the gas front emphasises this “gas front-versus-seep” relationship.The integration of all data sets indicates that the spatial distribution of methane seeps in the Dnepr paleo-delta is mainly controlled by the gas-hydrate stability zone as well as by stratigraphic and sedimentary factors

[18F]ZCDD083: a PFKFB3-targeted PET tracer for atherosclerotic plaque imaging

Copyright © 2020 American Chemical Society. Funding We thank the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie ITNEuropean Joint Doctorate MOGLYNET (grant agreement No. 675527).Peer reviewedPostprin

GATE : a simulation toolkit for PET and SPECT

Monte Carlo simulation is an essential tool in emission tomography that can assist in the design of new medical imaging devices, the optimization of acquisition protocols, and the development or assessment of image reconstruction algorithms and correction techniques. GATE, the Geant4 Application for Tomographic Emission, encapsulates the Geant4 libraries to achieve a modular, versatile, scripted simulation toolkit adapted to the field of nuclear medicine. In particular, GATE allows the description of time-dependent phenomena such as source or detector movement, and source decay kinetics. This feature makes it possible to simulate time curves under realistic acquisition conditions and to test dynamic reconstruction algorithms. A public release of GATE licensed under the GNU Lesser General Public License can be downloaded at the address http://www-lphe.epfl.ch/GATE/

Epidemiological study of phylogenetic transmission clusters in a local HIV-1 epidemic reveals distinct differences between subtype B and non-B infections

<p>Abstract</p> <p>Background</p> <p>The number of HIV-1 infected individuals in the Western world continues to rise. More in-depth understanding of regional HIV-1 epidemics is necessary for the optimal design and adequate use of future prevention strategies. The use of a combination of phylogenetic analysis of HIV sequences, with data on patients' demographics, infection route, clinical information and laboratory results, will allow a better characterization of individuals responsible for local transmission.</p> <p>Methods</p> <p>Baseline HIV-1 <it>pol </it>sequences, obtained through routine drug-resistance testing, from 506 patients, newly diagnosed between 2001 and 2009, were used to construct phylogenetic trees and identify transmission-clusters. Patients' demographics, laboratory and clinical data, were retrieved anonymously. Statistical analysis was performed to identify subtype-specific and transmission-cluster-specific characteristics.</p> <p>Results</p> <p>Multivariate analysis showed significant differences between the 59.7% of individuals with subtype B infection and the 40.3% non-B infected individuals, with regard to route of transmission, origin, infection with <it>Chlamydia </it>(p = 0.01) and infection with Hepatitis C virus (p = 0.017). More and larger transmission-clusters were identified among the subtype B infections (p < 0.001). Overall, in multivariate analysis, clustering was significantly associated with Caucasian origin, infection through homosexual contact and younger age (all p < 0.001). Bivariate analysis additionally showed a correlation between clustering and syphilis (p < 0.001), higher CD4 counts (p = 0.002), <it>Chlamydia </it>infection (p = 0.013) and primary HIV (p = 0.017).</p> <p>Conclusions</p> <p>Combination of phylogenetics with demographic information, laboratory and clinical data, revealed that HIV-1 subtype B infected Caucasian men-who-have-sex-with-men with high prevalence of sexually transmitted diseases, account for the majority of local HIV-transmissions. This finding elucidates observed epidemiological trends through molecular analysis, and justifies sustained focus in prevention on this high risk group.</p

Trends in axillary lymph node dissection for early-stage breast cancer in Europe: Impact of evidence on practice

Background: Data from recently published trials have provided practice-changing recommendations for the surgical approach to the axilla in breast cancer. Patients with T1-2 lesions, treated with breast conservation, who have not received neoadjuvant chemotherapy and have 1\u20132 positive sentinel nodes (Z0011-criteria) may avoid axillary lymph node dissection (ALND). We aim to describe the dissemination of this practice in Europe over an extended period of time. Methods: Our source of data was the eusomaDB, a central data warehouse of prospectively collected information of the European Society of Breast Cancer Specialists (EUSOMA). We identified cases fulfilling Z0011-criteria from 2005 to 2016 from 34 European breast centers and report trends in ALND. Data derived from Germany, Italy, Belgium, Switzerland, Austria, and Netherlands. Results: 6671 patients fulfilled Z0011-criteria. Rates of ALND showed a statistically significant decrease from 2010 (89%) to 2011 (73%), reaching 46% in 2016 (p < 0.001). After multivariable analysis, factors associated with higher probability of ALND were earlier year of surgery, younger age, increasing tumor size and grade, and being operated in Italy (p < 0.001). The minimum and maximal rates of ALND in the most recent two-year period (2015\u20132016) were 0% and 83% in two centers located in different countries (p < 0.001). Conclusion: Our study demonstrates, a decrease in rates of ALND that started after year 2010 through the end of the study period. Wide differences were observed among centers and countries indicating the need to spread unified clinical guidelines in Europe to allow for homogeneous evidence-based practice patterns

When workplace unionism in global value chains does not function well : exploring the impediments

Improving working conditions at the bottom of global value chains has become a central issue in our global economy. In this battle, trade unionism has been presented as a way for workers to make their voices heard. Therefore, it is strongly promoted by most social standards. However, establishing a well-functioning trade union is not as obvious as it may seem. Using a comparative case study approach, we examine impediments to farm-level unionism in the cut flower industry in Ethiopia. For this purpose, we propose an integrated framework combining two lenses, namely a vertical one (governance and structure of global value chains) and a horizontal one (socio-economic context). We identify 10 impediments that point to three major dimensions contributing to unionisation. These three dimensions include awareness of and interest from workers, legitimacy of trade unions, and capacity of trade unions to act. Furthermore, our results suggest that private social standards may, in certain cases, be counterproductive for the efficient functioning of trade unions. Although we argue that there is no ‘quick fix’ solution to weak workplace unionism at the bottom of global value chains, we stress the importance of considering the dynamics of, and interactions between, the impediments when designing potential support measures that mitigate negative impacts