Time-reversal symmetric resolution of unity without background integrals in open quantum systems

We present a new complete set of states for a class of open quantum systems, to be used in expansion of the Green's function and the time-evolution operator. A remarkable feature of the complete set is that it observes time-reversal symmetry in the sense that it contains decaying states (resonant states) and growing states (anti-resonant states) parallelly. We can thereby pinpoint the occurrence of the breaking of time-reversal symmetry at the choice of whether we solve Schroedinger equation as an initial-condition problem or a terminal-condition problem. Another feature of the complete set is that in the subspace of the central scattering area of the system, it consists of contributions of all states with point spectra but does not contain any background integrals. In computing the time evolution, we can clearly see contribution of which point spectrum produces which time dependence. In the whole infinite state space, the complete set does contain an integral but it is over unperturbed eigenstates of the environmental area of the system and hence can be calculated analytically. We demonstrate the usefulness of the complete set by computing explicitly the survival probability and the escaping probability as well as the dynamics of wave packets. The origin of each term of matrix elements is clear in our formulation, particularly the exponential decays due to the resonance poles.Comment: 62 pages, 13 figure

Non-trivial stably free modules over crossed products

We consider the class of crossed products of noetherian domains with universal enveloping algebras of Lie algebras. For algebras from this class we give a sufficient condition for the existence of projective non-free modules. This class includes Weyl algebras and universal envelopings of Lie algebras, for which this question, known as noncommutative Serre's problem, was extensively studied before. It turns out that the method of lifting of non-trivial stably free modules from simple Ore extensions can be applied to crossed products after an appropriate choice of filtration. The motivating examples of crossed products are provided by the class of RIT algebras, originating in non-equilibrium physics.Comment: 13 page

Stable States of Biological Organisms

A novel model of biological organisms is advanced, treating an organism as a self-consistent system subject to a pathogen flux. The principal novelty of the model is that it describes not some parts, but a biological organism as a whole. The organism is modeled by a five-dimensional dynamical system. The organism homeostasis is described by the evolution equations for five interacting components: healthy cells, ill cells, innate immune cells, specific immune cells, and pathogens. The stability analysis demonstrates that, in a wide domain of the parameter space, the system exhibits robust structural stability. There always exist four stable stationary solutions characterizing four qualitatively differing states of the organism: alive state, boundary state, critical state, and dead state.Comment: Latex file, 12 pages, 4 figure

Hidden Markov Model Variants and their Application

Markov statistical methods may make it possible to develop an unsupervised learning process that can automatically identify genomic structure in prokaryotes in a comprehensive way. This approach is based on mutual information, probabilistic measures, hidden Markov models, and other purely statistical inputs. This approach also provides a uniquely common ground for comparative prokaryotic genomics. The approach is an on-going effort by its nature, as a multi-pass learning process, where each round is more informed than the last, and thereby allows a shift to the more powerful methods available for supervised learning at each iteration. It is envisaged that this "bootstrap" learning process will also be useful as a knowledge discovery tool. For such an ab initio prokaryotic gene-finder to work, however, it needs a mechanism to identify critical motif structure, such as those around the start of coding or start of transcription (and then, hopefully more). For eukaryotes, even with better start-of-coding identification, parsing of eukaryotic coding regions by the HMM is still limited by the HMM's single gene assumption, as evidenced by the poor performance in alternatively spliced regions. To address these complications an approach is described to expand the states in a eukaryotic gene-predictor HMM, to operate with two layers of DNA parsing. This extension from the single layer gene prediction parse is indicated after preliminary analysis of the C. elegans alt-splice statistics. State profiles have made use of a novel hash-interpolating MM (hIMM) method. A new implementation for an HMM-with-Duration is also described, with far-reaching application to gene-structure identification and analysis of channel current blockade data

Oscillatory behaviour in a lattice prey-predator system

Using Monte Carlo simulations we study a lattice model of a prey-predator system. We show that in the three-dimensional model populations of preys and predators exhibit coherent periodic oscillations but such a behaviour is absent in lower-dimensional models. Finite-size analysis indicate that amplitude of these oscillations is finite even in the thermodynamic limit. In our opinion, this is the first example of a microscopic model with stochastic dynamics which exhibits oscillatory behaviour without any external driving force. We suggest that oscillations in our model are induced by some kind of stochastic resonance.Comment: 7 pages, 10 figures, Phys.Rev.E (Nov. 1999

Self-adjoint Lyapunov variables, temporal ordering and irreversible representations of Schroedinger evolution

In non relativistic quantum mechanics time enters as a parameter in the Schroedinger equation. However, there are various situations where the need arises to view time as a dynamical variable. In this paper we consider the dynamical role of time through the construction of a Lyapunov variable - i.e., a self-adjoint quantum observable whose expectation value varies monotonically as time increases. It is shown, in a constructive way, that a certain class of models admit a Lyapunov variable and that the existence of a Lyapunov variable implies the existence of a transformation mapping the original quantum mechanical problem to an equivalent irreversible representation. In addition, it is proved that in the irreversible representation there exists a natural time ordering observable splitting the Hilbert space at each t>0 into past and future subspaces.Comment: Accepted for publication in JMP. Supercedes arXiv:0710.3604. Discussion expanded to include the case of Hamiltonians with an infinitely degenerate spectru

Kinetics of Clustering in Traffic Flows

We study a simple aggregation model that mimics the clustering of traffic on a one-lane roadway. In this model, each ``car'' moves ballistically at its initial velocity until it overtakes the preceding car or cluster. After this encounter, the incident car assumes the velocity of the cluster which it has just joined. The properties of the initial distribution of velocities in the small velocity limit control the long-time properties of the aggregation process. For an initial velocity distribution with a power-law tail at small velocities, \pvim as $v \to 0$, a simple scaling argument shows that the average cluster size grows as n \sim t^{\va} and that the average velocity decays as v \sim t^{-\vb} as $t\to \infty$. We derive an analytical solution for the survival probability of a single car and an asymptotically exact expression for the joint mass-velocity distribution function. We also consider the properties of spatially heterogeneous traffic and the kinetics of traffic clustering in the presence of an input of cars.Comment: 18 pages, Plain TeX, 2 postscript figure

Modeling and Simulation of Multi-Lane Traffic Flow

A most important aspect in the field of traffic modeling is the simulation of bottleneck situations. For their realistic description a macroscopic multi-lane model for uni-directional freeways including acceleration, deceleration, velocity fluctuations, overtaking and lane-changing maneuvers is systematically deduced from a gas-kinetic (Boltzmann-like) approach. The resulting equations contain corrections with respect to previous models. For efficient computer simulations, a reduced model delineating the coarse-grained temporal behavior is derived and applied to bottleneck situations.Comment: For related work see http://www.theo2.physik.uni-stuttgart.de/helbing.htm

An Alternative Interpretation of Statistical Mechanics

In this paper I propose an interpretation of classical statistical mechanics that centers on taking seriously the idea that probability measures represent complete states of statistical mechanical systems. I show how this leads naturally to the idea that the stochasticity of statistical mechanics is associated directly with the observables of the theory rather than with the microstates (as traditional accounts would have it). The usual assumption that microstates are representationally significant in the theory is therefore dispensable, a consequence which suggests interesting possibilities for developing non-equilibrium statistical mechanics and investigating inter-theoretic answers to the foundational questions of statistical mechanics

A linear nonequilibrium thermodynamics approach to optimization of thermoelectric devices

Improvement of thermoelectric systems in terms of performance and range of applications relies on progress in materials science and optimization of device operation. In this chapter, we focuse on optimization by taking into account the interaction of the system with its environment. For this purpose, we consider the illustrative case of a thermoelectric generator coupled to two temperature baths via heat exchangers characterized by a thermal resistance, and we analyze its working conditions. Our main message is that both electrical and thermal impedance matching conditions must be met for optimal device performance. Our analysis is fundamentally based on linear nonequilibrium thermodynamics using the force-flux formalism. An outlook on mesoscopic systems is also given.Comment: Chapter 14 in "Thermoelectric Nanomaterials", Editors Kunihito Koumoto and Takao Mori, Springer Series in Materials Science Volume 182 (2013