Differentiation of ruminant transmissible spongiform encephalopathy isolate types, including bovine spongiform encephalopathy and CH1641 scrapie

With increased awareness of the diversity of transmissible spongiform encephalopathy (TSE) strains in the ruminant population, comes an appreciation of the need for improved methods of differential diagnosis. Exposure to bovine spongiform encephalopathy (BSE) has been associated with the human TSE, variant Creutzfeldt–Jakob disease, emphasizing the necessity in distinguishing low-risk TSE types from BSE. TSE type discrimination in ruminants such as cattle, sheep, goats and deer, requires the application of several prion protein (PrP)-specific antibodies in parallel immunochemical tests on brain homogenates or tissue sections from infected animals. This study uses in a single incubation step, three PrP-specific antibodies and fluorescent Alexa dye-labelled anti-mouse Fabs on a Western blot. The usual amount of brain tissue needed is 0.5 mg. This multiplex application of antibodies directed towards three different PrP epitopes enabled differential diagnosis of all established main features of classical scrapie, BSE and Nor98-like scrapie in sheep and goats, as well as the currently known BSE types C, H and L in cattle. Moreover, due to an antibody-dependent dual PrP-banding pattern, for the first time CH1641 scrapie of sheep can be reliably discriminated from the other TSE isolate types in sheep

Strong stability of 2D viscoelastic Poiseuille-type flows

We investigate Lp stability issues of small viscoelastic Poiseuilletype ows in two dimensions stemming from a model considered in Fang- Hua Lin, Chun Liu, and Ping Zhang (2005). We show local existence of perturbed ows of locally-in-time existing Poiseuille-type ows and global existence of the peturbed ows whenever the initial perturbation is small enough. In this case the perturbed ow decays exponentially. In all cases, the perturbations immediately regularize

Fluctuations and stability in front propagation

Propagating fronts arising from bistable reaction-diffusion equations are a purely deterministic effect. Stochastic reaction-diffusion processes also show front propagation which coincides with the deterministic effect in the limit of small fluctuations (usually, large populations). However, for larger fluctuations propagation can be affected. We give an example, based on the classic spruce-budworm model, where the direction of wave propagation, i.e., the relative stability of two phases, can be reversed by fluctuations.Comment: 5 pages, 5 figure

Elucidating Surface Structure with Action Spectroscopy

Surface Action Spectroscopy, a vibrational spectroscopy method developed in recent years at the Fritz Haber Institute is employed for structure determination of clean and H2O-dosed (111) magnetite surfaces. Surface structural information is revealed by using the microscopic surface vibrations as a fingerprint of the surface structure. Such vibrations involve just the topmost atomic layers, and therefore the structural information is truly surface related. Our results strongly support the view that regular Fe3O4(111)/Pt(111) is terminated by the so-called Fetet1 termination, that the biphase termination of Fe3O4(111)/Pt(111) consists of FeO and Fe3O4(111) terminated areas, and we show that the method can differentiate between different water structures in H2O-derived adsorbate layers on Fe3O4(111)/Pt(111). With this, we conclude that the method is a capable new member in the set of techniques providing crucial information to elucidate surface structures. The method does not rely on translational symmetry and can therefore also be applied to systems which are not well ordered. Even an application to rough surfaces is possible

Methylation landscape in the genome of higher plants of agronomical interest

In eukaryotic cells the methylation of cytosines in DNA is an essential mechanism which is implied in the dynamic organization of the genome structure, in relation to genes expression. Plant genomes contain a significant proportion and variable according to the species, of sequences which are likely to be methylated during the life of the plant. It is known that the establishment and the maintenance of methylation profiles in both genomic areas and specific sequences constitute a crucial mediator in the modulation of genes expression during development. Recent studies have evidenced the implication of epimutations in the adaptation of plants to their environment particularly in response to biotic and abiotic stresses. Recently, the complete mapping of methylation in the genomes of Arabidopsis thaliana and rice provided invaluable information on the distribution of methylation within genes in relation to their expression. The impact of changes in the methylation profiles on the characters of agronomic importance has not been intensively studied yet, whereas this question takes a considerable importance in the context of an increasing food demand and foreseen global climate changes. The METHYLANDSCAPE project proposes to isolate genomic DNA sequences on the basis of their degree of methylation and to connect the variation of their methylation profiles with, on the one hand, the expression of the corresponding genes and, on the other hand, with environmental or developmental processes. Thus, it should be possible to identify genes which expression is differentially controlled by methylation during development and/or in situation of stress, and likely to have an influence on the agronomic value of the plant. The METHYLANDSCAPE partners thus propose to bring signification advances in plant genomics on four original species, by integrating DNA methylation mapping and the relationship between epigenome and transcriptome, up to the generation of methylation-sensitive markers linked with characters of agronomic importance. (Texte intégral

Peculiar from-Edge-to-Interior Spin Freezing in a Magnetic Dipolar Cube

By molecular dynamics simulation, we have investigated classical Heisenberg spins, which are arrayed on a finite simple cubic lattice and interact with each other only by the dipole-dipole interaction, and have found its peculiar it from-Edge-to-interior freezing process. As the temperature is decreased, spins on each edge predominantly start to freeze in a ferromagnetic alignment parallel to the edge around the corresponding bulk transition temperature, then from each edges grow domains with short-range orders similar to the corresponding bulk orders, and the system ends up with a unique multi-domain ground state at the lowest temperature. We interpret this freezing characteristics is attributed to the anisotropic and long-range nature of the dipole-dipole interaction combined with a finite-size effect.Comment: 11 pages 5 figure

The ideal gas as an urn model: derivation of the entropy formula

The approach of an ideal gas to equilibrium is simulated through a generalization of the Ehrenfest ball-and-box model. In the present model, the interior of each box is discretized, {\it i.e.}, balls/particles live in cells whose occupation can be either multiple or single. Moreover, particles occasionally undergo random, but elastic, collisions between each other and against the container walls. I show, both analitically and numerically, that the number and energy of particles in a given box eventually evolve to an equilibrium distribution $W$ which, depending on cell occupations, is binomial or hypergeometric in the particle number and beta-like in the energy. Furthermore, the long-run probability density of particle velocities is Maxwellian, whereas the Boltzmann entropy $\ln W$ exactly reproduces the ideal-gas entropy. Besides its own interest, this exercise is also relevant for pedagogical purposes since it provides, although in a simple case, an explicit probabilistic foundation for the ergodic hypothesis and for the maximum-entropy principle of thermodynamics. For this reason, its discussion can profitably be included in a graduate course on statistical mechanics.Comment: 17 pages, 3 figure

Gas-Phase Mechanism of O^.-/Ni²⁺-Mediated Methane Conversion to Formaldehyde

The gas-phase reaction of NiAl2O4+ with CH4 is studied by mass spectrometry in combination with vibrational action spectroscopy and density functional theory (DFT). Two product ions, NiAl2O4H+ and NiAl2O3H2+, are identified in the mass spectra. The DFT calculations predict that the global minimum-energy isomer of NiAl2O4+ contains Ni in the +II oxidation state and features a terminal Al−O.- oxygen radical site. They show that methane can react along two competing pathways leading to formation of either a methyl radical (CH3⋅) or formaldehyde (CH2O). Both reactions are initiated by hydrogen atom transfer from methane to the terminal O.- site, followed by either CH3⋅ loss or CH3⋅ migration to an O2- site next to the Ni2+ center. The CH3⋅ attaches as CH3+ to O2- and its unpaired electron is transferred to the Ni-center reducing it to Ni+. The proposed mechanism is experimentally confirmed by vibrational spectroscopy of the reactant and two different product ions

Gas-Phase Mechanism of O^.-/Ni²⁺-Mediated Methane Conversion to Formaldehyde

The gas-phase reaction of NiAl2O4+ with CH4 is studied by mass spectrometry in combination with vibrational action spectroscopy and density functional theory (DFT). Two product ions, NiAl2O4H+ and NiAl2O3H2+, are identified in the mass spectra. The DFT calculations predict that the global minimum-energy isomer of NiAl2O4+ contains Ni in the +II oxidation state and features a terminal Al−O.- oxygen radical site. They show that methane can react along two competing pathways leading to formation of either a methyl radical (CH3⋅) or formaldehyde (CH2O). Both reactions are initiated by hydrogen atom transfer from methane to the terminal O.- site, followed by either CH3⋅ loss or CH3⋅ migration to an O2- site next to the Ni2+ center. The CH3⋅ attaches as CH3+ to O2- and its unpaired electron is transferred to the Ni-center reducing it to Ni+. The proposed mechanism is experimentally confirmed by vibrational spectroscopy of the reactant and two different product ions