Proteomic analysis of the rat ovary following chronic low-dose exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)

2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) is a ubiquitously distributed endocrine-disrupting chemical and reproductive toxicant. In order to elucidate low-dose TCDD-mediated effects on reproductive or endocrine functions, female Sprague-Dawley rats were orally administered various concentrations (20, 50, or 125 ng/kg once weekly) TCDD for 29 wk. A proteomic analysis of the ovaries by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization (MALDI) tandem mass spectrometry showed distinct changes in the levels of several proteins that are relevant markers of TCDD toxicity. Serum estradiol (E2) levels of TCDD-treated animals were markedly lower than control. There were no significant differences in bone mineral density (BMD) of femurs. The body weight of the 125-ng/kg TCDD group was significantly decreased relative to control and there was also a significant reduction in absolute and relative ovarian weights. Expressions of selenium binding protein 2, glutathione S-transferase mu type 3, Lrpap1 protein, NADPH, and peptidylprolyl isomerase D were upregulated, while prohibitin and N-ethylmaleimide-sensitive factor expression levels were downregulated. Data provide further insight into the mechanisms by which TCDD disrupts ovarian function by indicating which differential protein expressions following low-dose TCDD exposure

Energy, interaction, and photoluminescence of spin-reversed quasielectrons in fractional quantum Hall systems

The energy and photoluminescence spectra of a two-dimensional electron gas in the fractional quantum Hall regime are studied. The single-particle properties of reversed-spin quasielectrons (QE$_{\rm R}$'s) as well as the pseudopotentials of their interaction with one another and with Laughlin quasielectrons (QE's) and quasiholes (QH's) are calculated. Based on the short-range character of the QE$_{\rm R}$--QE$_{\rm R}$ and QE$_{\rm R}$--QE repulsion, the partially unpolarized incompressible states at the filling factors $\nu={4\over11}$ and ${5\over13}$ are postulated within Haldane's hierarchy scheme. To describe photoluminescence, the family of bound $h($QE$_{\rm R})_n$ states of a valence hole $h$ and $n$ QE$_{\rm R}$'s are predicted in analogy to the found earlier fractionally charged excitons $h$QE$_n$. The binding energy and optical selection rules for both families are compared. The $h$QE$_{\rm R}$ is found radiative in contrast to the dark $h$QE, and the $h($QE$_{\rm R})_2$ is found non-radiative in contrast to the bright $h$QE$_2$.Comment: 9 pages, 6 figure

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.

MOTIVATION: Reconstruction of gene regulatory networks (GRNs) is of utmost interest to biologists and is vital for understanding the complex regulatory mechanisms within the cell. Despite various methods developed for reconstruction of GRNs from gene expression profiles, they are notorious for high false positive rate owing to the noise inherited in the data, especially for the dataset with a large number of genes but a small number of samples. RESULTS: In this work, we present a novel method, namely NARROMI, to improve the accuracy of GRN inference by combining ordinary differential equation-based recursive optimization (RO) and information theory-based mutual information (MI). In the proposed algorithm, the noisy regulations with low pairwise correlations are first removed by using MI, and the redundant regulations from indirect regulators are further excluded by RO to improve the accuracy of inferred GRNs. In particular, the RO step can help to determine regulatory directions without prior knowledge of regulators. The results on benchmark datasets from Dialogue for Reverse Engineering Assessments and Methods challenge and experimentally determined GRN of Escherichia coli show that NARROMI significantly outperforms other popular methods in terms of false positive rates and accuracy. AVAILABILITY: All the source data and code are available at: http://csb.shu.edu.cn/narromi.htm

Negatively Charged Excitons and Photoluminescence in Asymmetric Quantum Well

We study photoluminescence (PL) of charged excitons ($X^-$) in narrow asymmetric quantum wells in high magnetic fields B. The binding of all $X^-$ states strongly depends on the separation $\delta$ of electron and hole layers. The most sensitive is the ``bright'' singlet, whose binding energy decreases quickly with increasing $\delta$ even at relatively small B. As a result, the value of B at which the singlet--triplet crossing occurs in the $X^-$ spectrum also depends on $\delta$ and decreases from 35 T in a symmetric 10 nm GaAs well to 16 T for $\delta=0.5$ nm. Since the critical values of $\delta$ at which different $X^-$ states unbind are surprisingly small compared to the well width, the observation of strongly bound $X^-$ states in an experimental PL spectrum implies virtually no layer displacement in the sample. This casts doubt on the interpretation of PL spectra of heterojunctions in terms of $X^-$ recombination

EGAM Induced by Energetic-electrons and Nonlinear Interactions among EGAM, BAEs and Tearing Modes in a Toroidal Plasma

In this letter, it is reported that the first experimental results are associated with the GAM induced by energetic electrons (eEGAM) in HL-2A Ohmic plasma. The energetic-electrons are generated by parallel electric fields during magnetic reconnection associated with tearing mode (TM). The eEGAM localizes in the core plasma, i.e. in the vicinity of q=2 surface, and is very different from one excited by the drift-wave turbulence in the edge plasma. The analysis indicated that the eEGAM is provided with the magnetic components, whose intensities depend on the poloidal angles, and its mode numbers are jm/nj=2/0. Further, there exist intense nonlinear interactions among eEGAM, BAEs and strong tearing modes (TMs). These new findings shed light on the underlying physics mechanism for the excitation of the low frequency (LF) Alfv\'enic and acoustic uctuations.Comment: 5 pages,4 figure

Chiral Baryon Fields in the QCD Sum Rule

We study the structure of local baryon fields using the method of QCD sum rule. We only consider the single baryon fields and calculate their operator product expansions. We find that the octet baryon fields belonging to the chiral representations [(3,3*)+(3*,3)] and [(8,1)+(1,8)] and the decuplet baryon fields belonging to the chiral representations [(3,6)+(6,3)] lead to the baryon masses which are consistent with the experimental data of ground baryon masses. We also calculate their decay constants, check our normalizations for baryon fields in PRD81:054002(2010) and find that they are well-defined.Comment: 12 pages, 6 figure, 1 table, accepted by EPJ

Stripes in Quantum Hall Double Layer Systems

We present results of a study of double layer quantum Hall systems in which each layer has a high-index Landau level that is half-filled. Hartree-Fock calculations indicate that, above a critical layer separation, the system becomes unstable to the formation of a unidirectional coherent charge density wave (UCCDW), which is related to stripe states in single layer systems. The UCCDW state supports a quantized Hall effect when there is tunneling between layers, and is {\it always} stable against formation of an isotropic Wigner crystal for Landau indices $N \ge 1$. The state does become unstable to the formation of modulations within the stripes at large enough layer separation. The UCCDW state supports low-energy modes associated with interlayer coherence. The coherence allows the formation of charged soliton excitations, which become gapless in the limit of vanishing tunneling. We argue that this may result in a novel {\it ``critical Hall state''}, characterized by a power law $I-V$ in tunneling experiments.Comment: 10 pages, 8 figures include

Exclusion Statistics of Quasiparticles in Condensed States of Composite Fermion Excitations

The exclusion statistics of quasiparticles is found at any level of the hierarchy of condensed states of composite fermion excitations (for which experimental indications have recently been found). The hierarchy of condensed states of excitations in boson Jain states is introduced and the statistics of quasiparticles is found. The quantum Hall states of charged $\alpha$-anyons ($\alpha$ -- the exclusion statistics parameter) can be described as incompressible states of $(\alpha+2p)$-anyons ($2p$ -- an even number).Comment: 4 page

Thermal Processes in the Oscillations of Gas Bubbles in Tubes

The forced oscillations of a system consisting of two finite liquid columns in a duct separated by a gas bubble are studied in the linear approximation. It is found that thermal processes in the gas induce a very significant damping in the system, which can exceed viscous damping even in capillaries with a submillimeter diameter. The study is motivated by the possibility of using gas bubbles as actuators in microdevices