Congruence of chloroplast- and nuclear-encoded DNA sequence variations used to assess species boundaries in the soil microalga Heterococcus (Stramenopiles, Xanthophyceae).

BackgroundHeterococcus is a microalgal genus of Xanthophyceae (Stramenopiles) that is common and widespread in soils, especially from cold regions. Species are characterized by extensively branched filaments produced when grown on agarized culture medium. Despite the large number of species described exclusively using light microscopic morphology, the assessment of species diversity is hampered by extensive morphological plasticity.ResultsTwo independent types of molecular data, the chloroplast-encoded psbA/rbcL spacer complemented by rbcL gene and the internal transcribed spacer 2 of the nuclear rDNA cistron (ITS2), congruently recovered a robust phylogenetic structure. With ITS2 considerable sequence and secondary structure divergence existed among the eight species, but a combined sequence and secondary structure phylogenetic analysis confined to helix II of ITS2 corroborated relationships as inferred from the rbcL gene phylogeny. Intra-genomic divergence of ITS2 sequences was revealed in many strains. The 'monophyletic species concept', appropriate for microalgae without known sexual reproduction, revealed eight different species. Species boundaries established using the molecular-based monophyletic species concept were more conservative than the traditional morphological species concept. Within a species, almost identical chloroplast marker sequences (genotypes) were repeatedly recovered from strains of different origins. At least two species had widespread geographical distributions; however, within a given species, genotypes recovered from Antarctic strains were distinct from those in temperate habitats. Furthermore, the sequence diversity may correspond to adaptation to different types of habitats or climates.ConclusionsWe established a method and a reference data base for the unambiguous identification of species of the common soil microalgal genus Heterococcus which uses DNA sequence variation in markers from plastid and nuclear genomes. The molecular data were more reliable and more conservative than morphological data

Nanoscale assembly processes revealed in the nacroprismatic transition zone of Pinna nobilis mollusc shells

Intricate biomineralization processes in molluscs engineer hierarchical structures with meso-, nano-, and atomic architectures that give the final composite material exceptional mechanical strength and optical iridescence on the macroscale. This multiscale biological assembly inspires new synthetic routes to complex materials. Our investigation of the prism-nacre interface reveals nanoscale details governing the onset of nacre formation using high-resolution scanning transmission electron microscopy. A wedge polishing technique provides unprecedented, large-area specimens required to span the entire interface. Within this region, we find a transition from nanofibrillar aggregation to irregular early-nacre layers, to well-ordered mature nacre suggesting the assembly process is driven by aggregation of nanoparticles (~50-80 nm) within an organic matrix that arrange in fiber-like polycrystalline configurations. The particle number increases successively and, when critical packing is reached, they merge into early-nacre platelets. These results give new insights into nacre formation and particle-accretion mechanisms that may be common to many calcareous biominerals.Comment: 5 Figure

Multiband Superconductivity in KFe2As2: Evidence for one Isotropic and several Liliputian Energy Gaps

We report a detailed low-temperature thermodynamic investigation (heat capacity and magnetization) of the superconducting state of KFe2As2 for H || c axis. Our measurements reveal that the properties of KFe2As2 are dominated by a relatively large nodeless energy gap (Delta?0 = 1.9 kBTc) which excludes dx2-y2 symmetry. We prove the existence of several additional extremely small gaps (?Delta0 < 1.0 kBTc) that have a profound impact on the low-temperature and low-field behavior, similar to MgB2, CeCoIn5 and PrOs4Sb12. The zero-field heat capacity is analyzed in a realistic self-consistent 4-band BCS model which qualitatively reproduces the recent laser ARPES results of Okazaki et al. (Science 337 (2012) 1314). Our results show that extremely low-temperature measurements, i.e. T < 0.1 K, will be required in order to resolve the question of the existence of line nodes in this compound.Comment: 7 pages, 6 figure

Do Genetic Differences Explain the Ability of an Alkaline Shrub to Grow in Both Uplands and Wetlands?

The hydrophyte Allenrolfea occidentalis (S. Watson) Kuntze (iodinebush) is a halophytic shrub of the arid southwest that is listed as a facultative wetland species on the National Wetland Plant List. This rating means that the species is usually a hydrophyte but occasionally is found in uplands. We tested for genetic (ecotypic) differences between plants sampled from wetlands versus uplands. We used the technique of genotyping by sequencing to generate data from 132 plants from 30 locations representing both wetland and upland occurrences for over 1300 loci. Analyses indicated that the strongest genetic signal is from differences in geographic distribution: samples that are in close geographic proximity tend to be more similar genetically regardless of whether they occur in wetland or upland locations. We detected no effect of habitat on overall genetic structure, and we found only 2 (of the 1381) loci with a positive association between genotype and habitat; in both cases the association was very weak. We infer that A. occidentalis occurrences near or in wetlands are not influenced by significant differences in genetics, and we find no evidence for wetland and upland ecotypes of this species

Expression in Escherichia coli of a cloned DNA sequence encoding the pre-S2 region of hepatitis B virus

A DNA sequence encoding the entire pre-S2 region (amino acids 120-174; serotype ayw) of human hepatitis B virus envelope protein has been inserted into the lacZ gene of the plasmid pSKS105 yielding a recombinant, pWS3. Lac+ colonies of the Escherichia coli M182 (lacIOPZYA), isolated after transformation with pWS3, produced a pre-S2 peptide-ß-galactosidase fusion protein. This fusion protein, which comprised as much as 3% of the total bacterial protein, was purified to >90% homogeneity by affinity chromatography on p-aminophenyl-ß-D-thiogalactoside-Sepharose. It is immunoprecipitable with rabbit antibodies to a synthetic peptide corresponding to amino acids 120-145 of the pre-S2 region of serotype adw [pre-S(120-145)] or with antibodies to hepatitis B virus. pre-S(120-145) completely blocked the binding of either antibody to the pre-S2 peptide-ß-galactosidase fusion protein. These results indicate that there are antigenic determinants on the fusion protein that are closely related to, if not identical to, determinants on synthetic pre-S(120-145) and on pre-S2 sequences of native hepatitis B virus particles. Thus, bacteria transformed with pWS3 can provide an abundant source of pre-S2-ß-galactosidase fusion protein, which may prove useful either as a diagnostic reagent possessing marker enzyme activity suitable for ELISA tests or as an immunogen with potential to contribute to active prophylaxis of hepatitis B

How Many Tree Species of Birch Are in Alaska? Implications for Wetland Designations

Wetland areas are critical habitats, especially in northern regions of North America. Wetland classifications are based on several factors, including the presence of certain plant species and assemblages of species, of which trees play a significant role. Here we examined wetland species of birch (Betula) in North America, with a focus on Alaska, and the use of birche tree species in wetland delineation. We sampled over 200 trees from sites, including Alaska, Alberta, Minnesota, and New Hampshire. We used genetic data from over 3000 loci detected by restriction site associated DNA analysis. We used an indirect estimate of ploidy based on allelic ratios and we also examined population genetic structure. We find that inferred ploidy is strongly associated with genetic groupings. We find two main distinct groups; one found throughout most of Alaska, extending into Alberta. This group is probably attributable to Betula kenaica, Betula neoalaskana, or both. This group has a diploid genetic pattern although this could easily be a function of allopolyploidy. The second major genetic group appears to extend from Eastern North America into parts of southeastern Alaska. This group represents Betula papyrifera, and is not diploid based on allelic ratios. Published chromosome counts indicate pentaploidy. Because B. papyrifera is the only one of the above species that is distinctly associated with wetland habitats, our findings indicate that tree species of birch found in most parts of Alaska are not reliable indicators of wetland habitats. These results help to support stronger wetland ratings assigned to the tree species of birch for delineation purposes

Multi objective collaborative optimization of systems of systems

Thesis (Nav. E.)--Massachusetts Institute of Technology, Dept. of Ocean Engineering; and, (S.M.)--Massachusetts Institute of Technology, Engineering Systems Division, 2005.Includes bibliographical references (p. 85-88).Concept studies for warship designs typically focus on ship performance characteristics by setting design goals for such things as speed, range, and cost. However, warships generally operate as part of a larger battle or strike group. Therefore, the designs should be evaluated as part of a system of multiple ship systems since designing each ship individually may result in underutilized and excess equipment and capability; in other words an inefficient design of the system of systems. This thesis examines the simultaneous design of several ships using the sea base concept as an example application of a network of ships working together. The number and characteristics of these ships determine the mission performance of the sea base. To properly design any of the sea base ships, the interrelationships must be included. A mission simulation is used to combine the performance characteristics of different ship designs into a single performance objective: the time to deliver a brigade size combat force to its assigned objectives.(cont.) To enable the design of multiple ships, collaborative optimization, a multilevel optimization approach, was used to decompose the problem into individual ship design optimizations with system level interfaces controlled by a system of systems optimization algorithm. This allowed each ship to use techniques and algorithms best suited to reach an optimal design without impacting the design approaches used by the other ships. The classical collaborative optimization approach was relaxed to include multiple objectives such as performance and cost, thus developing a range of solutions which represent the tradeoff between these objectives.by Robert A. Wolf.S.M.Nav.E

Inhibitor of Apoptosis Proteins as Novel Targets in Inflammatory Processes

Objective: Inhibitor of apoptosis proteins (IAPs), such as X-linked or cellular IAP 1/2 (XIAP, cIAP1/2), are important regulators of apoptosis. IAP antagonists are currently under clinical investigation as anticancer agents. Interestingly, IAPs participate in the inflammation-associated TNF receptor signaling complex and regulate NFκB signaling. This raises the question about the role of IAPs in inflammation. Here, we investigated the anti-inflammatory potential of IAP inhibitors and the role of IAPs in inflammatory processes of endothelial cells. Methods and Results: In mice, the small molecule IAP antagonist A-4.10099.1 (ABT) suppressed antigen-induced arthritis, leukocyte infiltration in concanavalin A-evoked liver injury, and leukocyte transmigration in the TNFα-activated cremaster muscle. In vitro, we observed an attenuation of leukocyte– endothelial cell interaction by downregulation of the intercellular adhesion molecule-1. ABT did not impair NFκB signaling but decreased the TNFα-induced activation of the TGF-β–activated kinase 1, p38, and c-Jun N-terminal kinase. These effects are based on the proteasomal degradation of cIAP1/2 accompanied by an altered ratio of the levels of membrane-localized TNF receptor-associated factors 2 and 5. Conclusion: Our results reveal IAP antagonism as a profound anti-inflammatory principle in vivo and highlight IAPs as important regulators of inflammatory processes in endothelial cells

Absence of singular superconducting fluctuation corrections to thermal conductivity

We evaluate the superconducting fluctuation corrections to thermal conductivity in the normal state which diverge as T approaches T_c. We find zero total contribution for one, two and three-dimensional superconductors for arbitrary impurity concentration. The method used is diagrammatic many-body theory, and all contributions -- Aslamazov-Larkin (AL), Maki-Thompson (MT), and density-of-states (DOS) -- are considered. The AL contribution is convergent, whilst the divergences of the DOS and MT diagrams exactly cancel.Comment: 4 pages text; 2 figure

Enhancing IS Education with Flexible Teaching and Learning

Flexible teaching and learning is not a new concept, but it is one that we, as educators, do not focus on enough. Designing and delivering innovative, exciting and relevant learning experiences is needed if we are to make our classes good learning experiences. Information systems (IS) educators deal with technology every day, yet we are sometimes the first ones to forget how to use it in the classroom. Educators must recognize the importance of increasing student control over and active participation in their own learning. This Special Issue of the Journal of Information Systems Education looks at flexible teaching and learning in the IS classroom. We present eight papers on flexible teaching and learning, dealing with both the face-to-face and online classroom environments. We hope that the ideas presented in these papers will foster your thinking in using flexible teaching techniques. In the end, flexible teaching and learning focuses on improving student learning, a goal that we all aspire to in our classrooms