Sodium demand of microorganisms in the phyllosphere and the organic layer of a tropical montane forest in south Ecuador

Recent studies raise the hypothesis that Na shortage restricts decomposition and affects the carbon cycle in tropical forests. When Na concentrations in soils are low and the stands are far off-coast, they do not receive substantial Na inputs from the atmosphere. Since terrestrial plants have low concentrations of Na, which is not considered as an essential element, the demand of soil fauna may not be covered. Yet, in contrast to animals, little is known of Na demands of fungi and phyllosphere microorganisms. We present results from a study on Na limitation in a montane forest ecosystem in South Ecuador, which is located on the eastern cordillera of the Andes. We tested the hypotheses that (1) the study area is characterized by low Na concentrations because of low deposition rates with incident precipitation (wind directions mainly from the Amazonian Basin), (2) decomposition processes are limited by fauna and fungal Na restrictions and (3) Na is retained in the canopy because of Na limitation of microorganisms in phyllosphere. Since 1998, we measure Na fluxes in rainfall, throughfall, stemflow, litter leachate, litterfall and organic layer in a microcatchment under an undisturbed lower montane rainforest. Results reveal comparatively low Na concentrations in the ecosystem and similar Na concentrations in throughfall and stemflow. Since Na fluxes are lower with throughfall than with incident rainfall, we conclude that Na is retained in the canopy. To explore the role of the phyllosphere in Na retention we sampled leaves covered by phyllosphere microorganisms and leaves without phyllosphere cover from several tree species, which were sprayed with a NaCl solution containing 0.5 mg L-1 Na, corresponding to the Na concentration in incident rainfall in our study area. Additionally, responses of litter decomposition to Na additions and the involved interaction of soil fungi and fauna were tested in a litterbag experiment at two sites (1000 and 2000 m a.s.l.). Results revealed enhanced decomposition rates following Na additions, though only in the presence of soil fauna. These results might have future ecosystem implications, since our time series showed that total Na deposition decreased within the past 15 years from ca. 40 kg ha-1 a-1 to 10 kg ha-1 a-1, suggesting a potential role of Na in regulating ecosystem processes

Base metal budgets of a small catchment in a tropical montane forest in South Ecuador

In a tropical montane rain forest in south Ecuador, the alkali and earth alkali metals Ca, Mg, K, and Na are supplied by weathering of the parent substrate consisting of phyllites and metasandstones and by atmospheric inputs. Phases of acid deposition are interrupted by alkalinization through episodic basic dust deposition. Although the biological productivity of most terrestrial ecosystems is thought to be N- and/or P-limited, there is increasing evidence that the essential plant nutrients K, Na, Mg and Ca can also limit biological functioning. We quantified biological and geochemical contributions to base metal fluxes and set up a metal budget of a ca. 9.1-ha large catchment from 1998 to 2013. The catchment is characterized by a high annual interception loss (28–50 %) and a low contribution of stem flow to throughfall. Mean total annual soil input (throughfall + stemflow + litterfall) was 13800 ± 1500 mg m-2 (Ca, mean ± SD), 19000 ± 1510 (K), 4690 ± 619 (Mg) and 846 ± 592 (Na) of which 22 ± 6 % (Ca), 45 ± 16 (K), 39 ± 10 (Mg) and 84 ± 33 (Na) were leached to soil horizons below the organic layer. The three nutrient metals Ca, K and Mg were thus to a large part retained in the biotic part of the catchment. The canopy budget of K was consistently and most pronouncedly negative. The canopy budgets of Ca and Mg were closely correlated and in most years negative, while the budget of Na was consistently positive, indicating net retention of this element in the canopy. The mineral soil retained 79–94 % of Ca, K and Mg, while Na was net released from the mineral soil. The size of mainly biologically controlled aboveground fluxes of Ca, K and Mg was 1-2 orders of magnitude larger than that of mainly geochemically controlled fluxes which are driven by sorption to soil and weathering. Annual net hydrological fluxes (bulk deposition – stream flow) were –66 ± 278 mg m-2 (Ca), 361 ± 421 (K), –188 ± 159 (Mg) and –1700 ± 587 (Na). If estimated dry deposition was included, the system accumulated 86 kg Ca ha-1 and 199 kg K ha-1, had a nearly balanced budget of Mg (+0.3 kg ha-1) and lost 56 kg of Na ha-1 in the last 15 years. The strongest driver of all budgets was the input flux into the various compartments

Organizing research data

Research relies on ever larger amounts of data from experiments, automated production equipment, questionnaries, times series such as weather records, and so on. A major task in science is to combine, process and analyse such data to obtain evidence of patterns and correlations

Tropical Andean Forests Are Highly Susceptible to Nutrient Inputs - Rapid Effects of Experimental N and P Addition to an Ecuadorian Montane Forest

Tropical regions are facing increasing atmospheric inputs of nutrients, which will have unknown consequences for the structure and functioning of these systems. Here, we show that Neotropical montane rainforests respond rapidly to moderate additions of N (50 kg ha−1 yr−1) and P (10 kg ha−1 yr−1). Monitoring of nutrient fluxes demonstrated that the majority of added nutrients remained in the system, in either soil or vegetation. N and P additions led to not only an increase in foliar N and P concentrations, but also altered soil microbial biomass, standing fine root biomass, stem growth, and litterfall. The different effects suggest that trees are primarily limited by P, whereas some processes—notably aboveground productivity—are limited by both N and P. Highly variable and partly contrasting responses of different tree species suggest marked changes in species composition and diversity of these forests by nutrient inputs in the long term. The unexpectedly fast response of the ecosystem to moderate nutrient additions suggests high vulnerability of tropical montane forests to the expected increase in nutrient inputs

Cascade testing in Familial Hypercholesterolaemia: how should family members be contacted?

Cascade testing or screening provides an important mechanism for identifying people at risk of a genetic condition. For some autosomal dominant conditions, such as Familial Hpercholesterolaemia (FH), identifying relatives allows for significant health-affecting interventions to be administered, which can extend a person’s life expectancy significantly. However, cascade screening is not without ethical implications. In this paper, we examine one ethically contentious aspect of cascade screening programmes, namely the alternative methods by which relatives of a proband can be contacted. Should the proband be responsible for contacting his or her family members, or should the screening programme contact family members directly? We argue that direct contact is an ethically justifiable method of contact tracing in cascade screening for FH. Not only has this method of contact already been utilised without adverse effects, an examination of the ethical arguments against it shows these are unsubstantiated. We describe several criteria which, if met, will allow an appropriate balance to be struck between maximising the efficiency of family tracing and respecting the interests of probands and their relatives. Keywords Cascade genetic screening; cascade testing; confidentiality; autonomy; genetics; ethics; guidelines; familial hypercholesterolaemi

Seminal plasma as a source of prostate cancer peptide biomarker candidates for detection of indolent and advanced disease

Background:Extensive prostate specific antigen screening for prostate cancer generates a high number of unnecessary biopsies and over-treatment due to insufficient differentiation between indolent and aggressive tumours. We hypothesized that seminal plasma is a robust source of novel prostate cancer (PCa) biomarkers with the potential to improve primary diagnosis of and to distinguish advanced from indolent disease. <br>Methodology/Principal Findings: In an open-label case/control study 125 patients (70 PCa, 21 benign prostate hyperplasia, 25 chronic prostatitis, 9 healthy controls) were enrolled in 3 centres. Biomarker panels a) for PCa diagnosis (comparison of PCa patients versus benign controls) and b) for advanced disease (comparison of patients with post surgery Gleason score <7 versus Gleason score >>7) were sought. Independent cohorts were used for proteomic biomarker discovery and testing the performance of the identified biomarker profiles. Seminal plasma was profiled using capillary electrophoresis mass spectrometry. Pre-analytical stability and analytical precision of the proteome analysis were determined. Support vector machine learning was used for classification. Stepwise application of two biomarker signatures with 21 and 5 biomarkers provided 83% sensitivity and 67% specificity for PCa detection in a test set of samples. A panel of 11 biomarkers for advanced disease discriminated between patients with Gleason score 7 and organ-confined (<pT3a) or advanced (≥pT3a) disease with 80% sensitivity and 82% specificity in a preliminary validation setting. Seminal profiles showed excellent pre-analytical stability. Eight biomarkers were identified as fragments of N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase​,prostatic acid phosphatase, stabilin-2, GTPase IMAP family member 6, semenogelin-1 and -2. Restricted sample size was the major limitation of the study.</br> <br>Conclusions/Significance: Seminal plasma represents a robust source of potential peptide makers for primary PCa diagnosis. Our findings warrant further prospective validation to confirm the diagnostic potential of identified seminal biomarker candidates.</br&gt