Controls on the seasonal exchange of CH3Br in temperate peatlands

Measurements of CH3Br exchange at two New Hampshire peatlands (Sallie\u27s Fen and Angie\u27s Bog) indicate that net flux from these ecosystems is the sum of competing production and consumption processes. Net CH3Br fluxes were highly variable and ranged from net emission to net uptake between locations within a single peatland. At Sallie\u27s Fen, net CH3Br flux exhibited positive correlations with peat temperature and air temperature during all seasons sampled, but these relationships were not observed at Angie\u27s Bog where flux varied according to microtopography. The major CH3Br production process at Sallie\u27s Fen appeared dependent on aerobic conditions within the peat, while CH3Br production at Angie\u27s Bog was favored by anaerobic conditions. There was evidence of aerobic microbial consumption of CH3Br within the peat at both sites. In a vegetation removal experiment conducted at Sallie\u27s Fen with dynamic chambers, all collars exhibited net consumption of CH3Br. Net CH3Br flux had a negative correlation with surface temperature and a positive correlation with water level in collars with all vegetation clipped consistent with aerobic microbial consumption. Vegetated collars showed positive correlations between net CH3Br flux and air temperature. A positive correlation between net CH3Br flux and surface temperature was also observed in collars in which all vegetation except Sphagnum spp. were clipped. These correlations are consistent with seasonal relationships observed in 1998, 1999, and 2000 and suggest that plants and/or fungi are possible sources of CH3Br in peatlands. Estimates of production and consumption made on two occasions at Sallie\u27s Fen suggest that peatlands have lower rates of CH3Br consumption compared to upland ecosystems, but a close balance between production and consumption rates may allow these wetlands to act as either a net source or sink for this gas

Production of methyl bromide in a temperate forest soil

Field enclosure measurements of a temperate forest soil show net uptake of ambient methyl bromide (CH3Br), an important trace gas in both tropospheric and stratospheric ozone cycling. The net flux for 1999 was estimated to be −168 ± 72 μg CH3Br m−2 (negative indicates loss from the atmosphere). Individual enclosure flux measurements ranged from −4.0 to +3.3 μg CH3Br m−2 d−1. Soil consumption of CH3Br was estimated from laboratory soil incubations. Production of CH3Br was calculated as the difference between net flux and predicted consumption. Fungi could be responsible for the production of CH3Br in this temperate forest soil

Projected climate-induced faunal change in the western hemisphere

Climate change is predicted to be one of the greatest drivers of ecological change in the coming century. Increases in temperature over the last century have clearly been linked to shifts in species distributions. Given the magnitude of projected future climatic changes, we can expect even larger range shifts in the coming century. These changes will, in turn, alter ecological communities and the functioning of ecosystems. Despite the seriousness of predicted climate change, the uncertainty in climate-change projections makes it difficult for conservation managers and planners to proactively respond to climate stresses. To address one aspect of this uncertainty, we identified predictions of faunal change for which a high level of consensus was exhibited by different climate models. Specifically, we assessed the potential effects of 30 coupled atmosphere–ocean general circulation model (AOGCM) future-climate simulations on the geographic ranges of 2954 species of birds, mammals, and amphibians in the Western Hemisphere. Eighty percent of the climate projections based on a relatively low greenhouse-gas emissions scenario result in the local loss of at least 10% of the vertebrate fauna over much of North and South America. The largest changes in fauna are predicted for the tundra, Central America, and the Andes Mountains where, assuming no dispersal constraints, specific areas are likely to experience over 90% turnover, so that faunal distributions in the future will bear little resemblance to those of today

Evidence for Quadratic Tidal Tensor Bias from the Halo Bispectrum

The relation between the clustering properties of luminous matter in the form of galaxies and the underlying dark matter distribution is of fundamental importance for the interpretation of ongoing and upcoming galaxy surveys. The so called local bias model, where galaxy density is a function of local matter density, is frequently discussed as a means to infer the matter power spectrum or correlation function from the measured galaxy correlation. However, gravitational evolution generates a term quadratic in the tidal tensor and thus non-local in the density field, even if this term is absent in the initial conditions (Lagrangian space). Because the term is quadratic, it contributes as a loop correction to the power spectrum, so the standard linear bias picture still applies on large scales, however, it contributes at leading order to the bispectrum for which it is significant on all scales. Such a term could also be present in Lagrangian space if halo formation were influenced by the tidal field. We measure the corresponding coupling strengths from the matter-matter-halo bispectrum in numerical simulations and find a non-vanishing coefficient for the tidal tensor term. We find no scale dependence of the bias parameters up to k=0.1 h/Mpc and that the tidal effect is increasing with halo mass. While the Lagrangian bias picture is a better description of our results than the Eulerian bias picture, our results suggest that there might be a tidal tensor bias already in the initial conditions. We also find that the coefficients of the quadratic density term deviate quite strongly from the theoretical predictions based on the spherical collapse model and a universal mass function. Both quadratic density and tidal tensor bias terms must be included in the modeling of galaxy clustering of current and future surveys if one wants to achieve the high precision cosmology promise of these datasets.Comment: 14 pages, 4 figures, 1 tabl

Why Do Only Some Galaxy Clusters Have Cool Cores?

Flux-limited X-ray samples indicate that about half of rich galaxy clusters have cool cores. Why do only some clusters have cool cores while others do not? In this paper, cosmological N-body + Eulerian hydrodynamic simulations, including radiative cooling and heating, are used to address this question as we examine the formation and evolution of cool core (CC) and non-cool core (NCC) clusters. These adaptive mesh refinement simulations produce both CC and NCC clusters in the same volume. They have a peak resolution of 15.6 h^{-1} kpc within a (256 h^{-1} Mpc)^3 box. Our simulations suggest that there are important evolutionary differences between CC clusters and their NCC counterparts. Many of the numerical CC clusters accreted mass more slowly over time and grew enhanced cool cores via hierarchical mergers; when late major mergers occurred, the CC's survived the collisions. By contrast, NCC clusters experienced major mergers early in their evolution that destroyed embryonic cool cores and produced conditions that prevented CC re-formation. As a result, our simulations predict observationally testable distinctions in the properties of CC and NCC beyond the core regions in clusters. In particular, we find differences between CC versus NCC clusters in the shapes of X-ray surface brightness profiles, between the temperatures and hardness ratios beyond the cores, between the distribution of masses, and between their supercluster environs. It also appears that CC clusters are no closer to hydrostatic equilibrium than NCC clusters, an issue important for precision cosmology measurements.Comment: 17 emulateapj pages, 17 figures, replaced with version accepted to Ap

Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock

Whole-genome sequencing has provided fundamental insights into infectious disease epidemiology, but has rarely been used for examining transmission dynamics of a bacterial pathogen in wildlife. In the Greater Yellowstone Ecosystem (GYE), outbreaks of brucellosis have increased in cattle along with rising seroprevalence in elk. Here we use a genomic approach to examine Brucella abortus evolution, cross-species transmission and spatial spread in the GYE. We find that brucellosis was introduced into wildlife in this region at least five times. The diffusion rate varies among Brucella lineages (∼3 to 8 km per year) and over time. We also estimate 12 host transitions from bison to elk, and 5 from elk to bison. Our results support the notion that free-ranging elk are currently a self-sustaining brucellosis reservoir and the source of livestock infections, and that control measures in bison are unlikely to affect the dynamics of unrelated strains circulating in nearby elk populations

CD4+ lymphocyte adenosine triphosphate determination in sepsis: a cohort study

INTRODUCTION: Patients suffering from sepsis are currently classified on a clinical basis (i.e., sepsis, severe sepsis, septic shock); however, this clinical classification may not accurately reflect the overall immune status of an individual patient. Our objective was to describe a cohort of patients with sepsis in terms of their measured immune status. METHODS: Fifty-two patients with sepsis (n = 13), severe sepsis (n = 21), or septic shock (n = 18) were studied. The immune status was determined by measuring the CD4+ lymphocyte adenosine triphosphate (ATP) content after mitogen stimulation in whole blood. RESULTS: The measured CD4+ lymphocyte ATP content at the time of ICU admission did not differ among the various groups defined by the sepsis classification system (sepsis = 454 ± 79 ng/ml; severe sepsis = 359 ± 54 ng/ml; septic shock = 371 ± 53 ng/ml; P = 0.44). Furthermore, survivors of sepsis had a significantly higher CD4+ lymphocyte ATP content at the time of ICU admission than did nonsurvivors of sepsis (431 ± 41 ng/mL vs. 266 ± 53 ng/mL, respectively; P = 0.04). CONCLUSIONS: The sepsis classification system that is currently used is not representative of the individual immune status as determined by measuring the CD4+ lymphocyte ATP content. Moreover, a lower CD4+ ATP content at the time of ICU admission is associated with a worse clinical outcome in those suffering from sepsis

Two New Gravitationally Lensed Double Quasars from the Sloan Digital Sky Survey

We report the discoveries of the two-image gravitationally lensed quasars, SDSS J0746+4403 and SDSS J1406+6126, selected from the Sloan Digital Sky Survey (SDSS). SDSS J0746+4403, which will be included in our lens sample for statistics and cosmology, has a source redshift of z_s=2.00, an estimated lens redshift of z_l~0.3, and an image separation of 1.08". SDSS J1406+6126 has a source redshift of z_s=2.13, a spectroscopically measured lens redshift of z_l=0.27, and an image separation of 1.98". We find that the two quasar images of SDSS J1406+6126 have different intervening MgII absorption strengths, which are suggestive of large variations of absorbers on kpc scales. The positions and fluxes of both the lensed quasar systems are easily reproduced by simple mass models with reasonable parameter values. These objects bring to 18 the number of lensed quasars that have been discovered from the SDSS data.Comment: 25 pages, 6 figures, The Astronomical Journal accepte

Good Animals in Bad Places: Evaluating Landscape Attributes Associated with Elk Vulnerability to Wolf Predation

Vulnerability of prey to predators is heavily influenced by their respective physical and behavioral characteristics; however their interactions with landscape, and climate, collectively termed “environmental vulnerability,” may also assume considerable importance. Little is known about the impact of environmental vulnerability in large mammal systems, where post-encounter vulnerability may assume more importance than encounter probability. This study utilized 18 years of survival and mortality data for radio-collared elk (Cervus elaphus), in concert with abundance, distribution, and habitat use data prior to and following restoration of wolves (Canis lupus) to Yellowstone National Park to evaluate the relationship between environmental attributes and elk mortality. We modeled the odds of mortality for 108 elk in 1257 animal sample intervals from 1991-2009 across a range of environmental conditions and gradients of wolf predation risk to evaluate: 1) The relationship between landscape, habitat, and environmental attributes and elk vulnerability to wolf predation and 2) Changes in the attributes related to elk mortality before and after wolf colonization. In the absence of wolf predation, mortality risk for elk was primarily associated with physical attributes of elk known to influence starvation mortality. Following wolf reintroduction mortality risk was more strongly associated with characteristics of the landscape and climate within an animal’s home range. These environmental influences resulted in substantial changes in distribution and abundance of elk in the study system and suggests environmental heterogeneity may have an important influence on wolf and elk distributions and dynamics

Good practices for a literature survey are not followed by authors while preparing scientific manuscripts

The number of citations received by authors in scientific journals has become a major parameter to assess individual researchers and the journals themselves through the impact factor. A fair assessment therefore requires that the criteria for selecting references in a given manuscript should be unbiased with respect to the authors or the journals cited. In this paper, we advocate that authors should follow two mandatory principles to select papers (later reflected in the list of references) while studying the literature for a given research: i) consider similarity of content with the topics investigated, lest very related work should be reproduced or ignored; ii) perform a systematic search over the network of citations including seminal or very related papers. We use formalisms of complex networks for two datasets of papers from the arXiv repository to show that neither of these two criteria is fulfilled in practice