Seabird bycatch in New Zealand trawl and longline fisheries, 1998-2004

Fisheries bycatch is a threatening process for populations of procellariiform seabirds, and is of particular importance for the conservation of albatross, an especially threatened group at a global scale. There is a high level ofendemism of albatross and petrels in New Zealand waters, and around one-third of the world's species of procellariiform seabirds breed in this area. Therefore, understanding the levels of mortality of these species in the New Zealand Exclusive Economic Zone is important for global conservation of the order. For New Zealand fisheries for the 1998-2004 fishing years, we estimated total seabird bycatch using data from scientific observers with model-based estimation procedures. Although sectors of the fishing activity were not evenly covered by observers, we were able to estimate seabird bycatch for large scale fisheries by vessel size (split at 28 m length), season, area and year. Approximately 5500 seabirds (credible interval between 2000 and 10 000) are estimated to be landed in New Zealand trawl and longline fisheries annually, as a result of interactions with fishing gear. Few data were available for the small vessels, thus estimates are highly uncertain. Mortalities are likely to be most common in trawl fisheries at approximately 2000-3000 seabirds annually, with the greatest contribution coming from large vessels. Around one half of these birds were albatross. For large surface longline vessels we estimated that fewer than 500 seabirds were killed annually during the main tuna fishing season. For large demersal vessels, seabird mortality was estimated to have decreased from around 1800 seabirds in 2001 to 600 seabirds in 2004. We report observed captures by species for each fishing method and area for the fishing years 1998-2004. Thirty-one species of Procellariiformes were identified during this period, over half of which are threatened species. For some species, such as White-chinned Petrel, Procellaria aequinoctialis and White-capped Albatross, 1halassarche steadi, several hundred individuals were caught. For 15 species, fewer than 10 individuals were identified. However, the unrepresentative deployment ofobserver coverage across fishery areas makes it difficult to interpret the conservation implications of species captures. A high proportion of the petrel species was observed caught primarily from areas surrounding their breeding sites while albatross were caught across breeding and non-breeding areas. Greatly improved observer sampling ratios, and studies of population status and trends, are needed to understand the conservation implications of the effects of New Zealand trawl and longline fishing mortalities on seabird populations

Use of radar detectors to track attendance of albatrosses at fishing vessels.

Despite international waters covering over 60% of the world's oceans, our understanding of how fisheries in these regions shape ecosystem processes is surprisingly poor. Seabirds are known to forage at fishing vessels, with potential deleterious effects for their population, but the extent of overlap and behavior in relation to ships are poorly known. Using novel biologging devices, which can detect radar emissions to record the position of boats and seabirds, we measured the true extent of the overlap between seabirds and fishing vessels, and generated estimates of the intensity of fishing and distribution of vessels in international waters. During breeding, wandering albatrosses from the Crozet islands patrolled an area of more than 10 million square kilometers and as much as 79.5% of birds equipped with loggers detected vessels, at distances up to 2500 km from the colony, modifying their natural foraging behavior to attend boats. The extent of this overlap has widespread implications for bycatch risk in seabirds and reveals the areas of intense fishing throughout the ocean. We suggest that seabirds equipped with radar detectors are excellent monitors of the presence of vessels in the southern ocean, offering a new way to monitor fisheries. The method used opens new perspectives to monitor the presence of illegal fisheries and to better understand the impact of fisheries on seabirds. This article is protected by copyright. All rights reserved

Structure-Based Design of Potent and Selective Leishmania N-Myristoyltransferase Inhibitors

Inhibitors of Leishmania N-myristoyltransferase (NMT), a potential target for the treatment of leishmaniasis, obtained from a high-throughput screen, were resynthesized to validate activity. Crystal structures bound to Leishmania major NMT were obtained, and the active diastereoisomer of one of the inhibitors was identified. On the basis of structural insights, enzyme inhibition was increased 40-fold through hybridization of two distinct binding modes, resulting in novel, highly potent Leishmania donovani NMT inhibitors with good selectivity over the human enzyme

Subcellular fractionation method to study endosomal trafficking of Kaposi’s sarcoma-associated herpesvirus

Background Virus entry involves multiple steps and is a highly orchestrated process on which successful infection collectively depends. Entry processes are commonly analyzed by monitoring internalized virus particles via Western blotting, polymerase chain reaction, and imaging techniques that allow scientist to track the intracellular location of the pathogen. Such studies have provided abundant direct evidence on how viruses interact with receptor molecules on the cell surface, induce cell signaling at the point of initial contact with the cell to facilitate internalization, and exploit existing endocytic mechanisms of the cell for their ultimate infectious agenda. However, there is dearth of knowledge in regards to trafficking of a virus via endosomes. Herein, we describe an optimized laboratory procedure to isolate individual organelles during different stages of endocytosis by performing subcellular fractionation. This methodology is established using Kaposi’s sarcoma-associated herpesvirus (KSHV) infection of human foreskin fibroblast (HFF) cells as a model. With KSHV and other herpesviruses alike, envelope glycoproteins have been widely reported to physically engage target cell surface receptors, such as integrins, in interactions leading to entry and subsequent infection. Results Subcellular fractionation was used to isolate early and late endosomes (EEs and LEs) by performing a series of centrifugations steps. Specifically, a centrifugation step post-homogenization was utilized to obtain the post-nuclear supernatant containing intact intracellular organelles in suspension. Successive fractionation via sucrose density gradient centrifugation was performed to isolate specific organelles including EEs and LEs. Intracellular KSHV trafficking was directly traced in the isolated endosomal fractions. Additionally, the subcellular fractionation approach demonstrates a key role for integrins in the endosomal trafficking of KSHV. The results obtained from fractionation studies corroborated those obtained by traditional imaging studies. Conclusions This study is the first of its kind to employ a sucrose flotation gradient assay to map intracellular KSHV trafficking in HFF cells. We are confident that such an approach will serve as a powerful tool to directly study intracellular trafficking of a virus, signaling events occurring on endosomal membranes, and dynamics of molecular events within endosomes that are crucial for uncoating and virus escape into the cytosol

Inhibition of constitutive and cxc-chemokine-induced NF-κB activity potentiates ansamycin-based HSP90-inhibitor cytotoxicity in castrate-resistant prostate cancer cells

Background: We determined how CXC-chemokine signalling and necrosis factor-B (NF-B) activity affected heat-shock protein 90 (Hsp90) inhibitor (geldanamycin (GA) and 17-allylamino-demethoxygeldanamycin (17-AAG)) cytotoxicity in castrate-resistant prostate cancer (CRPC).Methods:Geldanamycin and 17-AAG toxicity, together with the CXCR2 antagonist AZ10397767 or NF-B inhibitor BAY11-7082, was assessed by 3-(4, 5-Dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide assay in two CRPC lines, DU145 and PC3. Flow cytometry quantified apoptotic or necrosis profiles. Necrosis factor-B activity was determined by luciferase readouts or indirectly by quantitative PCR and ELISA-based determination of CXCL8 expression.Results:Geldanamycin and 17-AAG reduced PC3 and DU145 cell viability, although PC3 cells were less sensitive. Addition of AZ10397767 increased GA (e.g., PC3 IC 20: from 1.670.4 to 0.180.2 nM) and 17-AAG (PC3 IC 20: 43.77.8 to 0.641.8 nM) potency in PC3 but not DU145 cells. Similarly, BAY11-7082 increased the potency of 17-AAG in PC3 but not in DU145 cells, correlating with the elevated constitutive NF-B activity in PC3 cells. AZ10397767 increased 17-AAG-induced apoptosis and necrosis and decreased NF-B activity/CXCL8 expression in 17-AAG-treated PC3 cells.Conclusion:Ansamycin cytotoxicity is enhanced by inhibiting NF-B activity and/or CXC-chemokine signalling in CRPC cells. Detecting and/or inhibiting NF-B activity may aid the selection and treatment response of CRPC patients to Hsp90 inhibitors.</p

Differential Dynamics of Transposable Elements during Long-Term Diploidization of Nicotiana Section Repandae (Solanaceae) Allopolyploid Genomes

PubMed ID: 23185607This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

Evolutionary relationships among barley and <i>Arabidopsis</i> core circadian clock and clock-associated genes

The circadian clock regulates a multitude of plant developmental and metabolic processes. In crop species, it contributes significantly to plant performance and productivity and to the adaptation and geographical range over which crops can be grown. To understand the clock in barley and how it relates to the components in the Arabidopsis thaliana clock, we have performed a systematic analysis of core circadian clock and clock-associated genes in barley, Arabidopsis and another eight species including tomato, potato, a range of monocotyledonous species and the moss, Physcomitrella patens. We have identified orthologues and paralogues of Arabidopsis genes which are conserved in all species, monocot/dicot differences, species-specific differences and variation in gene copy number (e.g. gene duplications among the various species). We propose that the common ancestor of barley and Arabidopsis had two-thirds of the key clock components identified in Arabidopsis prior to the separation of the monocot/dicot groups. After this separation, multiple independent gene duplication events took place in both monocot and dicot ancestors. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00239-015-9665-0) contains supplementary material, which is available to authorized users

Spatio-temporal Models of Lymphangiogenesis in Wound Healing

Several studies suggest that one possible cause of impaired wound healing is failed or insufficient lymphangiogenesis, that is the formation of new lymphatic capillaries. Although many mathematical models have been developed to describe the formation of blood capillaries (angiogenesis), very few have been proposed for the regeneration of the lymphatic network. Lymphangiogenesis is a markedly different process from angiogenesis, occurring at different times and in response to different chemical stimuli. Two main hypotheses have been proposed: 1) lymphatic capillaries sprout from existing interrupted ones at the edge of the wound in analogy to the blood angiogenesis case; 2) lymphatic endothelial cells first pool in the wound region following the lymph flow and then, once sufficiently populated, start to form a network. Here we present two PDE models describing lymphangiogenesis according to these two different hypotheses. Further, we include the effect of advection due to interstitial flow and lymph flow coming from open capillaries. The variables represent different cell densities and growth factor concentrations, and where possible the parameters are estimated from biological data. The models are then solved numerically and the results are compared with the available biological literature.Comment: 29 pages, 9 Figures, 6 Tables (39 figure files in total