28 research outputs found

    A New Monte Carlo Algorithm for Protein Folding

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    We demonstrate that the recently proposed pruned-enriched Rosenbluth method (P. Grassberger, Phys. Rev. E 56 (1997) 3682) leads to extremely efficient algorithms for the folding of simple model proteins. We test them on several models for lattice heteropolymers, and compare to published Monte Carlo studies. In all cases our algorithms are faster than all previous ones, and in several cases we find new minimal energy states. In addition to ground states, our algorithms give estimates for the partition sum at finite temperatures.Comment: 4 pages, Latex incl. 3 eps-figs., submitted to Phys. Rev. Lett., revised version with changes in the tex

    Wood Decay Fungi Restore Essential Calcium to Acidic Soils in Northern New England

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    The depletion of root-available calcium in northern forests soils exposed to decades of increased acid deposition adversely affects forest health and productivity. Laboratory studies indicated the potential of wood-decay fungi to restore lost calcium to the rooting zone of trees. This study reports changes in concentrations of Ca, Mg, and K during decay of sapwood of spruce, maple, hemlock, and birch at two locations in northern New England, USA. Concentrations of exchangeable Ca, Mg, and Al in decayed wood residues after 10 and 12 years of ground contact were also compared. Significant loss of mass indicated by decreasing wood density occurred after two to eight years in conifers and after only two years in hardwoods. A significant gain in wood K was observed at two years, but the gain was not sustained. A significant gain in Ca concentration occurred by six years and that gain was sustained for 12 years. Concentrations of Mg varied. No significant difference in exchangeable Ca concentration was observed between decayed wood residue of spruce and maple and the forest floor. However, decayed wood residue had a much lower molar Al/Ca ratio, a conditional characteristic of sites with high root-available Ca

    Dendrochemical patterns of calcium, zinc, and potassium related to internal factors detected by energy dispersive X-ray fluorescence (EDXRF).

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    International audienceEnergy dispersive X-ray fluorescence (EDXRF) provides highly sensitive and precise spatial resolution of cation content in individual annual growth rings in trees. The sensitivity and precision have prompted successful applications to forensic dendrochemistry and the timing of environmental releases of contaminants. These applications have highlighted the need to distinguish dendrochemical effects of internal processes from environmental contamination. Calcium, potassium, and zinc are three marker cations that illustrate the influence of these processes. We found changes in cation chemistry in tree rings potentially due to biomineralization, development of cracks or checks, heartwood/sapwood differentiation, intra-annual processes, and compartmentalization of infection. Distinguishing internal from external processes that affect dendrochemistry will enhance the value of EDXRF for both physiological and forensic investigations

    Declining Acidic Deposition Begins Reversal of Forest-Soil Acidification in the Northeastern U.S. and Eastern Canada

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    Decreasing trends in acidic deposition levels over the past several decades have led to partial chemical recovery of surface waters. However, depletion of soil Ca from acidic deposition has slowed surface water recovery and led to the impairment of both aquatic and terrestrial ecosystems. Nevertheless, documentation of acidic deposition effects on soils has been limited, and little is known regarding soil responses to ongoing acidic deposition decreases. In this study, resampling of soils in eastern Canada and the northeastern U.S. was done at 27 sites exposed to reductions in wet SO<sub>4</sub><sup>2–</sup> deposition of 5.7–76%, over intervals of 8–24 y. Decreases of exchangeable Al in the O horizon and increases in pH in the O and B horizons were seen at most sites. Among all sites, reductions in SO<sub>4</sub><sup>2–</sup> deposition were positively correlated with ratios (final sampling/initial sampling) of base saturation (<i>P</i> < 0.01) and negatively correlated with exchangeable Al ratios (<i>P</i> < 0.05) in the O horizon. However, base saturation in the B horizon decreased at one-third of the sites, with no increases. These results are unique in showing that the effects of acidic deposition on North American soils have begun to reverse
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