High-value compound induction by flashing light in Diacronema lutheri and Tetraselmis striata CTP4

Phototrophic microalgae use light to produce biomass and high-value compounds, such as pigments and polyunsaturated fatty acids (PUFA), for food and feed. These biomolecules can be induced by flashing light during the final growth stage. We tested different exposure times (1–6 days) of flashing light (f = 0.5, 5, 50 Hz; duty cycle = 0.05) on biomass, pigment and fatty acid productivity in Diacronema lutheri and Tetraselmis striata. A three-day exposure to low-frequency (5 Hz) flashing light successfully increased the production of fucoxanthin, diatoxanthin, eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids in D. lutheri up to 4.6-fold and of lutein, zeaxanthin and EPA in T. striata up to 1.3-fold compared to that of continuous light. Biomass productivity declined 2-fold for D. lutheri and remained similar for T. striata compared to that of continuous light. Thus, short-term treatments of flashing light may be promising for industrial algal production to increase biomass value.publishedVersio

Ecogenomics and Taxonomy of Cyanobacteria Phylum

Cyanobacteria are major contributors to global biogeochemical cycles. The genetic diversity among Cyanobacteria enables them to thrive across many habitats, although only a few studies have analyzed the association of phylogenomic clades to specific environmental niches. In this study, we adopted an ecogenomics strategy with the aim to delineate ecological niche preferences of Cyanobacteria and integrate them to the genomic taxonomy of these bacteria. First, an appropriate phylogenomic framework was established using a set of genomic taxonomy signatures (including a tree based on conserved gene sequences, genome-to-genome distance, and average amino acid identity) to analyse ninety-nine publicly available cyanobacterial genomes. Next, the relative abundances of these genomes were determined throughout diverse global marine and freshwater ecosystems, using metagenomic data sets. The whole-genome-based taxonomy of the ninety-nine genomes allowed us to identify 57 (of which 28 are new genera) and 87 (of which 32 are new species) different cyanobacterial genera and species, respectively. The ecogenomic analysis allowed the distinction of three major ecological groups of Cyanobacteria (named as i. Low Temperature; ii. Low Temperature Copiotroph; and iii. High Temperature Oligotroph) that were coherently linked to the genomic taxonomy. This work establishes a new taxonomic framework for Cyanobacteria in the light of genomic taxonomy and ecogenomic approaches

Ecogenomics and Taxonomy of Cyanobacteria Phylum

Cyanobacteria are major contributors to global biogeochemical cycles. The genetic diversity among Cyanobacteria enables them to thrive across many habitats, although only a few studies have analyzed the association of phylogenomic clades to specific environmental niches. In this study, we adopted an ecogenomics strategy with the aim to delineate ecological niche preferences of Cyanobacteria and integrate them to the genomic taxonomy of these bacteria. First, an appropriate phylogenomic framework was established using a set of genomic taxonomy signatures (including a tree based on conserved gene sequences, genome-to-genome distance, and average amino acid identity) to analyse ninety-nine publicly available cyanobacterial genomes. Next, the relative abundances of these genomes were determined throughout diverse global marine and freshwater ecosystems, using metagenomic data sets. The whole-genome-based taxonomy of the ninety-nine genomes allowed us to identify 57 (of which 28 are new genera) and 87 (of which 32 are new species) different cyanobacterial genera and species, respectively. The ecogenomic analysis allowed the distinction of three major ecological groups of Cyanobacteria (named as i. Low Temperature; ii. Low Temperature Copiotroph; and iii. High Temperature Oligotroph) that were coherently linked to the genomic taxonomy. This work establishes a new taxonomic framework for Cyanobacteria in the light of genomic taxonomy and ecogenomic approaches

Ecogenomics and Taxonomy of Cyanobacteria Phylum

Cyanobacteria are major contributors to global biogeochemical cycles. The genetic diversity among Cyanobacteria enables them to thrive across many habitats, although only a few studies have analyzed the association of phylogenomic clades to specific environmental niches. In this study, we adopted an ecogenomics strategy with the aim to delineate ecological niche preferences of Cyanobacteria and integrate them to the genomic taxonomy of these bacteria. First, an appropriate phylogenomic framework was established using a set of genomic taxonomy signatures (including a tree based on conserved gene sequences, genome-to-genome distance, and average amino acid identity) to analyse ninety-nine publicly available cyanobacterial genomes. Next, the relative abundances of these genomes were determined throughout diverse global marine and freshwater ecosystems, using metagenomic data sets. The whole-genome-based taxonomy of the ninety-nine genomes allowed us to identify 57 (of which 28 are new genera) and 87 (of which 32 are new species) different cyanobacterial genera and species, respectively. The ecogenomic analysis allowed the distinction of three major ecological groups of Cyanobacteria (named as i. Low Temperature; ii. Low Temperature Copiotroph; and iii. High Temperature Oligotroph) that were coherently linked to the genomic taxonomy. This work establishes a new taxonomic framework for Cyanobacteria in the light of genomic taxonomy and ecogenomic approaches

Draft Genome Sequence of Muricauda sp. Strain K001 Isolated from a Marine Cyanobacterial Culture.

We report the whole-genome sequence of Muricauda sp. strain K001 isolated from a marine cyanobacterial culture. This genome sequence will improve our understanding of the influence of heterotrophic bacteria on the physiology of cyanobacteria and may contribute to the development of new natural products

Draft Genome Sequence of Muricauda sp. Strain K001 Isolated from a Marine Cyanobacterial Culture.

We report the whole-genome sequence of Muricauda sp. strain K001 isolated from a marine cyanobacterial culture. This genome sequence will improve our understanding of the influence of heterotrophic bacteria on the physiology of cyanobacteria and may contribute to the development of new natural products

Microbial processes driving coral reef organic carbon flow

Coral reefs are one of the most productive ecosystems on the planet, with primary production rates compared to that of rain forests. Benthic organisms release 10-50% of their gross organic production as mucus that stimulates heterotrophic microbial metabolism in the water column. As a result, coral reef microbes grow up to 50 times faster than open ocean communities. Anthropogenic disturbances cause once coral-dominated reefs to become dominated by fleshy organisms, with several outcomes for trophic relationships. Here we review microbial processes implicated in organic carbon flux in coral reefs displaying species phase shifts. The first section presents microbial players and interactions within the coral holobiont that contribute to reef carbon flow. In the second section, we identify four ecosystem-level microbial features that directly respond to benthic species phase shifts: community composition, biomass, metabolism and viral predation. The third section discusses the significance of microbial consumption of benthic organic matter to reef trophic relationships. In the fourth section, we propose that the 'microbial phase shifts' discussed here are conducive to lower resilience, facilitating the transition to new degradation states in coral reefs

High-value compound induction by flashing light in Diacronema lutheri and Tetraselmis striata CTP4

Phototrophic microalgae use light to produce biomass and high-value compounds, such as pigments and polyunsaturated fatty acids (PUFA), for food and feed. These biomolecules can be induced by flashing light during the final growth stage. We tested different exposure times (1–6 days) of flashing light (f = 0.5, 5, 50 Hz; duty cycle = 0.05) on biomass, pigment and fatty acid productivity in Diacronema lutheri and Tetraselmis striata. A three-day exposure to low-frequency (5 Hz) flashing light successfully increased the production of fucoxanthin, diatoxanthin, eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids in D. lutheri up to 4.6-fold and of lutein, zeaxanthin and EPA in T. striata up to 1.3-fold compared to that of continuous light. Biomass productivity declined 2-fold for D. lutheri and remained similar for T. striata compared to that of continuous light. Thus, short-term treatments of flashing light may be promising for industrial algal production to increase biomass value

High-value compound induction by flashing light in Diacronema lutheri and Tetraselmis striata CTP4

Phototrophic microalgae use light to produce biomass and high-value compounds, such as pigments and polyunsaturated fatty acids (PUFA), for food and feed. These biomolecules can be induced by flashing light during the final growth stage. We tested different exposure times (1–6 days) of flashing light (f = 0.5, 5, 50 Hz; duty cycle = 0.05) on biomass, pigment and fatty acid productivity in Diacronema lutheri and Tetraselmis striata. A three-day exposure to low-frequency (5 Hz) flashing light successfully increased the production of fucoxanthin, diatoxanthin, eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids in D. lutheri up to 4.6-fold and of lutein, zeaxanthin and EPA in T. striata up to 1.3-fold compared to that of continuous light. Biomass productivity declined 2-fold for D. lutheri and remained similar for T. striata compared to that of continuous light. Thus, short-term treatments of flashing light may be promising for industrial algal production to increase biomass value

Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil)

<div><p>Turfs are widespread assemblages (consisting of microbes and algae) that inhabit reef systems. They are the most abundant benthic component in the Abrolhos reef system (Brazil), representing greater than half the coverage of the entire benthic community. Their presence is associated with a reduction in three-dimensional coral reef complexity and decreases the habitats available for reef biodiversity. Despite their importance, the taxonomic and functional diversity of turfs remain unclear. We performed a metagenomics and pigments profile characterization of turfs from the Abrolhos reefs. Turf microbiome primarily encompassed Proteobacteria (mean 40.57% ± s.d. 10.36, N = 1.548,192), Cyanobacteria (mean 35.04% ± s.d. 15.5, N = 1.337,196), and Bacteroidetes (mean 11.12% ± s.d. 4.25, N = 424,185). Oxygenic and anoxygenic phototrophs, chemolithotrophs, and aerobic anoxygenic phototrophic (AANP) bacteria showed a conserved functional trait of the turf microbiomes. Genes associated with oxygenic photosynthesis, AANP, sulfur cycle (S oxidation, and DMSP consumption), and nitrogen metabolism (N₂ fixation, ammonia assimilation, dissimilatory nitrate and nitrite ammonification) were found in the turf microbiomes. Principal component analyses of the most abundant taxa and functions showed that turf microbiomes differ from the other major Abrolhos benthic microbiomes (i.e., corals and rhodoliths) and seawater. Taken together, these features suggest that turfs have a homogeneous functional core across the Abrolhos Bank, which holds diverse microbial guilds when comparing with other benthic organisms.</p></div