Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network

We present the first gene regulatory network (GRN) that pertains to post-developmental gene expression. Specifically, we mapped a transcription regulatory network of Caenorhabditis elegans metabolic gene promoters using gene-centered yeast one-hybrid assays. We found that the metabolic GRN is enriched for nuclear hormone receptors (NHRs) compared with other gene-centered regulatory networks, and that these NHRs organize into functional network modules.The NHR family has greatly expanded in nematodes; C. elegans has 284 NHRs, whereas humans have only 48. We show that the NHRs in the metabolic GRN have metabolic phenotypes, suggesting that they do not simply function redundantly.The mediator subunit MDT-15 preferentially interacts with NHRs that occur in the metabolic GRN.We describe an NHR circuit that responds to nutrient availability and propose a model for the evolution and organization of NHRs in C. elegans metabolic regulatory networks

Helioseismology, solar models and neutrino fluxes

We present our results concerning a systematical analysis of helioseismic implications on solar structure and neutrino production. We find Y$_{ph}=0.238-0.259$, $R_b/R_\odot=0.708-0.714$ and $\rho_b=(0.185-0.199)$ gr/cm$^3$. In the interval $0.2<R/R_\odot<0.65$, the quantity $U=P/\rho$ is determined with and accuracy of $\pm 5$\permille~or better. At the solar center still one has remarkable accuracy, $\Delta U/U <4$. We compare the predictions of recent solar models (standard and non-standard) with the helioseismic results. By constructing helioseismically constrained solar models, the central solar temperature is found to be $T=1.58 \times 10^7$K with a conservatively estimated accuracy of 1.4%, so that the major unceratainty on neutrino fluxes is due to nuclear cross section and not to solar inputs.Comment: 14 pages including 9 figures, LaTex file, espcrc2.sty is needed; to appear in Nucl. Phys. B Proc. Suppl., Proceedings of TAUP97 conference, Laboratori Nazionali del Gran Sasso, September 199

FILOU oscillation code

The present paper provides a description of the oscillation code FILOU, its main features, type of applications it can be used for, and some representative solutions. The code is actively involved in CoRoT/ESTA exercises (this volume) for the preparation for the proper interpretation of space data from the CoRoT mission. Although CoRoT/ESTA exercises have been limited to the oscillations computations for non-rotating models, the main characteristic of FILOU is, however, the computation of radial and non-radial oscillation frequencies in presence of rotation. In particular, FILOU calculates (in a perturbative approach) adiabatic oscillation frequencies corrected for the effects of rotation (up to the second order in the rotation rate) including near degeneracy effects. Furthermore, FILOU works with either a uniform rotation or a radial differential rotation profile (shellular rotation), feature which makes the code singular in the field.Comment: 6 pages, 5 figures. Astrophysics and Space Science (in press

Helioseismic constraints to the central solar temperature and neutrino fluxes

The central solar temperature T and its uncertainties are calculated in helioseismologically-constrained solar models. From the best fit to the convective radius, density at the convective radius and seismically determined helium abundance the central temperature is found to be T=1.58x10^7 K, in excellent agreement with Standard Solar Models. Conservatively, we estimate that the accuracy of this determination is Delta T/T=1.4 %, better than that in SSM. Neutrino fluxes are calculated. The lower limit to the boron neutrino flux, obtained with maximum reduction factors from all sources of uncertainties, is 2 sigma higher than the flux measured recently by SuperKamiokande.Comment: Latex, 10 pages, uses revtex styles (included), 3 postscript figure

Interpreting Helioseismic Structure Inversion Results of Solar Active Regions

Helioseismic techniques such as ring-diagram analysis have often been used to determine the subsurface structural differences between solar active and quiet regions. Results obtained by inverting the frequency differences between the regions are usually interpreted as the sound-speed differences between them. These in turn are used as a measure of temperature and magnetic-field strength differences between the two regions. In this paper we first show that the "sound-speed" difference obtained from inversions is actually a combination of sound-speed difference and a magnetic component. Hence, the inversion result is not directly related to the thermal structure. Next, using solar models that include magnetic fields, we develop a formulation to use the inversion results to infer the differences in the magnetic and thermal structures between active and quiet regions. We then apply our technique to existing structure inversion results for different pairs of active and quiet regions. We find that the effect of magnetic fields is strongest in a shallow region above 0.985R_sun and that the strengths of magnetic-field effects at the surface and in the deeper (r < 0.98R_sun) layers are inversely related, i.e., the stronger the surface magnetic field the smaller the magnetic effects in the deeper layers, and vice versa. We also find that the magnetic effects in the deeper layers are the strongest in the quiet regions, consistent with the fact that these are basically regions with weakest magnetic fields at the surface. Because the quiet regions were selected to precede or follow their companion active regions, the results could have implications about the evolution of magnetic fields under active regions.Comment: Accepted for publication in Solar Physic

Seismology of the Sun : Inference of Thermal, Dynamic and Magnetic Field Structures of the Interior

Recent overwhelming evidences show that the sun strongly influences the Earth's climate and environment. Moreover existence of life on this Earth mainly depends upon the sun's energy. Hence, understanding of physics of the sun, especially the thermal, dynamic and magnetic field structures of its interior, is very important. Recently, from the ground and space based observations, it is discovered that sun oscillates near 5 min periodicity in millions of modes. This discovery heralded a new era in solar physics and a separate branch called helioseismology or seismology of the sun has started. Before the advent of helioseismology, sun's thermal structure of the interior was understood from the evolutionary solution of stellar structure equations that mimicked the present age, mass and radius of the sun. Whereas solution of MHD equations yielded internal dynamics and magnetic field structure of the sun's interior. In this presentation, I review the thermal, dynamic and magnetic field structures of the sun's interior as inferred by the helioseismology.Comment: To be published in the proceedings of the meeting "3rd International Conference on Current Developments in Atomic, Molecular, Optical and Nano Physics with Applications", December 14-16, 2011, New Delhi, Indi

Does Solar Physics Provide Constraints to Weakly Interacting Massive Particles?

We investigate whether present data on helioseismology and solar neutrino fluxes may constrain WIMP--matter interactions in the range of WIMP parameters under current exploration in WIMP searches. We find that, for a WIMP mass of 30 GeV, once the effect of the presence of WIMPs in the Sun's interior is maximized, the squared isothermal sound speed is modified, with respect to the standard solar model, by at most 0.4% at the Sun's center. The maximal effect on the Boron-8 solar neutrino flux is a reduction of 4.5%. Larger masses lead to smaller effects. These results imply that present sensitivities in the measurements of solar properties, though greatly improved in recent years, do not provide information or constraints on WIMP properties of relevance for dark matter. Furthermore, we show that, when current bounds from direct WIMP searches are taken into account, the effect induced by WIMPs with dominant coherent interactions are drastically reduced as compared to the values quoted above. The case of neutralinos in the minimal supersymmetric standard model is also discussed.Comment: 31 pages, 2 tables and 9 figures, typeset with ReVTeX4. The paper may also be found at http://www.to.infn.it/~fornengo/papers/helio.ps.gz or through http://www.to.infn.it/astropart/index.htm

The Measurement of Solar Diameter and Limb Darkening Function with the Eclipse Observations

The Total Solar Irradiance varies over a solar cycle of 11 years and maybe over cycles with longer period. Is the solar diameter variable over time too? We introduce a new method to perform high resolution astrometry of the solar diameter from the ground, through the observations of eclipses by reconsidering the definition of the solar edge. A discussion of the solar diameter and its variations must be linked to the Limb Darkening Function (LDF) using the luminosity evolution of a Baily's Bead and the profile of the lunar limb available from satellite data. This approach unifies the definition of solar edge with LDF inflection point for eclipses and drift-scan or heliometric methods. The method proposed is applied for the videos of the eclipse in 15 January 2010 recorded in Uganda and in India. The result shows light at least 0.85 arcsec beyond the inflection point, and this suggests to reconsider the evaluations of the historical eclipses made with naked eye.Comment: 16 pages, 11 figures, accepted in Solar Physics. arXiv admin note: text overlap with arXiv:astro-ph/0601109 by other author

CoRoT/ESTA-TASK 1 and TASK 3 comparison of the internal structure and seismic properties of representative stellar models: Comparisons between the ASTEC, CESAM, CLES, GARSTEC and STAROX codes

We compare stellar models produced by different stellar evolution codes for the CoRoT/ESTA project, comparing their global quantities, their physical structure, and their oscillation properties. We discuss the differences between models and identify the underlying reasons for these differences. The stellar models are representative of potential CoRoT targets. Overall we find very good agreement between the five different codes, but with some significant deviations. We find noticeable discrepancies (though still at the per cent level) that result from the handling of the equation of state, of the opacities and of the convective boundaries. The results of our work will be helpful in interpreting future asteroseismology results from CoRoT.Comment: 26 pages, 21 figures, accepted for publication in Astrophysics and Space Science, CoRoT/ESTA Volum

Asteroseismology of Eclipsing Binary Stars in the Kepler Era

Eclipsing binary stars have long served as benchmark systems to measure fundamental stellar properties. In the past few decades, asteroseismology - the study of stellar pulsations - has emerged as a new powerful tool to study the structure and evolution of stars across the HR diagram. Pulsating stars in eclipsing binary systems are particularly valuable since fundamental properties (such as radii and masses) can determined using two independent techniques. Furthermore, independently measured properties from binary orbits can be used to improve asteroseismic modeling for pulsating stars in which mode identifications are not straightforward. This contribution provides a review of asteroseismic detections in eclipsing binary stars, with a focus on space-based missions such as CoRoT and Kepler, and empirical tests of asteroseismic scaling relations for stochastic ("solar-like") oscillations.Comment: 28 pages, 12 figures, 2 tables; Proceedings of the AAS topical conference "Giants of Eclipse" (AASTCS-3), July 28 - August 2 2013, Monterey, C