63 research outputs found
Classification, substrate specificity and structural features of D-2-hydroxyacid dehydrogenases: 2HADH knowledgebase
BACKGROUND: The family of D-isomer specific 2-hydroxyacid dehydrogenases (2HADHs) contains a wide range of oxidoreductases with various metabolic roles as well as biotechnological applications. Despite a vast amount of biochemical and structural data for various representatives of the family, the long and complex evolution and broad sequence diversity hinder functional annotations for uncharacterized members. RESULTS: We report an in-depth phylogenetic analysis, followed by mapping of available biochemical and structural data on the reconstructed phylogenetic tree. The analysis suggests that some subfamilies comprising enzymes with similar yet broad substrate specificity profiles diverged early in the evolution of 2HADHs. Based on the phylogenetic tree, we present a revised classification of the family that comprises 22 subfamilies, including 13 new subfamilies not studied biochemically. We summarize characteristics of the nine biochemically studied subfamilies by aggregating all available sequence, biochemical, and structural data, providing comprehensive descriptions of the active site, cofactor-binding residues, and potential roles of specific structural regions in substrate recognition. In addition, we concisely present our analysis as an online 2HADH enzymes knowledgebase. CONCLUSIONS: The knowledgebase enables navigation over the 2HADHs classification, search through collected data, and functional predictions of uncharacterized 2HADHs. Future characterization of the new subfamilies may result in discoveries of enzymes with novel metabolic roles and with properties beneficial for biotechnological applications
Use-Exposure Relationships of Pesticides for Aquatic Risk Assessment
Field-scale environmental models have been widely used in aquatic exposure assessments of pesticides. Those models usually require a large set of input parameters and separate simulations for each pesticide in evaluation. In this study, a simple use-exposure relationship is developed based on regression analysis of stochastic simulation results generated from the Pesticide Root-Zone Model (PRZM). The developed mathematical relationship estimates edge-of-field peak concentrations of pesticides from aerobic soil metabolism half-life (AERO), organic carbon-normalized soil sorption coefficient (KOC), and application rate (RATE). In a case study of California crop scenarios, the relationships explained 90â95% of the variances in the peak concentrations of dissolved pesticides as predicted by PRZM simulations for a 30-year period. KOC was identified as the governing parameter in determining the relative magnitudes of pesticide exposures in a given crop scenario. The results of model application also indicated that the effects of chemical fate processes such as partitioning and degradation on pesticide exposure were similar among crop scenarios, while the cross-scenario variations were mainly associated with the landscape characteristics, such as organic carbon contents and curve numbers. With a minimum set of input data, the use-exposure relationships proposed in this study could be used in screening procedures for potential water quality impacts from the off-site movement of pesticides
Emotions in business-to-business service relationships
Emotion in business-to-business service relationships regarding cargo services is explored. The service relationship is characterised by mutual trust and cooperation. Contact is mainly via telephone or e-mail with some face-to-face interactions and participants providing a complex, multi-skilled seamless service. Experience rather than training plays a vital role with long-term service relationships built up and maintained. Emotional sensitivity is acquired partly by experience and a repeat customer base but mainly through a genuine desire to help and get to know others. In contrast to the view of emotional labour bringing managerial control or adverse affects to service staff, the emotion engendered by this work is authentic expression bringing personal satisfaction
The effect of uncertain material properties on free vibrations of thin periodic plates
280 GHz Focal Plane Unit Design and Characterization for the SPIDER-2 Suborbital Polarimeter
We describe the construction and characterization of the 280 GHz bolometric
focal plane units (FPUs) to be deployed on the second flight of the
balloon-borne SPIDER instrument. These FPUs are vital to SPIDER's primary
science goal of detecting or placing an upper limit on the amplitude of the
primordial gravitational wave signature in the cosmic microwave background
(CMB) by constraining the B-mode contamination in the CMB from Galactic dust
emission. Each 280 GHz focal plane contains a 16 x 16 grid of corrugated
silicon feedhorns coupled to an array of aluminum-manganese transition-edge
sensor (TES) bolometers fabricated on 150 mm diameter substrates. In total, the
three 280 GHz FPUs contain 1,530 polarization sensitive bolometers (765 spatial
pixels) optimized for the low loading environment in flight and read out by
time-division SQUID multiplexing. In this paper we describe the mechanical,
thermal, and magnetic shielding architecture of the focal planes and present
cryogenic measurements which characterize yield and the uniformity of several
bolometer parameters. The assembled FPUs have high yields, with one array as
high as 95% including defects from wiring and readout. We demonstrate high
uniformity in device parameters, finding the median saturation power for each
TES array to be ~3 pW at 300 mK with a less than 6% variation across each array
at one standard deviation. These focal planes will be deployed alongside the 95
and 150 GHz telescopes in the SPIDER-2 instrument, slated to fly from McMurdo
Station in Antarctica in December 2018
Quantification of endogenous levels of IAA, IAAsp and IBA in micro-propagated shoots of hybrid chestnut pre-treated with IBA
Endogenous levels of indole-3-acetic acid (IAA),
indole-3-acetylaspartic acid (IAAsp) and indole-3-butyric
acid (IBA) were measured during the first 8 d of in vitro
rooting of rootstock from the chestnut âM3â hybrid by high
performance liquid chromatography (HPLC). Rooting was
induced either by dipping the basal ends of the shoots into a
4.92-mM IBA solution for 1 min or by sub-culturing the
shoots on solid rooting medium supplemented with 14.8-
ÎŒM IBA for 5 d. For root development, the induced shoots
were transferred to auxin-free solid medium. Auxins were
measured in the apical and basal parts of the shoots by
means of HPLC. Endogenous levels of IAA and IAAsp
were found to be greater in IBA-treated shoots than in
control shoots. In extracts of the basal parts of the shoots,
the concentration of free IAA showed a significant peak 2 d
after either root inductive method and a subsequent gradual
decrease for the remainder of the time course. The
concentration of IAAsp peaked at day 6 in extracts of the
basal parts of shoots induced with 14.8-ÎŒM IBA for 5 d,
whereas shoots induced by dipping showed an initial
increase until day 2 and then remained stable. In extracts
from basal shoot portions induced by dipping, IBA
concentration showed a transient peak at day 1 and a plateau between day 2 and 4, in contrast to the profile of
shoots induced on auxin-containing medium, which
showed a significant reduction between 4 and 6 d after
transferred to auxin-free medium. All quantified auxins
remained at a relatively low level, virtually constant, in
extracts from apical shoot portions, as well as in extracts
from control non-rooting shoots. In conclusion, the natural
auxin IAA is the signal responsible for root induction,
although it is driven by exogenous IBA independently of
the adding conditions
Impact of IL-28B polymorphisms on pegylated interferon plus ribavirin treatment response in children and adolescents infected with HCV genotypes 1 and 4
IL-28B polymorphisms are predictors of response to therapy in adults infected with hepatitis C. We do not know whether they are markers of response to therapy in children and adolescents. The aim of this study was to determine whether single-nucleotide polymorphisms (SNPs) in the IL-28B gene could influence the probability of response to therapy compared with other known baseline prognostic factors and correlate with clinical findings in pediatric patients infected with hepatitis C virus (HCV) genotypes 1 or 4. We determined three SNPs of IL-28B (rs12979860, rs12980275, and rs8099917) in 82 patients with chronic HCV infection treated with pegylated interferon alpha and ribavirin (peg-IFNα/RBV). Treatment response and clinical data were analyzed. Overall, sustained virological response (SVR) was achieved by 45 % of patients infected with difficult-to-treat HCV genotypes 1 and 4. Except for IL-28B polymorphisms, there was no association of SVR with any other clinical data. IL-28B rs12979860 CC [odds ratio (OR), 6.81; p = 0.001] and rs8099917 TT (OR, 3.14; p = 0.013) genotypes were associated with higher SVR rates. IL-28B rs12980275 was not significantly associated with SVR ( p = 0.058). Only the distribution between CC and CT-TT genotypes of rs12979860 significantly differentiated patients achieving early virological response (EVR) (OR, 10.0; p = 0.011). Children with the rs12979860 CC genotype had significantly higher baseline viral load compared with CT-TT patients ( p = 0.010). In children and adolescents chronically infected with HCV genotypes 1 and 4, IL-28B rs12979860 and rs8099917 polymorphisms were the only predictors of response to peg-IFN/RBV
Occurrence of Cyanazine Compounds in Groundwater: Degradates More Prevalent Than the Parent Compound
Understanding Lecturers' Perceptions of Workplace Fear: An Interpretive Study in the Cypriot Higher Education Context
This chapter explores how Cypriot lecturers perceive and experience fear while being at work. Drawing on the lens of interpretive inquiry, data were collected through interviews with 19 lecturers. Analysis focused on experiences of workplace fear offering rich insights into characteristics of fear, eliciting events, and coping ways. Findings help to unveil the specific events that lead to fear in the Cypriot universities, and the ways lecturers manage their fearful experiences. The study contributes to the study of discrete emotions, by empirically examining fearâs own storyline through the workersâ own perspectives, within a specific context
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