3,642 research outputs found
Numerical Study of Collisional Effects on Spatial Ion-Wave Echoes
Collisional effects on the second-order spatial ion-wave echo are studied numerically. General agreement is obtained with the experimental results of Ikezi, Takahashi, and Nishikawa. A critical argument is raised against the validity of the small collision approximation
Systematic description and key to streptomyces isolants from Chile-Atacama Desert, Hawaii, and Oregon soils
Systematic description and key to Streptomycetes isolants from Chile-Atacama Desert, Hawaii, and Oregon soil
Systematic description and key to Streptomyces isolants from Chile, Mexico and Arizona desert soils Progress report
Streptomycetes isolants from Chile, Mexico, and Arizona desert soil
Estimation of the mean of a discrete parameter, covariance stationary, stochastic process in rotation sampling
Constrained optimization procedure for deriving linear estimator of population mean in rotation samplin
Determining physical properties of the cell cortex
Actin and myosin assemble into a thin layer of a highly dynamic network
underneath the membrane of eukaryotic cells. This network generates the forces
that drive cell and tissue-scale morphogenetic processes. The effective
material properties of this active network determine large-scale deformations
and other morphogenetic events. For example,the characteristic time of stress
relaxation (the Maxwell time)in the actomyosin sets the time scale of
large-scale deformation of the cortex. Similarly, the characteristic length of
stress propagation (the hydrodynamic length) sets the length scale of slow
deformations, and a large hydrodynamic length is a prerequisite for long-ranged
cortical flows. Here we introduce a method to determine physical parameters of
the actomyosin cortical layer (in vivo). For this we investigate the relaxation
dynamics of the cortex in response to laser ablation in the one-cell-stage {\it
C. elegans} embryo and in the gastrulating zebrafish embryo. These responses
can be interpreted using a coarse grained physical description of the cortex in
terms of a two dimensional thin film of an active viscoelastic gel. To
determine the Maxwell time, the hydrodynamic length and the ratio of active
stress and per-area friction, we evaluated the response to laser ablation in
two different ways: by quantifying flow and density fields as a function of
space and time, and by determining the time evolution of the shape of the
ablated region. Importantly, both methods provide best fit physical parameters
that are in close agreement with each other and that are similar to previous
estimates in the two systems. We provide an accurate and robust means for
measuring physical parameters of the actomyosin cortical layer.It can be useful
for investigations of actomyosin mechanics at the cellular-scale, but also for
providing insights in the active mechanics processes that govern tissue-scale
morphogenesis.Comment: 17 pages, 4 figure
Systematic description and key to Streptomyces isolants from Chile, Arizona, and Antarctica desert soils
Identification of streptomycete isolants from Chile, Arizona, and Antarctic desert soil
Wang-Landau molecular dynamics technique to search for low-energy conformational space of proteins
Multicanonical molecular dynamics (MD) is a powerful technique for sampling
conformations on rugged potential surfaces such as protein. However, it is
notoriously difficult to estimate the multicanonical temperature effectively.
Wang and Landau developed a convenient method for estimating the density of
states based on a multicanonical Monte Carlo method. In their method, the
density of states is calculated autonomously during a simulation. In this paper
we develop a set of techniques to effectively apply the Wang-Landau method to
MD simulations. In the multicanonical MD, the estimation of the derivative of
the density of states is critical. In order to estimate it accurately, we
devise two original improvements. First, the correction for the density of
states is made smooth by using the Gaussian distribution obtained by a short
canonical simulation. Second, an approximation is applied to the derivative,
which is based on the Gaussian distribution and the multiple weighted histogram
technique. A test of this method was performed with small polypeptides,
Met-enkephalin and Trp-cage, and it is demonstrated that Wang-Landau MD is
consistent with replica exchange MD but can sample much larger conformational
space.Comment: 8 pages, 7 figures, accepted for publication in Physical Review
LAP3, a novel plant protein required for pollen development, is essential for proper exine formation
We isolated lap3-1 and lap3-2 mutants in ascreen for pollen that displays abnormal stigma binding.Unlike wild-type pollen, lap3-1 and lap3-2 pollen exine isthinner, weaker, and is missing some connections betweentheir roof-like tectum structures. We describe the mappingand identification of LAP3 as a novel gene that contains arepetitive motif found in b-propeller enzymes. Insertionmutations in LAP3 lead to male sterility. To investigatepossible roles for LAP3 in pollen development, we assayedthe metabolite profile of anther tissues containing developingpollen grains and found that the lap3-2 defect leadsto a broad range of metabolic changes. The largest changeswere seen in levels of a straight-chain hydrocarbon nonacosaneand in naringenin chalcone, an obligate compoundin the flavonoid biosynthesis pathway
Ion dynamics and acceleration in relativistic shocks
Ab-initio numerical study of collisionless shocks in electron-ion
unmagnetized plasmas is performed with fully relativistic particle in cell
simulations. The main properties of the shock are shown, focusing on the
implications for particle acceleration. Results from previous works with a
distinct numerical framework are recovered, including the shock structure and
the overall acceleration features. Particle tracking is then used to analyze in
detail the particle dynamics and the acceleration process. We observe an energy
growth in time that can be reproduced by a Fermi-like mechanism with a reduced
number of scatterings, in which the time between collisions increases as the
particle gains energy, and the average acceleration efficiency is not ideal.
The in depth analysis of the underlying physics is relevant to understand the
generation of high energy cosmic rays, the impact on the astrophysical shock
dynamics, and the consequent emission of radiation.Comment: 5 pages, 3 figure
Energy exchange during stimulated Raman scattering of a relativistic laser in a plasma
Energy exchange between pump and daughter waves during the stimulated Raman scattering process in a plasma is investigated, including the effect of a damping coefficient of electron-ion collision at different initial three-wave phases. To obey the energy and momentum conservations, the resonance conditions are satisfied at an optimal initial phase difference between the interacting waves. The amplitudes of the interacting waves exhibit behaviors such as a parametric oscillator. The variations in initial three-wave phase difference generate a phase mismatch, which enhances the rate of the amplitude variations of the interacting waves. The relativistic mass effect modifies the dispersion relations of the interacting waves, and consequently the energy exchange during the stimulated Raman scattering is affected. The collisional damping in the plasma is shown to have an important effect on the evolution of the interacting waves.open91
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