Modelling Kinetics of Plant Canopy Architecture - Concepts and Applications

Most crop models simulate the crop canopy as an homogeneous medium. This approach enables modelling of mass and energy transfer through relatively simple equations, and is useful for understanding crop production. However, schematisation of an homogeneous medium cannot address the heterogeneous nature of canopies and interactions between plants or plant organs, and errors in calculation of light interception may occur. Moreover, conventional crop models do not describe plant organs before they are visible externally e.g young leaves of grasses. The conditions during early growth of individual organs are important determinants of final organ size, causing difficulties in incorporating effects of environmental stresses in such models. Limited accuracy in describing temporal source-sink relationships also contributes to difficulty in modelling dry matter distribution and paramaterisation of harvest indices. Functional-architectural modelling overcomes these limitations by (i) representing crops as populations of individual plants specified in three dimensions and (ii) by modelling whole plant growth and development from the behaviour of individual organs, based on sound models of organs such as leaves and internodes. Since individual plants consist of numerous organs, generic models of organ growth applicable across species are desirable. Consequently, we are studying the development of individual organs, and parameterising it in terms of environmental variables and plant characteristics. Models incorporating plant architecture are currently applied in education, using dynamic visual representation for teaching growth and development. In research, the 3D representation of plants addresses issues presented above and new applications including modelling of pesticide distribution, fungal spore dispersal through splashing and plant to plant heterogeneity

Optical extinction due to intrinsic structural variations of photonic crystals

Unavoidable variations in size and position of the building blocks of photonic crystals cause light scattering and extinction of coherent beams. We present a new model for both 2 and 3-dimensional photonic crystals that relates the extinction length to the magnitude of the variations. The predicted lengths agree well with our new experiments on high-quality opals and inverse opals, and with literature data analyzed by us. As a result, control over photons is limited to distances up to 50 lattice parameters ($\sim 15 \mu$m) in state-of-the-art structures, thereby impeding large-scale applications such as integrated circuits. Conversely, scattering in photonic crystals may lead to novel physics such as Anderson localization and non-classical diffusion.Comment: 10 pages, 3 figures. Changes include: added Lagendijk as author; simplified and generalized the tex

Genetic alterations on chromosome 16 and 17 are important features of ductal carcinoma in situ of the breast and are associated with histologic type

We analysed the involvement of known and putative tumour suppressor- and oncogene loci in ductal carcinoma in situ (DCIS) by microsatellite analysis (LOH), Southern blotting and comparative genomic hybridization (CGH). A total of 78 pure DCIS cases, classified histologically as well, intermediately and poorly differentiated, were examined for LOH with 76 markers dispersed along all chromosome arms. LOH on chromosome 17 was more frequent in poorly differentiated DCIS (70%) compared to well-differentiated DCIS (17%), whereas loss on chromosome 16 was associated with well- and intermediately differentiated DCIS (66%). For a subset we have done Southern blot- and CGH analysis. C-erbB2/neu was amplified in 30% of poorly differentiated DCIS. No amplification was found of c-myc, mdm2, bek, flg and the epidermal growth factor (EGF)-receptor. By CGH, most frequent alterations in poorly differentiated DCIS were gains on 8q and 17q22–24 and deletion on 17p, whereas in well-differentiated DCIS amplification on chromosome 1q and deletion on 16q were found. In conclusion, our data indicates that inactivation of a yet unknown tumour suppressor gene on chromosome 16q is implicated in the development of most well and intermediately differentiated DCIS whereas amplification and inactivation of various genes on chromosome 17 are implicated in the development of poorly differentiated DCIS. Furthermore these data show that there is a genetic basis for the classification of DCIS in a well and poorly differentiated type and support the evidence of different genetic routes to develop a specific type of carcinoma in situ of the breast. © 1999 Cancer Research Campaig

<i>Photobacterium sanctipauli</i> sp. nov. isolated from bleached <i>Madracis decactis</i> (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil

Five novel strains of Photobacterium (A-394T, A-373, A-379, A-397 and A-398) were isolated from bleached coral Madracis decactis (scleractinian) in the remote St Peter & St Archipelago (SPSPA), Mid-Atlantic Ridge, Brazil. Healthy M. decactis specimens were also surveyed, but no strains were related to them. The novel isolates formed a distinct lineage based on the 16S rRNA, recA, and rpoA gene sequences analysis. Their closest phylogenetic neighbours were Photobacterium rosenbergii, P. gaetbulicola, and P. lutimaris, sharing 96.6 to 95.8% 16S rRNA gene sequence similarity. The novel species can be differentiated from the closest neighbours by several phenotypic and chemotaxonomic markers. It grows at pH 11, produces tryptophane deaminase, presents the fatty acid C18:0, but lacks C16:0 iso. The whole cell protein profile, based in MALDI-TOF MS, distinguished the strains of the novel species among each other and from the closest neighbors. In addition, we are releasing the whole genome sequence of the type strain. The name Photobacterium sanctipauli sp. nov. is proposed for this taxon. The G + C content of the type strain A-394T (= LMG27910T = CAIM1892T) is 48.2 mol%

Comparison of 32-site exact diagonalization results and ARPES spectral functions for the AFM insulator Sr2CuO2Cl2Sr_2CuO_2Cl_2

We explore the success of various versions of the one-band t-J model in explaining the full spectral functions found in angle-resolved photoemission spectra for the prototypical, quasi two-dimensional, tetragonal, antiferromagnetic insulator $Sr_2CuO_2Cl_2$. After presenting arguments justifying our extraction of $A(k,\omega)$ from the experimental data, we rely on exact-diagonalization results from studies of a square 32-site lattice, the largest cluster for which such information is presently available, to perform this comparison. Our work leads us to believe that (i) a one-band model that includes hopping out to third-nearest neighbours, as well three-site, spin-dependent hopping, can indeed explain not only the dispersion relation, but also the quasiparticle lifetimes -- only in the neighbourhood of $k = (\pi/2,0)$ do we find disagreement; (ii) an energy-dependent broadening function, $\Gamma (E) = \Gamma_0 + A E$, is important in accounting for the incoherent contributions to the spectral functions.Comment: 8 pages, Revtex

Christopher Lasch's the culture of narcissism the failure of a critique of psychological politics

Christopher Lasch's bestseller The Culture of Narcissism had, beyond doubt, a significant impact-it was even read in the White House. Today it is not only still frequently taught and referenced, there are also still empirical studies conducted which try to verify Lasch's assertion of the preponderance of the narcissistic personality. This paper re-reads the book as a critique of psychologization processes, and this allows us to discern, besides the flaws in Lasch's approach, a fundamental insight which goes largely unnoticed by both Lasch's opponents and his proponents. Following this, the article will situate subjectivity within the matrix of psychology, science, psychoanalysis, and politics. In this way a critique of contemporary forms of psychologization-psychologization under globalization, as it were-is made possible

Risk, precaution and science: towards a more constructive policy debate. Talking point on the precautionary principle

Few issues in contemporary risk policy are as momentous or contentious as the precautionary principle. Since it first emerged in German environmental policy, it has been championed by environmentalists and consumer protection groups, and resisted by the industries they oppose (Raffensperger & Tickner, 1999). Various versions of the principle now proliferate across different national and international jurisdictions and policy areas (Fisher, 2002). From a guiding theme in European Commission (EC) environmental policy, it has become a general principle of EC law (CEC, 2000; Vos & Wendler, 2006). Its influence has extended from the regulation of environmental, technological and health risks to the wider governance of science, innovation and trade (O'Riordan & Cameron, 1994)

Pesticide Use in South Africa: One of the Largest Importers of Pesticides in Africa

South Africa is a diverse country, with a diverse environment that is home to more than 49 000 000 people. Pesticide usage is very often necessary to maintain both agricultural productivity as well as human health. The climatic conditions range from semi-tropic to semi-arid regions. Although the majority of the country has summer rainfall, the south western coastal region is predominantly a winter rainfall area. These variations in climate allows for a wide variety of crops, from tropical fruit to maize and tree plantations. Each individual crop is susceptible to a unique host of pests that in-turn require a unique mixture of pesticides to ensure the best resulting turnover. Currently, South Africa has more than 500 registered pesticides (Pesticide Action Network (PAN), 2010) and is one of the four largest importers of pesticides in sub-Saharan Africa (Osbanjo et al., 2002). In 2006 the import of insecticides, fungicides and herbicides that were packaged for retail totalled $ 170 056 000 the main import partners being Australia, China, Germany and the United States of America (USA) (International Trade Centre, 2011). These pesticides are used in almost every facet of our everyday lives; ensuring the quantity and quality of food we eat to managing the number of rodents and insects in our homes. Although it is evident that there is a vast amount of pesticides present in the South African environment, there is very limited data on the production of pesticides. The last published data indicates that in 2002 around 10 000 kℓ of liquid insecticides was produced exclusively for crop protection of which 43% consisted of organophosphates. During the same year 2 800-tonnes of solid insecticides were produced (Statistics South Africa, 2003). Although the usefulness of pesticides cannot be denied, the negative environmental and human health effects cannot be ignored. In South Africa, a number of environmental and anthropogenic factors have to be considered before the impact of large-scale pesticide use can be assessed. South Africa is a water poor country, with water resources being utilised to their maximum capacity. As discussed by Dabrowski et al. (2009), the trade-off between the economic benefits of exporting agricultural products has to be measured against the loss of water, not only through crop irrigation but also through water quality degradation. The article highlighted this aspect through the calculation of virtual water volumes. These calculated volumes indicated that to ensure sufficient dilution of all agrochemicals, to an acceptable water quality level (used in a typical farming situation applying current-use pesticides), was greater than the amount of water needed for irrigation. The seriousness of these scenarios is highlighted in literature where a diverse array of agricultural chemicals has been measured during run-off events, by once-off sampling and by water monitoring during the growing seasons. Detectable levels of atrazine, terbuthylazine, simazine, acetochlor (Du Preez et al., 2005), DDT and its metabolites, endosulfan, hexachlorocyclohexane (HCH), heptachlor, aldrin, dieldrin, endrin, chlordane (Fatoki et al., 2003), azinophos-methyl, chloropyriphos (Schultz et al., 2001; Dabrowski et al., 2002) prothiofos (Schultz, 2001), malathion, zendoxsulfan (Thiere &amp;  Schultz, 2004), cypermethrin and fenvalerate (Bollmohr et al., 2007), to name a few, have all been measured in South African waters. Pesticides in the aquatic environment have the potential to affect all end-users, including both humans and wildlife. South Africa has the distinction of being one of the countries with the most species richness in the world. To date more than 900 bird species as well as over 200 mammals, call South Africa home. Of these mammals, seven species are endangered and 30 are vulnerable according to the 2004 IUCN red data list (IUCN, 2010). These endangered species include bats, moles, shrews and mice that are often insectivorous, thus increasing their risk of unintentional exposure to pesticides. Within avian populations, 11 species are listed as critically endangered and 43 species as vulnerable. The sensitivity of avian species to pollutants has been widely reported. With this unique diversity of species, South Africans have a responsibility towards maintaining the viability of ecosystems and natural habitats to ensure the continued existence of these creatures. This objective is not only morally relevant but also economically relevant especially in a country where tourism creates over 400 000 jobs and contributes approximately 8% to the GDP. Few studies have reported the levels of insecticides in wildlife species. However, pesticides have been detected in wild bird species (Van Wyk et al., 2001; Bouwman et al., 2008), as well as in indigenous fish species (Barnhoorn et al., 2009), indicating pesticide contamination within various habitats. This is of particular concern due to the health risks associated with many pesticides