Integrative Approach to Assess Benthic Ecosystem Functioning on the Southwest Brazilian Continental Shelf

Continental shelf is a highly dynamic system controlled by water mass interactions, biogeochemical processes, and biological production of organic matter. Climatic and hydrological processes originate large variability in many scales of time and space that are responsible for its typical unsteady status, mainly at shallower depths. The southeastern Brazilian continental shelf is an important economic area that houses the commercial Port of Santos, the Petrobras oil terminal in São Sebastião, and fishery activities. This concise chapter explores the relationships of the benthic community structure facing a complex physical environment allied to human influences. It is built on previous studies developed in the southeast Brazilian continental shelf from the past 25 years. The shelf benthic system is governed by seasonal pulses of primary production promoted by the South Atlantic Central Water bottom intrusion and coastal upwelling allied to the passage of winter cold fronts. Self-structuring benthic community is achieved by the mobility of the organisms, feeding activity, and biogenic transformation of the habitat due to bioturbation

Experimental evaluation on the applicability of necrobiome analysis in forensic veterinary science

Despite the wide usage of animals as models in forensic studies, the investigations of fundamental legal questions involving domesticated and nondomesticated animals were always given marginal attention compared to "human forensic," and only recently the interest in the discipline is increasing. Our research focuses on the effect of the fur coat on the activity and development of microbial decomposers. In order to test this variable never assessed before, rabbit carcasses were used and results show that: (i) distinct and significant temporal changes in terms of metabolic activity and taxa distribution can be tracked over the decomposition process; (ii) the richness and the diversity of the bacterial communities does not significantly vary over time, but it does not mean that the species Operational Taxonomic Units (OTUs) do not change; (iii) the presence/absence of the fur on the carcasses does not significantly affect either the bacterial communities' functional activity or the diversity intra- and intercommunity, neither at phylum nor at family resolution; (iv) the functional activity and the ecological diversity of the bacterial communities are significantly affected by the body region, while the relative abundance is not. Obtained data confirm previous observations and provide new insight in the Forensic Veterinary field in terms of equally using them in order to derive a statistical model for the PMI estimation. As a future perspective, a contribution to the Forensic Entomology approach will be given in legal investigations when domestic or wild animals are involved, regardless of the presence of a hair layer

Asociaciones de foraminíferos en la bahía de Ubatuba, sureste de la costa brasileña

Live benthic foraminifera assemblages were studied in 40 surface sediment samples collected in the Ubatuba Bay (northern coast of São Paulo State) in order to investigate the relationship between the geological, physicochemical parameters and the ecological data. The area has significant contributions of terrestrial inputs from four rivers that flow into the bay. Biological data were analyzed with multivariate techniques of cluster analysis and a Principal Component Analysis (PCA) was carried out for abiotic factors. The Suborder Rotaliina was dominant in the whole studied area. The result of the cluster analysis allowed us to recognize three groups of stations corresponding to three foraminifera assemblages and different environment conditions. The PCA revealed approximately the same three groups obtained with the cluster analysis. A slight increase in diversity in the outer bay was measured. The inner environment is dominated by A. tepida, evidencing local instabilities. Infaunal species are distributed in the middle region associated with mud and a high content of organic matter, while the most external region has similar percentages of epifaunal and infaunal, which indicates the higher energy condition in this portion of the bay. We also quantified the abnormal specimens that were mainly present in the inner bay, especially represented by A. tepida specimens.Fueron estudiadas las asociaciones de foraminíferos bentónicos vivos en 40 muestras de sedimento superficial colectadas en la Bahía de Ubatuba (costa noreste de São Paulo) con la intención de investigar la relación entre los parámetros geológicos, físico-químicos y los datos ecológicos. El área posee una importante contribución de origen terrestre a través de cuatro ríos que desembocan en la bahía. Los datos biológicos fueron analizados con técnicas multivariadas de análisis de agrupamiento y un Análisis de Componentes Principales (ACP) fue aplicado a los datos abióticos. El Suborden Rotaliina fue dominante en el área de estudio. El resultado del análisis de agrupamiento permitió reconocer tres grupos de estaciones que corresponden a tres asociaciones de foraminíferos representando las diferentes condiciones del ambiente. El ACP reveló aproximadamente los mismos tres grupos obtenidos con el análisis de agrupamiento. Fue medido un leve incremento de la diversidad hacia el exterior de la bahía. El ambiente más interno es dominado por A. tepida evidenciando la inestabilidad local. La porción media de la ensenada estuvo dominada por especies infaunales asociadas a las altas concentraciones de fango y materia orgánica, mientras que la región más externa presenta porcentajes similares de epifauna e infauna, indicando las condiciones de mayor energía prevalecientes en este sector. También fueron cuantificados los especimenes anormales los cuales estuvieron principalmente presentes en la parte más interna de la bahía representados especialmente por la especie A. tepida.

Crime scene and body alterations caused by arthropods: implications in death investigation

The activity of arthropods on corpses has been largely investigated, since they can produce information to reconstruct the peri-mortem events. However, the feeding/movement activity of insects around the crime scene, among the clothes and on the body, can also cause some alterations that can lead to wrong reconstruction and misinterpretations. This article summarises all the post-mortem arthropods artefacts related to the scene (i.e. fly artefacts and floor stripes) and the body (i.e. skin and other soft tissue alterations, bone alterations and hair alterations) that can mislead the forensic pathologist, discussing macroscopic and microscopic findings derived from forensic casework and from experimental laboratory studies, in order to provide a useful instrument to avoid misinterpretations and evaluation errors. Finally, some procedural notes for the documentation and the interpretation of findings are proposed

Structuring Factors Of The Cumacean Communities Of The Continental Shelf Of Southeastern Brazil

Cumaceans are benthic crustaceans distributed worldwide, from intertidal to abyssal plains. They live in sandy and muddy bottoms and can sometimes be found in the water column. Despite their ecological importance as food items for fishes and other organisms and their usefulness as environmental indicators, very few studies have investigated their biodiversity and distribution in Brazil. The present paper reports an ecological study of the cumacean species found on the continental shelf off Santos, southeastern Brazil. It investigates the composition and spatio-temporal structure of the communities, the main environmental factors responsible for the maintenance of that structure and analyzes the effects of the seasonal oceanographic changes on the community descriptors. A grid of 21 stations located between 10 and 100 m depth was created in winter 2005 and summer 2006 and the sediment samples collected with a 0.1 m2 box corer. Twenty four species were obtained, five of them being the most numerous: Diastylis sexpectinata, D. sympterygiae, Eudorella sp., Oxyurostylis salinoi and Anchistylis notus, the latter highly dominant in summer. Diastylis sympterygiae was characteristic of the shallowest and least saline stations (< 16 m depth; S = 33.07 - 34.2) in both seasons. Of the total of 919 individuals, nearly 70% occurred in summer. The area was divided into four depth bands and no significant temporal difference was found as regards the density distribution of cumaceans in those bands as between the samples of the two campaigns. There were, however, spatial differences within bands in the summer campaign: the higher values of density, diversity and richness were close to the 50 m isobath in both campaigns, a fact that could well be attributed to the ongoing effect of the South Atlantic Central Water in this area. The results showed also that depth and the sediment particle size were the main structural factors determining the composition and distribution of the cumacean species.Cumáceos são crustáceos peracáridos cosmopolitas que se distribuem desde a zona entre marés até os fundos abissais. Habitam fundos arenosos e lamosos e eventualmente são encontrados no ambiente pelagial. Apesar de sua importância na dieta de diversos organismos, e de serem considerados bons indicadores ambientais, poucos estudos ecológicos foram realizados com o grupo no Brasil, não havendo uma avaliação do papel que desempenham na estruturação e funcionamento do ecossistema bêntico. O presente trabalho teve como objetivo descrever a composição e a distribuição espaço-temporal das espécies de Cumacea, investigar a existência de comunidades e de sua estrutura, identificar os principais fatores responsáveis pelos agrupamentos encontrados e avaliar o efeito das mudanças sazonais da estrutura oceanográfica sobre os descritores utilizados. Para tanto duas campanhas foram realizadas, no inverno de 2005 e no verão de 2006, em uma grade de 21 estações situadas na plataforma continental sudeste ao largo de Santos, dispostas em quatro faixas de profundidade (entre 10 e 100 m) e amostradas por meio de box corer com 0.1 m2 de área amostral. Do total de 24 espécies encontradas, cinco foram as mais abundantes: Diastylis sexpectinata, D. sympterygiae, Eudorella sp., Oxyurostylis salinoi e Anchistylis notus, esta última altamente dominante no verão. Diastylis sympterygiae foi característica das estações rasas (< 16 m) e com salinidades baixas (33.07 - 34.2), tanto no inverno quanto no verão. Do total de 919 indivíduos obtidos pouco mais de 70% ocorreu no verão. A área foi dividida em quatro faixas de profundidade e, considerando a distribuição da densidade de cumáceos nessas faixas, não foi encontrada diferença temporal significativa entre as amostras das duas campanhas. Entretanto, houve diferença espacial entre as faixas na campanha de verão, sendo os valores mais elevados de densidade, diversidade e riqueza situados próximo à isóbata de 50 m em ambas as campanhas, podendo ser atribuídos ao efeito contínuo da Água Central do Atlântico Sul sobre essa área. Os resultados mostraram ainda que a profundidade e as características granulométricas do sedimento foram os principais fatores estruturadores das comunidades de Cumacea e determinantes da composição e distribuição das espécies na área

Graphene on metals: a Van der Waals density functional study

We use density functional theory (DFT) with a recently developed van der Waals density functional (vdW-DF) to study the adsorption of graphene on Al, Cu, Ag, Au, Pt, Pd, Co and Ni(111) surfaces. In constrast to the local density approximation (LDA) which predicts relatively strong binding for Ni,Co and Pd, the vdW-DF predicts weak binding for all metals and metal-graphene distances in the range 3.40-3.72 \AA. At these distances the graphene bandstructure as calculated with DFT and the many-body G$_0$W$_0$ method is basically unaffected by the substrate, in particular there is no opening of a band gap at the $K$-point.Comment: 4 pages, 3 figure

Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?

Species identification is a crucial step in forensic entomology. In several cases the calculation of the larval age allows the estimation of the minimum Post-Mortem Interval (mPMI). A correct identification of the species is the first step for a correct mPMI estimation. To overcome the difficulties due to the morphological identification especially of the immature stages, a molecular approach can be applied. However, difficulties in separation of closely related species are still an unsolved problem. Sequences of 4 different genes (COI, ND5, EF-1\u3b1, PER) of 13 different fly species collected during forensic experiments (Calliphora vicina, Calliphora vomitoria, Lucilia sericata, Lucilia illustris, Lucilia caesar, Chrysomya albiceps, Phormia regina, Cynomya mortuorum, Sarcophaga sp., Hydrotaea sp., Fannia scalaris, Piophila sp., Megaselia scalaris) were evaluated for their capability to identify correctly the species. Three concatenated sequences were obtained combining the four genes in order to verify if longer sequences increase the probability of a correct identification. The obtained results showed that this rule does not work for the species L. caesar and L. illustris. Future works on other DNA regions are suggested to solve this taxonomic issue

Structure and dynamics of the macrobenthic communities of Ubatuba Bay, southeastern Brazilian Coast

A composição, distribuição, densidade, biomassa, diversidade e relações tróficas das comunidades macrobênticas da Enseada de Ubatuba, costa sudeste brasileira, foram estudadas sazonalmente, de agosto de 1995 a junho de 1996. As amostragens foram realizadas em 9 estações de coleta, situadas entre 4 e 13 m de profundidade, e obtidas em duplicata com pegador de fundo van Veen de 0,1 m² de área amostral. Duzentas e cinco espécies macrobênticas foram obtidas, a maioria apresentando baixa dominância e freqüência. Poliquetas e nemátodes dominaram, representando 89% da fauna total. As variações espaciais na estrutura das comunidades foram correlacionadas ao tipo de sedimento, ao passo que as variações temporais o foram com o aumento da perturbação causada pelas ondas e correntes sobre o substrato durante o período de chuvas. Poliquetas carnívoros e detritívoros foram dominantes, totalizando 81% das espécies. O diâmetro médio das partículas, conteúdo de areia fina, areia muito fina, silte e argila estiveram entre os principais fatores relacionados aos padrões de distribuição da fauna, densidade, diversidade e com a dominância dos grupos tróficos. Análises multivariadas mostraram que a área de estudo pode ser dividida em dois grupos de estações, caracterizados, respectivamente, pela presença de Magelona papillicornis e Mediomastus capensis.Species composition, distribution, density, biomass, diversity and trophic relationships of the macrobenthic communities in Ubatuba Bay, southeastern Brazilian coast, were investigated seasonally from August 1995 to June 1996. Sampling was carried out at 9 stations of between 4 and 13 m depth and taken in duplicate with a 0.1m² van Veen grab. Two hundred and five macrofaunal species were identified, presenting low dominance and frequency. Polychaetes and nematodes dominated, representing 89% of the whole fauna. Spatial variations in the structure of the communities were correlated to sediment type whereas seasonal variations were correlated to the increase in wave size and current disturbance over the substrate during the rainy period. Carnivore and surface deposit-feeder polychaetes were dominant, totalling 81% of the species. Mean grain size, fine sand, very fine sand, silt and clay contents were among the main factors related to the patterns of macrofaunal distribution, density and diversity and to the dominance of trophic groups. Multivariate analysis showed that the area may be divided into two groups of stations each of them characterized, respectively, by the presence of Magelona papillicornis and Mediomastus capensis

Benthic macrofauna structure in the northeast area of Todos os Santos Bay, Bahia State, Brazil: patterns of spatial and seasonal distribution

A estrutura da macrofauna bêntica das regiões entre marés e infralitoral raso na porção nordeste da Baia de Todos os Santos (BTS), nordeste do Brasil, foi investigada durante um período de dois anos. Sua relação com os parâmetros ambientais mensurados foi estudada através de análises estatísticas uni -e multivariadas, sendo os principais padrões de distribuição espacial e temporal relacionados principalmente ao tipo de sedimento e ao conteúdo de três indicadores da matéria orgânica sedimentar (Carbono, Nitrogênio e Fósforo). A macrofauna, composta majoritariamente por anelídeos poliqueta (cerca de 70% do total), apresentou baixa densidade, riqueza de espécies e diversidade, exceto nas estações amostradas nos bancos recifais. Estes se destacam como ambiente peculiar, formado por sedimentos grosseiros, pobres em matéria orgânica e ricos em carbonatos, apresentando fauna abundante e diversificada. A região entre marés e os locais rasos adjacentes à refinaria RLAM são formados por sedimentos compostos principalmente por areia fina e baixo conteúdo orgânico e constituem ambiente instável, com poucas espécies altamente dominantes, como Armandia polyophthalma e Laeonereis acuta. Em outras regiões da BTS, onde dominam os sedimentos pelíticos, densidade e diversidade foram muito baixas, especialmente nas proximidades da refinaria. Aqui, os indicadores biológicos apresentaram seus mais baixos valores, sendo as estações mais próximas (4 e 7) algumas vezes azóicas. A região adjacente de Caboto, inicialmente considerada como controle, apresentou baixa densidade, porém valores médios para diversidade, o que indica ser este ambiente relativamente menos perturbado. Foi possível identificar a existência de 5 grupos com padrões estruturais próprios (entremarés; bancos recifais; infralittoral pelitico; sedimentos mistos; Caboto), que parecem estar relacionados principalmente às características físicas e químicas do sedimento.Structure of intertidal and subtidal benthic macrofauna in the northeastern region of Todos os Santos Bay (TSB), northeast Brazil, was investigated during a period of two years. Relationships with environmental parameters were studied through uni-and multivariate statistical analyses, and the main distributional patterns shown to be especially related to sediment type and content of organic fractions (Carbon, Nitrogen, Phosphorus), on both temporal and spatial scales. Polychaete annelids accounted for more than 70% of the total fauna and showed low densities, species richness and diversity, except for the area situated on the reef banks. These banks constitute a peculiar environment in relation to the rest of the region by having coarse sediments poor in organic matter and rich in biodetritic carbonates besides an abundant and diverse fauna. The intertidal region and the shallower area nearer to the oil refinery RLAM, with sediments composed mainly of fine sand, seem to constitute an unstable system with few highly dominant species, such as Armandia polyophthalma and Laeonereis acuta. In the other regions of TSB, where muddy bottoms predominated, densities and diversity were low, especially in the stations near the refinery. Here the lowest values of the biological indicators occurred together with the highest organic compound content. In addition, the nearest sites (stations 4 and 7) were sometimes azoic. The adjacent Caboto, considered as a control area at first, presented low density but intermediate values of species diversity, which indicates a less disturbed environment in relation to the pelitic infralittoral in front of the refinery. The results of the ordination analyses evidenced five homogeneous groups of stations (intertidal; reef banks; pelitic infralittoral; mixed sediments; Caboto) with different specific patterns, a fact which seems to be mainly related to granulometry and chemical sediment characteristics

Preferências alimentares de insetos por espécies de Piperaceae, observadas na cidade de São Paulo, Brasil

Piperaceae species have been placed among the basal angiosperm and are adapted to a variety of habitats including moist forests, secondary vegetation and dry high lands. The major anatomical/morphology features are of small trees, vines, and shrubs for Piper species, while the epiphytic and succulent characteristics are predominant forms among Peperomia species. Their secondary chemistry can be mostly represented by amides, phenylpropanoids/lignoids, and chromenes in addition to a phletoria of biosynthetically mixed-origin secondary compounds. Although several amides and lignans are known as insecticides, several phytophagous insects, among which some considered pests of economic importance, have been observed feeding vigorously on Piperaceae species. Herein we describe the feeding preferences of fourteen phytophagous species of Coleoptera, Lepidoptera and Hemiptera over approximately fifty Piperaceae species observed in São Paulo, SP, Brazil, in a long-term basis.As espécies de Piperaceae têm sido posicionadas entre as angiospermas basais e são frequentemente encontradas em habitats diversificados que incluem matas ciliares, vegetação secundária e campos rupestres. As espécies de Piper possuem hábitos de plantas herbáceas, arboretos e trepadeiras enquanto que, no caso de Peperomia, é freqüente o hábito de epífitas e suculentas. As classes de metabólitos secundários que caracterizam espécies de Piperaceae são amidas, fenilpropanóides/lignóides e cromenos, além de diversos outros de origem biossintética mista de menor representatividade. Apesar de muitos desses possuírem atividades inseticidas, diversos insetos fitófagos, alguns considerados pragas de importância econômica, foram observados alimentando-se de espécies de Piperaceae. Neste trabalho são relatadas as preferências alimentares de quatorze espécies fitófagas de Coleoptera, Lepidoptera e Hemiptera sobre aproximadamente cinqüenta espécies de Piperaceae observadas em São Paulo, SP, Brasil, durante um período de quatro anos