Invasive Species in the Delta: Segmentation and Classification of Water Hyacinth and Primrose

Because of its great beauty, Eichhornia crassipes (Water Hyacinth), originally from South America, has been introduced to 4 continents. Furthermore, because of its genetic make-up, high versatility and resiliency, this plant has become a frightening invasive, affecting boating and shipping, farming, water quality and fishermen livelihood wherever it thrives. However, Water Hyacinth (WH) is only 1 of over 84 invasives in the California Delta, which is where we focused our study. We took photographs along the Delta in treated and non-treated areas, and used an ENVI segmentation tool to find the best parameters for discriminating Water Hyacinth and Primrose. Once those parameters were found, we created a set of rules that would convey the percent cover of each invasive and dead plant material inside every photograph. This would help to determine the effectiveness of 2,4-D herbicide treatment on the invasives. The rules we created where based on the average RGB band ratios, and minimum and maximum RGB values of Water Hyacinth, Primrose, detritus, and water. We found that the herbicidal treatment was indeed effective to reduce invasive coverage, and that overall there were more Primrose than Water Hyacinth. The best segmentation parameters we found still did not accurately separate the two plant species within a given photo graph, but performed well on photographs with only one species. This ultimately affected the percent coverage found, but we conclude that the percentages are still accurate. A literature review was also conducted by compiling information from previous research articles that were written in regards to Water Hyacinth, and implications were stated to influence future research. Furthermore, a map we created of Water Hyacinth in the U.S allowed us to conclude that this invasive will most likely spread to the Central U.S region if its growth is not impeded

Changes in the Carbon Cycle of Amazon Ecosystems During the 2010 Drought

Satellite remote sensing was combined with the NASA-CASA carbon cycle simulation model to evaluate the impact of the 2010 drought (July through September) throughout tropical South America. Results indicated that net primary production (NPP) in Amazon forest areas declined by an average of 7% in 2010 compared to 2008. This represented a loss of vegetation CO2 uptake and potential Amazon rainforest growth of nearly 0.5 Pg C in 2010. The largest overall decline in ecosystem carbon gains by land cover type was predicted for closed broadleaf forest areas of the Amazon River basin, including a large fraction of regularly flooded forest areas. Model results support the hypothesis that soil and dead wood carbon decomposition fluxes of CO2 to the atmosphere were elevated during the drought period of 2010 in periodically flooded forest areas, compared to forests outside the main river floodplains

Carbon fluxes in ecosystems of Yellowstone National Park predicted from remote sensing data and simulation modeling

<p>Abstract</p> <p>Background</p> <p>A simulation model based on remote sensing data for spatial vegetation properties has been used to estimate ecosystem carbon fluxes across Yellowstone National Park (YNP). The CASA (Carnegie Ames Stanford Approach) model was applied at a regional scale to estimate seasonal and annual carbon fluxes as net primary production (NPP) and soil respiration components. Predicted net ecosystem production (NEP) flux of CO₂is estimated from the model for carbon sinks and sources over multi-year periods that varied in climate and (wildfire) disturbance histories. Monthly Enhanced Vegetation Index (EVI) image coverages from the NASA Moderate Resolution Imaging Spectroradiometer (MODIS) instrument (from 2000 to 2006) were direct inputs to the model. New map products have been added to CASA from airborne remote sensing of coarse woody debris (CWD) in areas burned by wildfires over the past two decades.</p> <p>Results</p> <p>Model results indicated that relatively cooler and wetter summer growing seasons were the most favorable for annual plant production and net ecosystem carbon gains in representative landscapes of YNP. When summed across vegetation class areas, the predominance of evergreen forest and shrubland (sagebrush) cover was evident, with these two classes together accounting for 88% of the total annual NPP flux of 2.5 Tg C yr^-1(1 Tg = 10¹²g) for the entire Yellowstone study area from 2000-2006. Most vegetation classes were estimated as net ecosystem sinks of atmospheric CO₂on annual basis, making the entire study area a moderate net sink of about +0.13 Tg C yr^-1. This average sink value for forested lands nonetheless masks the contribution of areas burned during the 1988 wildfires, which were estimated as net sources of CO₂to the atmosphere, totaling to a NEP flux of -0.04 Tg C yr^-1for the entire burned area. Several areas burned in the 1988 wildfires were estimated to be among the lowest in overall yearly NPP, namely the Hellroaring Fire, Mink Fire, and Falls Fire areas.</p> <p>Conclusions</p> <p>Rates of recovery for burned forest areas to pre-1988 biomass levels were estimated from a unique combination of remote sensing and CASA model predictions. Ecosystem production and carbon fluxes in the Greater Yellowstone Ecosystem (GYE) result from complex interactions between climate, forest age structure, and disturbance-recovery patterns of the landscape.</p

Vegetation classification of Coffea on Hawaii Island using WorldView-2 satellite imagery

Coffee is an important crop in tropical regions of the world; about 125 million people depend on coffee agriculture for their livelihoods. Understanding the spatial extent of coffee fields is useful for management and control of coffee pests such as Hypothenemus hampei and other pests that use coffee fruit as a host for immature stages such as the Mediterranean fruit fly, for economic planning, and for following changes in coffee agroecosystems over time. We present two methods for detecting Coffea arabica fields using remote sensing and geospatial technologies on WorldView-2 high-resolution spectral data of the Kona region of Hawaii Island. The first method, a pixel-based method using a maximum likelihood algorithm, attained 72% producer accuracy and 69% user accuracy (68% overall accuracy) based on analysis of 104 ground truth testing polygons. The second method, an object-based image analysis (OBIA) method, considered both spectral and textural information and improved accuracy, resulting in 76% producer accuracy and 94% user accuracy (81% overall accuracy) for the same testing areas. We conclude that the OBIA method is useful for detecting coffee fields grown in the open and use it to estimate the distribution of about 1050 hectares under coffee agriculture in the Kona region in 2012

‘This Is What the Colour Green Smells Like!’: Urban Forest Bathing Improved Adolescent Nature Connection and Wellbeing

Background: Research suggests that an early connection with nature can benefit wellbeing into adulthood. However, there is less research assessing whether adolescents benefit from formal nature connection interventions such as forest bathing (slow mindful nature walks). This research aimed to assess whether an urban nature connection intervention (called ParkBathe) could improve adolescents’ nature connection and wellbeing. Method: In an experimental repeated measures design, 44 adolescents sampled opportunistically from Scouts groups, completed surveys and interviews before and after experiencing an urban nature connection intervention. Results: Paired-samples t-tests between baseline and post-intervention survey scores revealed statistically significant improvements in anxiety (13% reduction); rumination (44% reduction); scepticism (17% reduction); nature connection (25% increase); and social connection (12% increase). The largest effect size was found for nature connection. Interviews revealed that before the session, participants had a mixed understanding and expectations of the intervention. Conclusions: After the session, the participants expressed enjoying the social aspects of being part of a group and being present in the moment by noticing nature. They expressed the effects of this as immediately calming and relaxing. Urban forest bathing improved nature connection and wellbeing in adolescents and could be implemented and/or signposted by schools and youth charities

Net primary productivity of forest stands in New Hampshire estimated from Landsat and MODIS satellite data

© 2007 Potter et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution Licens

Is clarithromycin a potential treatment for cachexia in people with lung cancer?: a feasibility study

Clarithromycin may improve cachexia and survival in non-small cell lung cancer (NSCLC), but adequately controlled data are lacking. This study was undertaken primarily to inform the feasibility and scale of a phase III trial. Eligible consenting patients with stage IV NSCLC and cachexia were to be randomized to receive either clarithromycin 250 mg twice daily or placebo for eight weeks. Aspects of trial feasibility recorded included numbers eligible, approached and recruited, together with adherence and completion of treatment and assessments. Over 6 months, none of 125 patients identified fulfilled the entry criteria. The commonest reasons for ineligibility were the use of an excluded concurrent drug (45, 36%), brain metastases (22, 18%), poor performance status (21, 17%) and current chemotherapy (15, 12%). A phase III trial of clarithromycin using these entry criteria is not feasible in this setting. Other macrolides that have a lower risk of a drug–drug interaction may be more practical to pursue

Translocation of Inhaled Ultrafine Manganese Oxide Particles to the Central Nervous System

BACKGROUND: Studies in monkeys with intranasally instilled gold ultrafine particles (UFPs; < 100 nm) and in rats with inhaled carbon UFPs suggested that solid UFPs deposited in the nose travel along the olfactory nerve to the olfactory bulb. METHODS: To determine if olfactory translocation occurs for other solid metal UFPs and assess potential health effects, we exposed groups of rats to manganese (Mn) oxide UFPs (30 nm; ~ 500 μg/m(3)) with either both nostrils patent or the right nostril occluded. We analyzed Mn in lung, liver, olfactory bulb, and other brain regions, and we performed gene and protein analyses. RESULTS: After 12 days of exposure with both nostrils patent, Mn concentrations in the olfactory bulb increased 3.5-fold, whereas lung Mn concentrations doubled; there were also increases in striatum, frontal cortex, and cerebellum. Lung lavage analysis showed no indications of lung inflammation, whereas increases in olfactory bulb tumor necrosis factor-α mRNA (~ 8-fold) and protein (~ 30-fold) were found after 11 days of exposure and, to a lesser degree, in other brain regions with increased Mn levels. Macrophage inflammatory protein-2, glial fibrillary acidic protein, and neuronal cell adhesion molecule mRNA were also increased in olfactory bulb. With the right nostril occluded for a 2-day exposure, Mn accumulated only in the left olfactory bulb. Solubilization of the Mn oxide UFPs was < 1.5% per day. CONCLUSIONS: We conclude that the olfactory neuronal pathway is efficient for translocating inhaled Mn oxide as solid UFPs to the central nervous system and that this can result in inflammatory changes. We suggest that despite differences between human and rodent olfactory systems, this pathway is relevant in humans

Prior biosphere model impact on global terrestrial CO2 fluxes estimated from OCO-2 retrievals

This study assesses the impact of different state of the art global biospheric CO2 flux models, when applied as prior information, on inverse model &ldquo;top-down&rdquo; estimates of terrestrial CO2 fluxes obtained when assimilating Orbiting Carbon Observatory 2 (OCO-2) observations. This is done with a series of observing system simulation experiments (OSSEs) using synthetic CO2 column-average dry air mole fraction (XCO2) retrievals sampled at the OCO-2 satellite spatiotemporal frequency. The OSSEs utilized a 4-D variational (4D-Var) assimilation system with the GEOS-Chem global chemical transport model (CTM) to estimate CO2 net ecosystem exchange (NEE) fluxes using synthetic OCO-2 observations. The impact of biosphere models in inverse model estimates of NEE is quantified by conducting OSSEs using the NASA-CASA, CASA-GFED, SiB-4, and LPJ models as prior estimates and using NEE from the multi-model ensemble mean of the Multiscale Synthesis and Terrestrial Model Intercomparison Project as the &ldquo;truth&rdquo;. Results show that the assimilation of simulated XCO2 retrievals at OCO-2 observing modes over land results in posterior NEE estimates which generally reproduce &ldquo;true&rdquo; NEE globally and over terrestrial TransCom-3 regions that are well-sampled. However, we find larger spread among posterior NEE estimates, when using different prior NEE fluxes, in regions and seasons that have limited OCO-2 observational coverage and a large range in &ldquo;bottom-up&rdquo; NEE fluxes. Seasonally averaged posterior NEE estimates had standard deviations (SD) of &sim;10&thinsp;% to &sim;50&thinsp;% of the multi-model-mean NEE for different TransCom-3 land regions with significant NEE fluxes (regions/seasons with a NEE flux &ge;0.5&thinsp;PgC&thinsp;yr&minus;1). On a global average, the seasonally averaged residual impact of the prior model NEE assumption on the posterior NEE spread is &sim;10&thinsp;%&ndash;20&thinsp;% of the posterior NEE mean. Additional OCO-2 OSSE simulations demonstrate that posterior NEE estimates are also sensitive to the assumed prior NEE flux uncertainty statistics, with spread in posterior NEE estimates similar to those when using variable prior model NEE fluxes. In fact, the sensitivity of posterior NEE estimates to prior error statistics was larger than prior flux values in some regions/times in the tropics and Southern Hemisphere where sufficient OCO-2 data were available and large differences between the prior and truth were evident. Overall, even with the availability of spatiotemporally dense OCO-2 data, noticeable residual differences (up to &sim;20&thinsp;%&ndash;30&thinsp;% globally and 50&thinsp;% regionally) in posterior NEE flux estimates remain that were caused by the choice of prior model flux values and the specification of prior flux uncertainties.</p

Safety and Immunogenicity of MAGE-A3 Cancer Immunotherapeutic with or without Adjuvant Chemotherapy in Patients with Resected Stage IB to III MAGE-A3-Positive Non-Small-Cell Lung Cancer

Introduction: To assess the safety and immunogenicity of MAGE-A3 immunotherapeutic in patients with stage IB-III MAGE-A3-positive non-small-cell lung cancer (NSCLC) who were or were not undergoing standard cisplatin/vinorelbine chemotherapy. Methods: This open, prospective, multicenter, parallel-group phase I study (NCT00455572) enrolled patients with resected (cohorts 1-3) or unresectable (cohort 4) MAGE-A3-positive NSCLC. MAGE-A3 immunotherapeutic (300 g recombinant MAGE-A3 formulated with AS15) was administered (eight doses, 3 weeks apart) concurrent with (cohort 1), after (cohort 2), or without (cohort 3) standard-adjuvant chemotherapy, or after standard radiotherapy and/or chemotherapy (cohort 4). Results: Sixty-seven patients received greater than or equal to 1 dose of MAGE-A3 immunotherapeutic. Grade 3/4 adverse events (AEs) were reported for 16 out of 19 (84%), 2 out of 18 (11%), 5 out of 18 (28%), and 1 out of 12 (8%) patients in cohorts 1, 2, 3, and 4, respectively. Many grade 3/4 AEs in cohort 1 (e.g., neutropenia) were typical of chemotherapy. Six patients, including three in cohort 1, reported study treatment-related grade 3/4 AEs (injection-site reactions or musculoskeletal/back pain, which resolved within 5 days). One patient (in cohort 4) died, but this and the other serious adverse events were not study treatment related. MAGE-A3-specific antibody responses to immunotherapy were induced in all patients evaluated in all cohorts. MAGE-A3-specific CD4(+) T-cell responses to immunotherapy were detected in 4 out of 11 (36%), 4 out of 15 (27%), 2 out of 8 (25%), and 5 out of 6 (83%) evaluated patients in cohorts 1, 2, 3, and 4, respectively; and CD8(+) T-cell responses were only detected in four patients. Conclusion: In resected and unresectable NSCLC patients and irrespective of whether standard chemotherapy was concurrent or not, MAGE-A3 immunotherapeutic is well tolerated and induces MAGE-A3-specific immune responses. GlaxoSmithKline Biologicals SA sponsored the clinical trial and covered the costs associated with the development and publishing of the manuscript, including scientific writing assistance. adjuvant chemotherapy; immunotherapy; immunostimulant; MAGE-A3; non–small cell lung carcinoma; vaccin