Improved reference genome of Aedes aegypti informs arbovirus vector control

Female Aedes aegypti mosquitoes infect more than 400 million people each year with dangerous viral pathogens including dengue, yellow fever, Zika and chikungunya. Progress in understanding the biology of mosquitoes and developing the tools to fight them has been slowed by the lack of a high-quality genome assembly. Here we combine diverse technologies to produce the markedly improved, fully re-annotated AaegL5 genome assembly, and demonstrate how it accelerates mosquito science. We anchored physical and cytogenetic maps, doubled the number of known chemosensory ionotropic receptors that guide mosquitoes to human hosts and egg-laying sites, provided further insight into the size and composition of the sex-determining M locus, and revealed copy-number variation among glutathione S-transferase genes that are important for insecticide resistance. Using high-resolution quantitative trait locus and population genomic analyses, we mapped new candidates for dengue vector competence and insecticide resistance. AaegL5 will catalyse new biological insights and intervention strategies to fight this deadly disease vector

Stratigraphic and structural control on the distribution of gas hydrates and active gas seeps on the Posolsky Bank, Lake Baikal

The distribution and origin of shallow gas seeps in the vicinity of the Posolsky Bank in Lake Baikal were studied based on the integration of detailed seismic, multibeam, and hydro-acoustic water-column investigations. In all, 65 acoustic flares have been detected on the Posolsky Fault scarp near the crest of the bank and in a similar, nearby setting at water depths of -43 to -332 m. The seismic data reveal BSRs (bottom-simulating reflectors) occurring up to water depths of -300 m. Calculations involving hydrate stability, heat flow, and topographic modulation based on BSR occurrence and multibeam bathymetry enabled prediction of a methane-ethane gas mixture and heat-flow values that would account for gas hydrate stability in the lake sediments under prevailing ambient conditions. These predictions are supported by ground truth data. The findings suggest that seeps concentrated along the crest of the Posolsky Bank are fed mainly by gas coming from below the base of the gas hydrate stability zone, which would migrate updip via permeable stratigraphic pathways beneath the bank. Gas would ultimately be released into the water column where these pathways are cut off by faults

Adaptation Without Boundaries: Population Genomics in Marine Systems

From the surface, the world’s oceans appear vast and boundless. Ocean currents, which can transport marine organisms thousands of kilometers, coupled with species that spend some or all of their life in the pelagic zone, the open sea, highlight the potential for well-mixed, panmictic marine populations. Yet these ocean habitats do harbor boundaries. In this largely three-dimensional marine environment, gradients form boundaries. These gradients include temperature, salinity, and oxygen gradients. Ocean currents also form boundaries between neighboring water masses even as they can break through barriers by transporting organisms huge distances. With the advent of next-generation sequencing approaches, which allow us to easily generate a large number of genomic markers, we are in an unprecedented position to study the effects of these potential oceanic boundaries and can ask how often and when do locally adapted marine populations evolve. This knowledge will inform our understanding of how marine organisms respond to climate change and affect how we protect marine diversity. In this chapter I first discuss the major boundaries present in the marine environment and the implications they have for marine organisms. Next, I discuss the how genomic approaches are impacting our understanding of genetic connectivity, ocean fisheries, and local adaptation, including the potential for epigenetic adaptation. I conclude with considerations for marine conservation and management and future prospects