Identification of novel single nucleotide polymorphism (SNP) in DPB1 gene in ethnic population from West Bengal

HLA-DP antigens present peptides to CD4+ T cells and play an important role in autoimmune diseases and parasitic infections. We have sequenced HLA-DPB1 exon-2 from the ethnic populations in West Bengal, India and report a novel single nucleotide polymorphism (SNP) - rs111221466. The rs111221466 SNP induced silent mutation from CGA (Arg) to TGA (Stop Codon) and showed a frequency of 83.24%. In conventional sense, the frequency of novel SNP is very high. We have sequenced HLA-DPB1 exon-2 from a Bengali Population in West Bengal, India. HLA-DP antigens present peptides to CD4+ T cells and play an important role in autoimmune diseases and parasitic infections. Here, we report a novel single nucleotide polymorphism of HLA-DPB1 gene in the population. rs111221466 showed a frequency of 83.24, which is important to note, in view of common polymorphisms involved in disease susceptibility

Isolation and characterization of microsatellite markers in Garcinia gummi-gutta by next-generation sequencing and cross-species amplification

Garcinia gummi-gutta (L.) Roxb. (Clusiaceae) is an endemic, semidomesticated, fruit-yielding tree species distributed in the Western Ghats of India and Sri Lanka. Various bioactive phytochemicals, such as garcinol, benzophenones and xanthones are isolated from G. gummi-gutta and have shown antibacterial, antiviral and antioxidant activities. We sequenced the total genomic DNA using Illumina Hiseq 2000 platform and examined 241,141,804 bp high quality data, assembled into 773,889 contigs. In these contigs, 27,313 simple-sequence repeats (SSRs) were identified, among which mononucleotide repeats were predominant (44.98%) followed by dinucleotide and trinucleotide repeats. Primers were designed for 9964 microsatellites among which 32 randomly selected SSR primer pairs were standardized for amplification. Polymerase chain reaction (PCR) amplification of genomic DNA in 30 G. gummi-gutta genotypes revealed polymorphic information content (PIC) across all 32 loci ranging from 0.867 to 0.951, with a mean value of 0.917. The observed and expected heterozygosity ranged from 0.00 to 0.63 and 0.896 to 0.974, respectively. Alleles per locus ranged from 12 to 27. This is the first report on the development of genomic SSR markers in G. gummi-gutta using next-generation sequencing technology. The genomic SSR markers developed in this study will be useful in identification, mapping, diversity and breeding studies

Simulation Studies on Arrival Time Distributions of Cherenkov Photons in Extensive Air Showers

Atmospheric Cherenkov technique is an established methodology to study TeV energy gamma rays. Here we carry out systematic monte carlo simulation studies of the timing information of Cherenkov photons. Extensive studies have already been carried out in this regard. Most of these are carried out at higher energies with the aim of studying the elemental composition of cosmic rays. However not much attention is paid to the species dependent signatures at TeV energies. In this work, functional fits have been carried out to the spherical Cherenkov shower fronts and the radii of curvature have been found to be equal to the height of shower maximum irrespective of the species or the observation level. Functional fits have also been carried out to describe the pulse shapes at various core distances in terms of well known probability density distribution functions (PDF). Two types of PDF's have been tried viz. gamma function and lognormal function. The variation of the pulse shape parameters as a function of primary energy, observation height and incident angles have been studied. The possibility of deriving the pulse shape parameters like the rise & decay times, full width at half maximum from the easily measurable quantities like the mean and RMS variation of photon arrival times offers a very important new technique which can be easily applied in an observation.Comment: 34 pages, 14 figures, accepted for publication in Astroparticle Physic

Possible Discrimination between Gamma Rays and Hadrons using Cerenkov Photon Timing Measurements

Atmospheric \v{C}erenkov Technique is an established methodology to study $TeV$ energy gamma rays. However the challenging problem has always been the poor signal to noise ratio due to the presence of abundant cosmic rays. Several ingenious techniques have been employed to alleviate this problem, most of which are centred around the \v{C}erenkov image characteristics. However there are not many techniques available for improving the signal to noise ratio of the data from wavefront sampling observations. One such possible technique is to use the \v{C}erenkov photon arrival times and identify the species dependent characteristics in them. Here we carry out systematic monte carlo simulation studies of the timing information of \v{C}erenkov photons at the observation level. We have parameterized the shape of the \v{C}erenkov shower front as well as the pulse shapes in terms of experimentally measurable quantities. We demonstrate the sensitivity of the curvature of the shower front, pulse shape parameters as well as the photon arrival time jitter to primary species and show their efficiency in improving the signal to noise ratio. The effect of limiting the \v{C}erenkov telescope opening angle by using a circular focal point mask, onthe efficacy of the parameters has also been studied for each of the parameters. Radius of the shower front, pulse decay time and photon arrival time jitter have been found to be the most promising parameters which could be used to discriminate $\gamma -$ray events from the background. We also find that the efficiency of the first two parameters increases with zenith angle and efficiency of pulse decay time decreases with increasing altitude of observation.Comment: 30 pages, 5 postscript figures, uses elsart.sty; To appear in Astroparticle Physic

Ceramic Materials (Phosphors) for Display Applications

Phosphors the ceramic materials should able to work in tough environment surrounded and bombarded by high energy Vacuum Ultra Violet (VUV), UV or electron beam radiations in any discharge tube. The plasma display panel (PDP) is increasingly gaining attention over conventional cathode ray tube (CRT)-based TVs as a medium of large format (60+”) television (TV), particularly high definition TVs (HDTVs). Improvements have been made not only in size but also in other areas such as resolution, luminescence efficiency, brightness, contrast ratio, power consumption, and cost reduction. The formation of a phosphor host and doping process by solid solution is critical and is highly dependent on the reaction temperature and conditions. Since the purity of starting chemicals is very important to the synthesis of phosphors, the starting chemicals are typically 99.9%, 99.999% in purity. Required amounts of starting ingredients are mixed in the presence of an appropriate flux (if necessary) and fired at high temperatures (1200 °C) in air or in a controlled atmosphere (N2, C, CO, or N2 with 2-5% of H2). The present paper reports the synthesis and luminescence characteristics of different ceramic materials (phosphors) for display applications

Cerenkov Photon Density Fluctuations in Extensive Air Showers

The details of Cerenkov light produced by a gamma ray or a cosmic ray incident at the top of the atmosphere is best studied through systematic simulations of the extensive air showers. Recently such studies have become all the more important in view of the various techniques resulting from such studies, to distinguish gamma ray initiated showers from those generated by much more abundant hadronic component of cosmic rays. We have carried out here such systematic simulation studies using CORSIKA package in order to understand the Cerenkov photon density fluctuations for 5 different energies at various core distances both for gamma ray and proton primaries incident vertically at the top of the atmosphere. Such a systematic comparison of shower to shower density fluctuations for gamma ray and proton primaries is carried out for the first time here. It is found that the density fluctuations are significantly non-Poissonian. Such fluctuations are much more pronounced in the proton primaries than gamma ray primaries at all energies. The processes that contribute significantly to the observed fluctuations have been identified. It has been found that significant contribution to fluctuations comes from photons emitted after shower maximum. The electron number fluctuations and correlated emission of Cerenkov photons are mainly responsible for the observed fluctuations.Comment: 31 pages, latex, 16 figures in ps files, Accepted for publication in "Astroparticle Physics

Synthesis and Characterization of Sr2CeO4 Phosphor Doped with Erbium

The present paper reports the Photoluminescence (PL) of the Sr2CeO4 phosphor, singly doped with Erbium rare-earth ion with different concentrations (0.01, 0.1, 0.2, 0.5 and 1%).The phosphor samples were synthesized using the standard solid state reaction technique. The effect of Er dopant on the structural, morphological, and Photoluminescent properties of the samples are studied with X-ray diffraction (XRD), PL and SEM analysis. The PL emission of undoped Sr2CeO4 phosphor was observed at 470 nm with high intensity followed by the primary Er emissions with good intensity at 525, 530, 549, 557 and 565 nm

Physical property characterization of single step synthesized NdFeAsO0.80F0.20 bulk 50K superconductor

We report an easy single step synthesis route of title compound NdFeAsO0.80F0.20 superconductor having bulk superconductivity below 50 K. The title compound is synthesized via solid-state reaction route by encapsulation in an evacuated (10-3 Torr) quartz tube. Rietveld analysis of powder X-ray diffraction data shows that compound crystallized in tetragonal structure with space group P4/nmm. R(T)H measurements showed superconductivity with Tc (R=0) at 48 K and a very high upper critical field (Hc2) of up to 345 Tesla. Magnetic measurements exhibited bulk superconductivity in terms of diamagnetic onset below 50 K. The lower critical field (Hc1) is around 1000 Oe at 5 K. In normal state i.e., above 60 K, the compound exhibited purely paramagnetic behavior and thus ruling out the presence of any ordered FeOx impurity in the matrix. In specific heat measurements a jump is observed in the vicinity of superconducting transition (Tc) along with an upturn at below T=4 K due to the AFM ordering of Nd+3 ions in the system. The Thermo-electric power (TEP) is negative down to Tc, thus indicating dominant carriers to be of n-type in NdFeAsO0.80F0.20 superconductor. The granularity of the bulk superconducting NdFeAsO0.8F0.2 sample is investigated and the intra and inter grain contributions have been individuated by looking at various amplitude and frequencies of the applied AC drive magnetic field.Comment: 26pages text + Figures: comments/suggestions welcome ([email protected] & http://www.freewebs.com/vpsawana

Global surveillance of cancer survival 1995-2009: analysis of individual data for 25,676,887 patients from 279 population-based registries in 67 countries (CONCORD-2)

BACKGROUND: Worldwide data for cancer survival are scarce. We aimed to initiate worldwide surveillance of cancer survival by central analysis of population-based registry data, as a metric of the effectiveness of health systems, and to inform global policy on cancer control. METHODS: Individual tumour records were submitted by 279 population-based cancer registries in 67 countries for 25·7 million adults (age 15-99 years) and 75,000 children (age 0-14 years) diagnosed with cancer during 1995-2009 and followed up to Dec 31, 2009, or later. We looked at cancers of the stomach, colon, rectum, liver, lung, breast (women), cervix, ovary, and prostate in adults, and adult and childhood leukaemia. Standardised quality control procedures were applied; errors were corrected by the registry concerned. We estimated 5-year net survival, adjusted for background mortality in every country or region by age (single year), sex, and calendar year, and by race or ethnic origin in some countries. Estimates were age-standardised with the International Cancer Survival Standard weights. FINDINGS: 5-year survival from colon, rectal, and breast cancers has increased steadily in most developed countries. For patients diagnosed during 2005-09, survival for colon and rectal cancer reached 60% or more in 22 countries around the world; for breast cancer, 5-year survival rose to 85% or higher in 17 countries worldwide. Liver and lung cancer remain lethal in all nations: for both cancers, 5-year survival is below 20% everywhere in Europe, in the range 15-19% in North America, and as low as 7-9% in Mongolia and Thailand. Striking rises in 5-year survival from prostate cancer have occurred in many countries: survival rose by 10-20% between 1995-99 and 2005-09 in 22 countries in South America, Asia, and Europe, but survival still varies widely around the world, from less than 60% in Bulgaria and Thailand to 95% or more in Brazil, Puerto Rico, and the USA. For cervical cancer, national estimates of 5-year survival range from less than 50% to more than 70%; regional variations are much wider, and improvements between 1995-99 and 2005-09 have generally been slight. For women diagnosed with ovarian cancer in 2005-09, 5-year survival was 40% or higher only in Ecuador, the USA, and 17 countries in Asia and Europe. 5-year survival for stomach cancer in 2005-09 was high (54-58%) in Japan and South Korea, compared with less than 40% in other countries. By contrast, 5-year survival from adult leukaemia in Japan and South Korea (18-23%) is lower than in most other countries. 5-year survival from childhood acute lymphoblastic leukaemia is less than 60% in several countries, but as high as 90% in Canada and four European countries, which suggests major deficiencies in the management of a largely curable disease. INTERPRETATION: International comparison of survival trends reveals very wide differences that are likely to be attributable to differences in access to early diagnosis and optimum treatment. Continuous worldwide surveillance of cancer survival should become an indispensable source of information for cancer patients and researchers and a stimulus for politicians to improve health policy and health-care systems