Origins of Fine Structure in DNA Melting Curves

With the help of one-dimensional random Potts-like model we study the origins of fine structure observed on differential melting profiles of double-stranded DNA. We assess the effects of sequence arrangement on DNA melting curves through the comparison of results for random, correlated, and block sequences. Our results re-confirm the smearing out the fine structure with the increase of chain length for all types of sequence arrangements and suggest fine structure to be a finite-size effect. We have found, that the fine structure in chains comprised of blocks with the correlation in sequence is more persistent, probably, because of increased sequence disorder the blocks introduce. Many natural DNAs show a well-expressed fine structure of melting profiles. In view of our results it might mean the existence of blocks in such DNAs. The very observation of fine structure may also mean, that there exists an optimal length for natural DNAs \emph{in vivo}.Comment: 15 pages, 9 figures, JCP submissio

Photosensitive bismuth ions in lead tungstate

Electron paramagnetic resonance (EPR) signals of Bi2+ ions have been detected in the EPR spectrum of manganese-, bismuth-, and tin-doped PbWO4 single-crystals irradiated by xenon and mercury lamps at 100 K. The parameters of the Zeeman, hyperfine, and superhyperfine interactions and the localization of Bi2+ ions have been determined. © 2013 Pleiades Publishing, Ltd

Paramagnetic defects in manganese-doped lead tungstate

In manganese-doped PbWO4 crystals, low-intensity signals of triclinic clusters Mn4+-VO and Fe3+-VPb have been revealed in addition to signals of Mn2+ tetragonal centers. The Mn4+-VO cluster is formed by a Mn4+ ion in the W6+ position, which is associated with a vacancy of the nearest neighbor O2-ion, and the Fe3+-VPb cluster consists of a Fe3+ ion substituting for Pb2+ with a local compensation of by a lead vacancy. It has been shown that, in PbWO4: Mn, there is also a small amount of Mn4+ tetragonal centers located in the Pb2+ position with a nonlocal compensation of an excess charge. © 2013 Pleiades Publishing, Ltd

Effects of polarization on the transmission and localization of classical waves in weakly scattering metamaterials

We summarize the results of our comprehensive analytical and numerical studies of the effects of polarization on the Anderson localization of classical waves in one-dimensional random stacks. We consider homogeneous stacks composed entirely of normal materials or metamaterials, and also mixed stacks composed of alternating layers of a normal material and metamaterial. We extend the theoretical study developed earlier for the case of normal incidence [A. A. Asatryan et al, Phys. Rev. B 81, 075124 (2010)] to the case of off-axis incidence. For the general case where both the refractive indices and layer thicknesses are random, we obtain the long-wave and short-wave asymptotics of the localization length over a wide range of incidence angles (including the Brewster ``anomaly'' angle). At the Brewster angle, we show that the long-wave localization length is proportional to the square of the wavelength, as for the case of normal incidence, but with a proportionality coefficient substantially larger than that for normal incidence. In mixed stacks with only refractive-index disorder, we demonstrate that p-polarized waves are strongly localized, while for s-polarization the localization is substantially suppressed, as in the case of normal incidence. In the case of only thickness disorder, we study also the transition from localization to delocalization at the Brewster angle.Comment: 15 pages, 11 figures, accepted for publication in PR

Manifestation of photonic band structure in small clusters of spherical particles

We study the formation of the photonic band structure in small clusters of dielectric spheres. The first signs of the band structure, an attribute of an infinite crystal, can appear for clusters of 5 particles. Density of resonant states of a cluster of 32 spheres may exhibit a well defined structure similar to the density of electromagnetic states of the infinite photonic crystal. The resonant mode structure of finite-size aggregates is shown to be insensitive to random displacements of particles off the perfect lattice positions as large as half-radius of the particle. The results were obtained by an efficient numerical method, which relates the density of resonant states to the the scattering coefficients of the electromagnetic scattering problem. Generalized multisphere Mie (GMM) solution was used to obtain scattering matrix elements. These results are important to miniature photonic crystal design as well as understanding of light localization in dense random media.Comment: 4 pages, 2 figure

A parametric study of the lensing properties of dodecagonal photonic quasicrystals

We present a study of the lensing properties of two-dimensional (2-D) photonic quasicrystal (PQC) slabs made of dielectric cylinders arranged according to a 12-fold-symmetric square-triangle aperiodic tiling. Our full-wave numerical analysis confirms the results recently emerged in the technical literature and, in particular, the possibility of achieving focusing effects within several frequency regions. However, contrary to the original interpretation, such focusing effects turn out to be critically associated to local symmetry points in the PQC slab, and strongly dependent on its thickness and termination. Nevertheless, our study reveals the presence of some peculiar properties, like the ability to focus the light even for slabs with a reduced lateral width, or beaming effects, which render PQC slabs potentially interesting and worth of deeper investigation. Key words: Photonic quasicrystals; negative refraction; superlensing.Comment: 12 pages, 8 figures, to be pubblished in Photonics and Nanostructures - Fundamentals and Application

Hamiltonian reduction of SU(2) Dirac-Yang-Mills mechanics

The SU(2) gauge invariant Dirac-Yang-Mills mechanics of spatially homogeneous isospinor and gauge fields is considered in the framework of the generalized Hamiltonian approach. The unconstrained Hamiltonian system equivalent to the model is obtained using the gaugeless method of Hamiltonian reduction. The latter includes the Abelianization of the first class constraints, putting the second class constraints into the canonical form and performing a canonical transformation to a set of adapted coordinates such that a subset of the new canonical pairs coincides with the second class constraints and part of the new momenta is equal to the Abelian constraints. In the adapted basis the pure gauge degrees of freedom automatically drop out from the consideration after projection of the model onto the constraint shell. Apart from the elimination of these ignorable degrees of freedom a further Hamiltonian reduction is achieved due to the three dimensional group of rigid symmetry possessed by the system.Comment: 25 pages Revtex, no figure

Unconstrained SU(2) Yang-Mills Quantum Mechanics with Theta Angle

The unconstrained classical system equivalent to spatially homogeneous SU(2) Yang-Mills theory with theta angle is obtained and canonically quantized. The Schr\"odinger eigenvalue problem is solved approximately for the low lying states using variational calculation. The properties of the groundstate are discussed, in particular its electric and magnetic properties, and the value of the "gluon condensate" is calculated. Furthermore it is shown that the energy spectrum of SU(2) Yang-Mills quantum mechanics is independent of the theta angle. Explicit evaluation of the Witten formula for the topological susceptibility gives strong support for the consistency of the variational results obtained.Comment: 20 pages REVTEX, no figures, one reference added, final version to appear in Phys. Rev.

Anderson localization in metamaterials and other complex media

We review some recent (mostly ours) results on the Anderson localization of light and electron waves in complex disordered systems, including: (i) left-handed metamaterials, (ii) magneto-active optical structures, (iii) graphene superlattices, and (iv) nonlinear dielectric media. First, we demonstrate that left-handed metamaterials can significantly suppress localization of light and lead to an anomalously enhanced transmission. This suppression is essential at the long-wavelength limit in the case of normal incidence, at specific angles of oblique incidence (Brewster anomaly), and in the vicinity of the zero-epsilon or zero-mu frequencies for dispersive metamaterials. Remarkably, in disordered samples comprised of alternating normal and left-handed metamaterials, the reciprocal Lyapunov exponent and reciprocal transmittance increment can differ from each other. Second, we study magneto-active multilayered structures, which exhibit nonreciprocal localization of light depending on the direction of propagation and on the polarization. At resonant frequencies or realizations, such nonreciprocity results in effectively unidirectional transport of light. Third, we discuss the analogy between the wave propagation through multilayered samples with metamaterials and the charge transport in graphene, which enables a simple physical explanation of unusual conductive properties of disordered graphene superlatices. We predict disorder-induced resonances of the transmission coefficient at oblique incidence of the Dirac quasiparticles. Finally, we demonstrate that an interplay of nonlinearity and disorder in dielectric media can lead to bistability of individual localized states excited inside the medium at resonant frequencies. This results in nonreciprocity of the wave transmission and unidirectional transport of light.Comment: 37 pages, 30 figures, Review pape

Once more on the Witten index of 3d supersymmetric YM-CS theory

The problem of counting the vacuum states in the supersymmetric 3d Yang-Mills-Chern-Simons theory is reconsidered. We resolve the controversy between its original calculation by Witten at large volumes and the calculation based on the evaluation of the effective Lagrangian in the small volume limit. We show that the latter calculation suffers from uncertainties associated with the singularities in the moduli space of classical vacua where the Born-Oppenheimer approximation breaks down. We also show that these singularities can be accurately treated in the Hamiltonian Born-Oppenheimer method, where one has to match carefully the effective wave functions on the Abelian valley and the wave functions of reduced non-Abelian QM theory near the singularities. This gives the same result as original Witten's calculation.Comment: 27 page