Effect of different segmentation methods using optical satellite imagery to estimate fuzzy clustering parameters for Sentinel-1A SAR images

Optical and SAR data are efficient data sources for shoreline monitoring. The processing of SAR data such as feature extraction is not an easy task since the images have totally different structure than optical imagery. Determination of threshold value is a challenging task for SAR data. In this study, SENTINEL-2A optical data was used as ancillary data to predict fuzzy membership parameters for segmentation of SENTINEL-1A SAR data to extract shoreline. SENTINEL-2A and SENTINEL-1A satellite images used were taken in September 9, 2016 and September 13, 2016 respectively. Three different segmentation algorithms which are selected from object, learning and pixel-based methods. They have been exploited to obtain land and water classes which have been used as an input data for parameter estimation. Thus, the performance of different segmentation algorithm has been investigated and analysed. In the first step of the study, Mean-Shift, Random Forest and Whale Optimization algorithms have been employed to obtain water and land classes from the SENTINEL-2A image. Water and land classes derived from each algorithm – are used as input data, and then the required parameters for the fuzzy clustering of SENTINEL-1A SAR image, were calculated. Lake Constance, Germany has been chosen as the study area. In this study, additionally an interface plugin has been developed and integrated into the open source Quantum GIS software platform. The developed interface allows non-experts to process and extract the shorelines without using any parameters. But, this system requires pre-segmented data as input. Thus, the batch process calculates the required parameters

Photochemistry of barium(II) and lead(II) 2,4-dinitrostilbene-4'-monoaza-18-crown-6 complexes

The chromoionophore trans-2,4-dinitrostilbene-4′-monoaza-18-crown-6 (DMC) in CH3OH is characterized by a long-wavelength absorption (λmax = 476 nm) which is attributed to a charge transfer (CT) transition from the amine function to the nitro substituents. On protonation or complexation with Ba2+ or Pb2+ the amine is blocked and the CT transition is replaced by a ππ* transition of the stilbene moiety at higher energies. The photochemistry of all species is in accord with these assignment. While the photolysis of DMC leads to the formation of an isatogen, DMCH+, [Ba(DMC)]2+ and [Pb(DMC)]2+ undergo trans-cis photoisomerization of the stilbene moiety

p166 links membrane and intramitochondrial modules of the trypanosomal tripartite attachment complex.

The protist parasite Trypanosoma brucei has a single mitochondrion with a single unit genome termed kinetoplast DNA (kDNA). Faithfull segregation of replicated kDNA is ensured by a complicated structure termed tripartite attachment complex (TAC). The TAC physically links the basal body of the flagellum with the kDNA spanning the two mitochondrial membranes. Here, we characterized p166 as the only known TAC subunit that is anchored in the inner membrane. Its C-terminal transmembrane domain separates the protein into a large N-terminal region that interacts with the kDNA-localized TAC102 and a 34 aa C-tail that binds to the intermembrane space-exposed loop of the integral outer membrane protein TAC60. Whereas the outer membrane region requires four essential subunits for proper TAC function, the inner membrane integral p166, via its interaction with TAC60 and TAC102, would theoretically suffice to bridge the distance between the OM and the kDNA. Surprisingly, non-functional p166 lacking the C-terminal 34 aa still localizes to the TAC region. This suggests the existence of additional TAC-associated proteins which loosely bind to non-functional p166 lacking the C-terminal 34 aa and keep it at the TAC. However, binding of full length p166 to these TAC-associated proteins alone would not be sufficient to withstand the mechanical load imposed by the segregating basal bodies

EFFECT OF DIFFERENT SEGMENTATION METHODS USING OPTICAL SATELLITE IMAGERY TO ESTIMATE FUZZY CLUSTERING PARAMETERS FOR SENTINEL-1A SAR IMAGES

Optical and SAR data are efficient data sources for shoreline monitoring. The processing of SAR data such as feature extraction is not an easy task since the images have totally different structure than optical imagery. Determination of threshold value is a challenging task for SAR data. In this study, SENTINEL-2A optical data was used as ancillary data to predict fuzzy membership parameters for segmentation of SENTINEL-1A SAR data to extract shoreline. SENTINEL-2A and SENTINEL-1A satellite images used were taken in September 9, 2016 and September 13, 2016 respectively. Three different segmentation algorithms which are selected from object, learning and pixel-based methods. They have been exploited to obtain land and water classes which have been used as an input data for parameter estimation. Thus, the performance of different segmentation algorithm has been investigated and analysed. In the first step of the study, Mean-Shift, Random Forest and Whale Optimization algorithms have been employed to obtain water and land classes from the SENTINEL-2A image. Water and land classes derived from each algorithm – are used as input data, and then the required parameters for the fuzzy clustering of SENTINEL-1A SAR image, were calculated. Lake Constance, Germany has been chosen as the study area. In this study, additionally an interface plugin has been developed and integrated into the open source Quantum GIS software platform. The developed interface allows non-experts to process and extract the shorelines without using any parameters. But, this system requires pre-segmented data as input. Thus, the batch process calculates the required parameters

Ion-Mobility Mass Spectrometry for the Rapid Determination of the Topology of Interlocked and Knotted Molecules.

A rapid screening method based on traveling-wave ion-mobility spectrometry (TWIMS) combined with tandem mass spectrometry provides insight into the topology of interlocked and knotted molecules, even when they exist in complex mixtures, such as interconverting dynamic combinatorial libraries. A TWIMS characterization of structure-indicative fragments generated by collision-induced dissociation (CID) together with a floppiness parameter defined based on parent- and fragment-ion arrival times provide a straightforward topology identification. To demonstrate its broad applicability, this approach is applied here to six Hopf and two Solomon links, a trefoil knot, and a [3]catenate.Deutsche Forschungsgemeinschaft (CRC 765 “Multivalency”). Alexander von Humboldt Foundation. Swiss National Science Foundation (PZ00P2_161270). Fondation Wiener-Anspach

18-crown-6-sodium cholate complex: thermochemistry, structure and stability

18-crown-6, one of the most relevant crown ethers, and sodium cholate, steroidal surfactant classified as natural bile salt, are components of novel, synthesized coordination complex ; 18-crown-6-sodium cholate (18C6•NaCh). Like crown ethers, bile salts act as building blocks in supramolecular chemistry in order to design new functionalized materials with a desired structure and properties. In order to obtain thermal behavior of this 1:1 coordination complex, thermogravimetry and differential thermal analysis were used, as well as microscopic observations and differential scanning calorimetry. Temperature dependent infrared spectroscopy (IR) gave a detailed view into phase transitions. The structures during thermal treatment were observed with powder X-ray diffraction, and molecular models of the phases are made. Hard, glassy, colorless compound 18C6•NaCh goes through crystalline – crystalline polymorphic phase transitions at higher temperatures. The room temperature phase is indexed to a triclinic lattice, while in the high temperature phases molecules take randomly one of the two different configurations in the unit cell, resulting in the 2-fold symmetry. The formation of cholesteric liquid crystalline phase occurs simultaneously with partial decomposition, followed by the isotropisation with simultaneous and complete decomposition at much higher temperature, as obtained by IR. The results provide valuable information about the relationship between molecular structure, thermal properties, and stability of the complex, indicating the importance of an appropriate choice of cation, amphiphilic, and crown ether unit in order to synthesize compounds with desired behavior

Synthesis of macrocyclic receptors with intrinsic fluorescence featuring quinizarin moieties

An unprecedented class of macrocycles with intrinsic fluorescence consisting of phenolic trimers and quinizarin is developed. Though they are lacking strong hydrogen bonds as observed in calixarenes, the two examples introduced here each adopt a vase-like conformation with all four aromatic units pointing in one direction (syn orientation). This “cone” conformation has been confirmed by NMR spectroscopy, molecular modeling, and X-ray crystallography. The laminar, electron-rich fluorophore as part of the macrocycle allows additional contacts to enclosed guest molecules

Resolution and Determination of the Absolute Configuration of a Twisted Bis-Lactam Analogue of Troger's Base: A Comparative Spectroscopic and Computational Study

The first reported twisted bis-lactam, a racemic Tröger's base (TB) analogue (2), was resolved into its enantiomers on a chiral stationary phase HPLC column. The absolute configuration of (+)-2 was determined to be (R,R)-2 by comparing experimental and calculated vibrational circular dichroism (VCD) and electronic circular dichroism (ECD) spectra. The absolute configuration of (-)-2 was determined by comparing experimental and calculated electronic circular dichroism (ECD) spectra. The corresponding theoretical spectra were calculated using the lowest energy conformation of (R,R)-2 and (S,S)-2 at the B3LYP/6-31G(d,p) level of theory. The absolute configuration of (+)-2 was also determined to (R,R)-2 by anomalous X-ray diffraction (AXRD) in a chiral space group P212121 using Cu-irradiation resulting in a very low Flack parameter of -0.06(3), despite the heaviest element being an oxygen atom, thus unambiguously confirming the results from the spectroscopic studies. We conclude that, for the Tröger's base (TB) analogue (2), we may rank the reliability of the individual methods for AC determination as AXRD ≫ VCD > ECD, while the synergy of all three methods provides very strong confidence in the assigned ACs of (+)-(R,R)-2 and (-)-(S,S)-2

Guidelines and Recommendations on Yeast Cell Death Nomenclature

Elucidating the biology of yeast in its full complexity has major implications for science, medicine and industry. One of the most critical processes determining yeast life and physiology is cellular demise. However, the investigation of yeast cell death is a relatively young field, and a widely accepted set of concepts and terms is still missing. Here, we propose unified criteria for the definition of accidental, regulated, and programmed forms of cell death in yeast based on a series of morphological and biochemical criteria. Specifically, we provide consensus guidelines on the differential definition of terms including apoptosis, regulated necrosis, and autophagic cell death, as we refer to additional cell death routines that are relevant for the biology of (at least some species of) yeast. As this area of investigation advances rapidly, changes and extensions to this set of recommendations will be implemented in the years to come. Nonetheless, we strongly encourage the authors, reviewers and editors of scientific articles to adopt these collective standards in order to establish an accurate framework for yeast cell death research and, ultimately, to accelerate the progress of this vibrant field of research

Mechanical Bonds and Topological Effects in Radical Dimer Stabilization

While mechanical bonding stabilizes tetrathiafulvalene (TTF) radical dimers, the question arises: what role does topology play in catenanes containing TTF units? Here, we report how topology, together with mechanical bonding, in isomeric [3]- and doubly interlocked [2]catenanes controls the formation of TTF radical dimers within their structural frameworks, including a ring-in-ring complex (formed between an organoplatinum square and a {2+2} macrocyclic polyether containing two 1,5-dioxynaphthalene (DNP) and two TTF units) that is topologically isomeric with the doubly interlocked [2]catenane. The separate TTF units in the two {1+1} macrocycles (each containing also one DNP unit) of the isomeric [3]catenane exhibit slightly different redox properties compared with those in the {2+2} macrocycle present in the [2]catenane, while comparison with its topological isomer reveals substantially different redox behavior. Although the stabilities of the mixed-valence (TTF2)^(•+) dimers are similar in the two catenanes, the radical cationic (TTF^(•+))_2 dimer in the [2]catenane occurs only fleetingly compared with its prominent existence in the [3]catenane, while both dimers are absent altogether in the ring-in-ring complex. The electrochemical behavior of these three radically configurable isomers demonstrates that a fundamental relationship exists between topology and redox properties