40 research outputs found

    Illustrated Workbook for the Detection of Plant Viruses Infecting Cucurbits: Demonstration of the Use of Direct Immunoblotting Assays

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    There are at least 5 viruses of cucurbitaceous plants (squash, melons, cucumber, etc.) that frequently cause severe to complete economic loss for cucurbit producers in the tropics. These viruses are: zucchini yellow mosaic virus (ZYMV), papaya ringspot virus watermelon isolate (PRSV-W, formerly watermelon mosaic virus 1 or WMV I), watermelon mosaic virus 2 (WMV 2), cucumber mosaic virus (CMV) and squash mosaic virus (SqMV). To accurately diagnose virus infections you must use a detection technique. Many techniques are available, including host plant range analysis and serological and molecular analysis. The purpose of our workshop and this illustrated workbook is to demonstrate the use of a serological technique called direct immunoblotting. The advantage of this technique is that it requires very little special equipment, the assay is relatively easy to perform and the assay has some characteristics that make it ideal for diagnosing problems associated with surveying island communities.Funded through the U.S. Department of Agriculture Cooperative State Research, Education, and Extension Service Grant 99-38826-785

    Genome-enabled insights into the biology of thrips as crop pests

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    Background The western flower thrips, Frankliniella occidentalis (Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber, and ornamental crops. The underlying genetic mechanisms of the processes governing thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance are largely unknown. To address this gap, we present the F. occidentalis draft genome assembly and official gene set. Results We report on the first genome sequence for any member of the insect order Thysanoptera. Benchmarking Universal Single-Copy Ortholog (BUSCO) assessments of the genome assembly (size = 415.8 Mb, scaffold N50 = 948.9 kb) revealed a relatively complete and well-annotated assembly in comparison to other insect genomes. The genome is unusually GC-rich (50%) compared to other insect genomes to date. The official gene set (OGS v1.0) contains 16,859 genes, of which ~ 10% were manually verified and corrected by our consortium. We focused on manual annotation, phylogenetic, and expression evidence analyses for gene sets centered on primary themes in the life histories and activities of plant-colonizing insects. Highlights include the following: (1) divergent clades and large expansions in genes associated with environmental sensing (chemosensory receptors) and detoxification (CYP4, CYP6, and CCE enzymes) of substances encountered in agricultural environments; (2) a comprehensive set of salivary gland genes supported by enriched expression; (3) apparent absence of members of the IMD innate immune defense pathway; and (4) developmental- and sex-specific expression analyses of genes associated with progression from larvae to adulthood through neometaboly, a distinct form of maturation differing from either incomplete or complete metamorphosis in the Insecta. Conclusions Analysis of the F. occidentalis genome offers insights into the polyphagous behavior of this insect pest that finds, colonizes, and survives on a widely diverse array of plants. The genomic resources presented here enable a more complete analysis of insect evolution and biology, providing a missing taxon for contemporary insect genomics-based analyses. Our study also offers a genomic benchmark for molecular and evolutionary investigations of other Thysanoptera species

    1989 ADAP Crop Protection Conference Proceedings (University of Hawaii; Honolulu, Hawaii; 18-19 May 1989)

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    Also issued as Research Extension Series; 134 (HITAHR, College of Tropical Agriculture and Human Resources)The overall purpose of the Crop Protection Conference was to provide crop protection researchers in the Pacific Basin an opportunity to share recent findings as well as provide a forum for issues of impending interest.USDA funded project Agricultural Development in the American Pacific (ADAP

    Variability in the Response of Macrosiphum euphorbiae

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