Generalized Einstein or Green-Kubo relations for active biomolecular transport

For driven Markovian dynamics on a network of (biomolecular) states, the generalized mobilities, i.e., the response of any current to changes in an external parameter, are expressed by an integral over an appropriate current-current correlation function and thus related to the generalized diffusion constants. As only input, a local detailed balance condition is required typically even valid for biomolecular systems operating deep in the non-equilibrium regime.Comment: 4 page

Botanical Knowledge and its Differentiation by Age, Gender and Ethnicity in Southwestern Niger

Indigenous knowledge is unevenly distributed. Individual knowledge level may be affected by many factors such as gender, age, ethnicity, profession, religious and cultural beliefs, abundance and usefulness of the species. This study documents indigenous knowledge of herbaceous and woody plant species of farmers and herders in southwestern Niger. Specifically, we examine the effects of age, gender, and ethnicity on knowledge of local vegetation. Results from the study showed that on average a higher proportion of woody species was identified by the respondents compared to herbaceous species. Both gender and ethnicity had a significant effect on the identification of herbaceous species but no effect on identification of woody species. Respondents in lower age group (10 to 30 years) identified lower number of species compared to other age classes. There seems to be a curvilinear relationship between age of respondents and number of plant species identified. Results from this study reaffirm the uneven distribution of indigenous knowledge within a given area due to social factors. The main challenge is how to incorporate these social differences in knowledge of native plant species into sustainable management and conservation of community natural resources

Effective adhesion strength of specifically bound vesicles

A theoretical approach has been undertaken in order to model the thermodynamic equilibrium of a vesicle adhering to a flat substrate. The vesicle is treated in a canonical description with a fixed number of sites. A finite number of these sites are occupied by mobile ligands that are capable of interacting with a discrete number of receptors immobilized on the substrate. Explicit consideration of the bending energy of the vesicle shape has shown that the problem of the vesicle shape can be decoupled from the determination of the optimum allocation of ligands over the vesicle. The allocation of bound and free ligands in the vesicle could be determined as a function of the size of the contact zone, the ligand-receptor binding strength and the concentration of the system constituents. Several approximate solutions for different regions of system parameters are determined and in particular, the distinction between receptor-dominated equilibria and ligand-dominated equilibria is found to be important. The crossover between these two types of solutions is found to occur at a critical size of the contact zone. The presented approach enables the calculation of the effective adhesion strength of the vesicle and thus permits meaningful comparisons with relevant experiments as well as connecting the presented model with the proven success of the continuum approach for modeling the shapes of adhering vesicles. The behavior of the effective adhesion strength is analyzed in detail and several approximate expressions for it are given.Comment: 19 pages, 6 figures. To appear in Phys. Rev.

Overview of Drug Transporters in Human Placenta

The transport of drugs across the placenta is a point of great importance in pharmacotherapy during pregnancy. However, the knowledge of drug transport in pregnancy is mostly based on experimental clinical data, and the underlying biological mechanisms are not fully understood. In this review, we summarize the current knowledge of drug transporters in the human placenta. We only refer to human data since the placenta demonstrates great diversity among species. In addition, we describe the experimental models that have been used in human placental transport studies and discuss their availability. A better understanding of placental drug transporters will be beneficial for the health of pregnant women who need drug treatment and their fetuses

Complete Genome Sequence of Bacteroides ovatus V975

The complete genome sequence of Bacteroides ovatus V975 was determined. The genome consists of a single circular chromosome of 6,475,296 bp containing five rRNA operons, 68 tRNA genes, and 4,959 coding genes

Coexistence of dilute and densely packed domains of ligand-receptor bonds in membrane adhesion

We analyze the stability of micro-domains of ligand-receptor bonds that mediate the adhesion of biological model membranes. After evaluating the effects of membrane fluctuations on the binding affinity of a single bond, we characterize the organization of bonds within the domains by theoretical means. In a large range of parameters, we find the commonly suggested dense packing to be separated by a free energy barrier from a regime in which bonds are sparsely distributed. If bonds are mobile, a coexistence of the two regimes should emerge, which agrees with recent experimental observations.Comment: 6 pages, 6 figures, accepted by EP

Implications of macrophyte abundance on algal growth management: The case of three natural swimming pools with distinct macrophyte abundance

Natural swimming pools are small constructed lakes for recreational proposes. They are composed by a swimming area merging with an area planted with emergent and submerged macrophytes, which function as biological filters. Fish are absent, however a wide diversity of phytoplankton, zooplankton and macroinvertebrate species colonize these pools. Therefore, pools can be regarded as the ideal systems to extrapolate the implications of macrophyte abundance management on algal growth control. The present study was taken in three pools (A, B and C) located in Minho Region (Northern Portugal) In early summer the macrophyte area had a 30% of cover in Pool A, in B 40% and in C 60%. Phytoplankton, zooplankton and filamentous algae abundance as well as conductivity, pH, dissolved oxygen, hardness, nitrates, nitrites, ammonia, phosphates were recorded in February, April and June. The lowest densities of phytoplankton were observed in pool C. Besides, filamentous algae were abundant in the pool A, whereas in B and C they were recorded only in summer. In Pool A, zooplankton assemblage was always dominated specialists on small particle feeding, which food preference are detritus and bacteria. Conversely, in the Pool C herbivorous zooplankton was predominant. The low algal densities observed in the Pool C are explained by the presence of a well established macrophyte assemblage. These plants contribute to the reduction of algal densities by (1) creating of areas of shade; (2) removing nutrients from water column and (3) provide refuges for herbivorous zooplankton. Therefore, the present study stresses the pertinence of take in account the key role of aquatic macrophytes when management practices for algal growth control are developed

Effective Confinement as Origin of the Equivalence of Kinetic Temperature and Fluctuation-Dissipation Ratio in a Dense Shear Driven Suspension

We study response and velocity autocorrelation functions for a tagged particle in a shear driven suspension governed by underdamped stochastic dynamics. We follow the idea of an effective confinement in dense suspensions and exploit a time-scale separation between particle reorganization and vibrational motion. This allows us to approximately derive the fluctuation-dissipation theorem in a "hybrid" form involving the kinetic temperature as an effective temperature and an additive correction term. We show numerically that even in a moderately dense suspension the latter is negligible. We discuss similarities and differences with a simple toy model, a single trapped particle in shear flow