Precision and accuracy of fish length measurements obtained with two visual underwater methods

During the VITAL cruise in the Bay of Biscay in summer 2002, two devices for measuring the length of swimming fish were tested: 1) a mechanical crown that emitted a pair of parallel laser beams and that was mounted on the main camera and 2) an underwater auto-focus video camera. The precision and accuracy of these devices were compared and the various sources of measurement errors were estimated by repeatedly measuring fixed and mobile objects and live fish. It was found that fish mobility is the main source of error for these devices because they require that the objects to be measured are perpendicular to the field of vision. The best performance was obtained with the laser method where a video-replay of laser spots (projected on fish bodies) carrying real-time size information was used. The auto-focus system performed poorly because of a delay in obtaining focus and because of some technical problems

Supersymmetric NLO QCD Corrections to Resonant Slepton Production and Signals at the Tevatron and the LHC

We compute the total cross section and the transverse momentum distribution for single charged slepton and sneutrino production at hadronic colliders including NLO supersymmetric and non-supersymmetric QCD corrections. The supersymmetric QCD corrections can be substantial. We also resum the gluon transverse momentum distribution and compare our results with two Monte Carlo generators. We compute branching ratios of the supersymmetric decays of the slepton and determine event rates for the like-sign dimuon final state at the Tevatron and at the LHC.Comment: 14 pages, LaTeX, 8 figures, uses REVTex

Development of management models and assessment methods for red deer on the open hill in Scotland

Models to assist the management of red deer on the open hill in Scotland and methods for estimating red deer abundance were studied in this thesis. Currently red deer abundance is assessed by census methods with no estimate of precision. A coefficient of variation of 11-13% was estimated as the precision of repeated census counts on Rum. Misclassification in census counts was studied. Mean relative differences between two simultaneous independent counts were -0.9% (0.16) for stags, -0.5% (0.10) for hinds and 4.4% (0.61) for calves. Numbers in brackets are standard errors. Aerial line transect methodology for estimating deer numbers was tested. Mean estimates were comparable to a census count. In a case study comparison between line transects and census counts the former were shown to be quicker and cheaper for large areas. Past numbers of red deer on the open hill in Scotland estimated by Markov chain Monte Carlo methods, suggested a 30% increase between 1970 and 1992, followed by a small decrease since. Convergence problems lead to reservations about the results. A postal questionnaire survey provided information about current management practices and data availability. An age and sex structured stochastic population dynamics model for red deer was developed incorporating age, sex and density dependent survival rates and weight dependent fertility rates. An updating algorithm was proposed for calibrating the model parameters for any population using only count and cull information for that population. Prior parameter values were obtained from well studied populations. The updating algorithm was based on approximate sequential Bayesian estimation carried out by simulation. Additional features were linear filtering of population estimates and a smoothed bootstrap to generate model parameter estimates. The linear filtering reduced one step ahead prediction errors. The smoothed bootstrap allowed substantial reduction in the number of simulations. For an example red deer population posterior parameter values produced smaller variances of predicted numbers compared to prior parameter values. The calibrated model was used to investigate the effects of alternative culling strategies for a red deer population

Effects of Ignoring Survey Design Information for Data Reuse

Data are currently being used, and reused, in ecological research at an unprecedented rate. To ensure appropriate reuse however, we need to ask the question: "Are aggregated databases currently providing the right information to enable effective and unbiased reuse?" We investigate this question, with a focus on designs that purposefully favor the selection of sampling locations (upweighting the probability of selection of some locations). These designs are common and examples are those designs that have uneven inclusion probabilities or are stratified. We perform a simulation experiment by creating data sets with progressively more uneven inclusion probabilities and examine the resulting estimates of the average number of individuals per unit area (density). The effect of ignoring the survey design can be profound, with biases of up to 250% in density estimates when naive analytical methods are used. This density estimation bias is not reduced by adding more data. Fortunately, the estimation bias can be mitigated by using an appropriate estimator or an appropriate model that incorporates the design information. These are only available however, when essential information about the survey design is available: the sample location selection process (e.g., inclusion probabilities), and/or covariates used in their specification. The results suggest that such information must be stored and served with the data to support meaningful inference and data reuse.Peer reviewe

Electroweak contributions to squark--gluino production at the LHC

We calculated the electroweak contributions to the hadronic production of a squark in association with a gluino within the Minimal Supersymmetric Standard Model (MSSM). Presented are complete next-to-leading order electroweak (NLO EW) corrections at O(alpha_s^2 alpha), which include real photon and real quark radiation processes. Also considered are photon induced tree level O(alpha_s alpha) contributions.Comment: 23 pages, 15 figure

A united front against marine invaders: Developing a cost‐effective marine biosecurity surveillance partnership between government and industry

Successful detection of introduced marine pests (IMP) relies upon effective surveillance. However, the expedience of responding following IMP detection is often dependent upon the relationship between regulators and stakeholders. Effective detection of IMP in areas such as commercial ports requires a collaborative approach, as port environments can be highly complex both above and below the water. This complexity can encompass physical, logistical, safety and legislative issues. With this in mind, the aquatic pest biosecurity section within the Department of Primary Industries and Regional Development (DPIRD) developed the State‐Wide Array Surveillance Program (SWASP) in collaboration with Western Australian Port Authorities and port industry stakeholders. The SWASP is primarily based on passive settlement arrays for IMP detection. Arrays are deployed at strategic locations within Ports. Marine growth samples collected from the arrays are processed using Next‐Generation Sequencing (NGS) to identify the presence of IMP within a specific geographical location. Over 8 years, participation in SWASP has grown from 3 to 11 ports, spanning over 11,000 km, from the tropical north to temperate south of Western Australia. The programme has proven to be highly effective as a means of fostering stakeholder involvement and, importantly for IMP surveillance. The growth and success of SWASP has continued primarily because of the commitment and farsightedness of the ports involved. The regular presence of the biosecurity regulator as a partner in SWASP has provided a consistent face for biosecurity and fostered good stakeholder relationships, ensuring there is a reliable and effective ongoing marine surveillance programme for the state. Synthesis and applications. Through a united and collaborative approach to marine biosecurity surveillance, port authorities, industry and biosecurity regulators have developed the State‐Wide Array Surveillance Program (SWASP) and closed a major gap in biosecurity surveillance. The SWASP collaboration uses passive settlement arrays and molecular analyses to provide regular marine pest surveillance from the tropics to temperate regions of Western Australia. The continued commitment has embedded valuable relationships between stakeholder and regulator ensuring ongoing surveillance in marine biosecurity for the state. The Western Australian SWASP example has inspired other jurisdictions around Australia to develop similar collaborative approaches which will have far‐reaching marine biosecurity benefits

A consensus research agenda for optimising nasal drug delivery

Nasal drug delivery has specific challenges which are distinct from oral inhalation, alongside which it is often considered. The next generation of nasal products will be required to deliver new classes of molecule, e.g. vaccines, biologics and drugs with action in the brain or sinuses, to local and systemic therapeutic targets. Innovations and new tools/knowledge are required to design products to deliver these therapeutic agents to the right target at the right time in the right patients. We report the outcomes of an expert meeting convened to consider gaps in knowledge and unmet research needs in terms of (i) formulation and devices, (ii) meaningful product characterization and modeling, (iii) opportunities to modify absorption and clearance. Important research questions were identified in the areas of device and formulation innovation, critical quality attributes for different nasal products, development of nasal casts for drug deposition studies, improved experimental models, the use of simulations and nasal delivery in special populations. We offer these questions as a stimulus to research and suggest that they might be addressed most effectively by collaborative research endeavors