Bacterial genomics reveal the complex epidemiology of an emerging pathogen in Arctic and boreal ungulates

Northern ecosystems are currently experiencing unprecedented ecological change, largely driven by a rapidly changing climate. Pathogen range expansion, and emergence and altered patterns of infectious disease, are increasingly reported in wildlife at high latitudes. Understanding the causes and consequences of shifting pathogen diversity and host-pathogen interactions in these ecosystems is important for wildlife conservation, and for indigenous populations that depend on wildlife. Among the key questions are whether disease events are associated with endemic or recently introduced pathogens, and whether emerging strains are spreading throughout the region. In this study, we used a phylogenomic approach to address these questions of pathogen endemicity and spread for Erysipelothrix rhusiopathiae, an opportunistic multi-host bacterial pathogen associated with recent mortalities in arctic and boreal ungulate populations in North America. We isolated E. rhusiopathiae from carcasses associated with large-scale die-offs of muskoxen in the Canadian Arctic Archipelago, and from contemporaneous mortality events and/or population declines among muskoxen in northwestern Alaska and caribou and moose in western Canada. Bacterial genomic diversity differed markedly among these locations; minimal divergence was present among isolates from muskoxen in the Canadian Arctic, while in caribou and moose populations, strains from highly divergent clades were isolated from the same location, or even from within a single carcass. These results indicate that mortalities among northern ungulates are not associated with a single emerging strain of E. rhusiopathiae, and that alternate hypotheses need to be explored. Our study illustrates the value and limitations of bacterial genomic data for discriminating between ecological hypotheses of disease emergence, and highlights the importance of studying emerging pathogens within the broader context of environmental and host factors

The Grizzly, September 18, 1981

Thomas P. Glassmoyer Elected Board President • APO Retains Highest GPA Last Spring • Chemistry, Economics, History and English Departments Receive New Faculty • Forum Programs Now \u27til Christmas • Editorial: Just Like the Good Old Days? • Message From the President: Play an Active Part • Evening in Photography Offered • Evening School Expands Computer Program • New Staff Appointments • Dr. Schultze Represents UC in Conference • UC Buying Up Main Street: New Off-Campus Housing • Anarchy in America: Let\u27s Kill All the Lawyers • Decatur Follows Shakespeare to Germany • Electric Factory Does it Again • IFC Getting it All Together • USGA Notes • Six New Faculty • Improving Relationships and Self-Image Workshop • Lacrosse Club Announces Fall Season • Gridders Kick Off \u2781 Season With Victory • Field Hockey Looking Good • Cross Country Team Off to Fast Starthttps://digitalcommons.ursinus.edu/grizzlynews/1060/thumbnail.jp

Homo sapiens in Arabia by 85,000 years ago.

Understanding the timing and character of the expansion of Homo sapiens out of Africa is critical for inferring the colonization and admixture processes that underpin global population history. It has been argued that dispersal out of Africa had an early phase, particularly ~130-90 thousand years ago (ka), that reached only the East Mediterranean Levant, and a later phase, ~60-50 ka, that extended across the diverse environments of Eurasia to Sahul. However, recent findings from East Asia and Sahul challenge this model. Here we show that H. sapiens was in the Arabian Peninsula before 85 ka. We describe the Al Wusta-1 (AW-1) intermediate phalanx from the site of Al Wusta in the Nefud desert, Saudi Arabia. AW-1 is the oldest directly dated fossil of our species outside Africa and the Levant. The palaeoenvironmental context of Al Wusta demonstrates that H. sapiens using Middle Palaeolithic stone tools dispersed into Arabia during a phase of increased precipitation driven by orbital forcing, in association with a primarily African fauna. A Bayesian model incorporating independent chronometric age estimates indicates a chronology for Al Wusta of ~95-86 ka, which we correlate with a humid episode in the later part of Marine Isotope Stage 5 known from various regional records. Al Wusta shows that early dispersals were more spatially and temporally extensive than previously thought. Early H. sapiens dispersals out of Africa were not limited to winter rainfall-fed Levantine Mediterranean woodlands immediately adjacent to Africa, but extended deep into the semi-arid grasslands of Arabia, facilitated by periods of enhanced monsoonal rainfall

Effects of antiplatelet therapy on stroke risk by brain imaging features of intracerebral haemorrhage and cerebral small vessel diseases: subgroup analyses of the RESTART randomised, open-label trial

Background Findings from the RESTART trial suggest that starting antiplatelet therapy might reduce the risk of recurrent symptomatic intracerebral haemorrhage compared with avoiding antiplatelet therapy. Brain imaging features of intracerebral haemorrhage and cerebral small vessel diseases (such as cerebral microbleeds) are associated with greater risks of recurrent intracerebral haemorrhage. We did subgroup analyses of the RESTART trial to explore whether these brain imaging features modify the effects of antiplatelet therapy

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Convalescent plasma in patients admitted to hospital with COVID-19 (RECOVERY): a randomised controlled, open-label, platform trial

SummaryBackground Azithromycin has been proposed as a treatment for COVID-19 on the basis of its immunomodulatoryactions. We aimed to evaluate the safety and efficacy of azithromycin in patients admitted to hospital with COVID-19.Methods In this randomised, controlled, open-label, adaptive platform trial (Randomised Evaluation of COVID-19Therapy [RECOVERY]), several possible treatments were compared with usual care in patients admitted to hospitalwith COVID-19 in the UK. The trial is underway at 176 hospitals in the UK. Eligible and consenting patients wererandomly allocated to either usual standard of care alone or usual standard of care plus azithromycin 500 mg once perday by mouth or intravenously for 10 days or until discharge (or allocation to one of the other RECOVERY treatmentgroups). Patients were assigned via web-based simple (unstratified) randomisation with allocation concealment andwere twice as likely to be randomly assigned to usual care than to any of the active treatment groups. Participants andlocal study staff were not masked to the allocated treatment, but all others involved in the trial were masked to theoutcome data during the trial. The primary outcome was 28-day all-cause mortality, assessed in the intention-to-treatpopulation. The trial is registered with ISRCTN, 50189673, and ClinicalTrials.gov, NCT04381936.Findings Between April 7 and Nov 27, 2020, of 16 442 patients enrolled in the RECOVERY trial, 9433 (57%) wereeligible and 7763 were included in the assessment of azithromycin. The mean age of these study participants was65·3 years (SD 15·7) and approximately a third were women (2944 [38%] of 7763). 2582 patients were randomlyallocated to receive azithromycin and 5181 patients were randomly allocated to usual care alone. Overall,561 (22%) patients allocated to azithromycin and 1162 (22%) patients allocated to usual care died within 28 days(rate ratio 0·97, 95% CI 0·87–1·07; p=0·50). No significant difference was seen in duration of hospital stay (median10 days [IQR 5 to >28] vs 11 days [5 to >28]) or the proportion of patients discharged from hospital alive within 28 days(rate ratio 1·04, 95% CI 0·98–1·10; p=0·19). Among those not on invasive mechanical ventilation at baseline, nosignificant difference was seen in the proportion meeting the composite endpoint of invasive mechanical ventilationor death (risk ratio 0·95, 95% CI 0·87–1·03; p=0·24).Interpretation In patients admitted to hospital with COVID-19, azithromycin did not improve survival or otherprespecified clinical outcomes. Azithromycin use in patients admitted to hospital with COVID-19 should be restrictedto patients in whom there is a clear antimicrobial indication

Diet choice in an omnivorous salt-marsh crab: different food types, body size, and habitat

Abstract Studies of diet choice by omnivores have the potential to form conceptual links between studies of diet choice by herbivores, frugivores, detritivores, and predators. We examined diet choice in the omnivorous salt marsh crab Armases cinereum ( = Sesarma cinereum (Grapsidae)) in a series of laboratory experiments. Armases is sexually dimorphic, with larger males having relatively larger claws than females. In a growth experiment, an invertebrate diet supported better growth than any other single diet; however, growth also occurred on single diets of mud, leaf litter or fresh leaves. Mixed diets provided the best growth. If alternative foods were available, consumption of leaf litter and fresh leaves decreased, but these items were not dropped from the diet completely. In contrast, consumption of invertebrate prey was not affected by the availability of alternative foods. In a predation experiment, crustacean prey (an amphipod and an isopod) were more vulnerable to predation by Armases than were two small gastropod species. Only large male Armases were able to consume large numbers of gastropods. Environmental structure (plant litter or litter mimics) reduced predation rates, especially on crustaceans, which actively utilized the structure to hide from predators. Armases consumes a mixed diet because several factors (prey physical defenses, avoidance behavior of prey, growth benefits of a mixed diet) favor omnivory over a specialized diet. Similar factors may promote minor amounts of ''omnivory'' by species generally considered to be herbivores, frugivores, detritivores, and predators.

Reply to Haeusler et al.: Internal structure of the femur provides robust evidence for locomotor and taxonomic diversity at Sterkfontein

International audienc

Homo sapiens in Arabia by 85,000 years ago

Understanding the timing and character of the expansion of Homo sapiens out of Africa is critical for inferring the colonization and admixture processes that underpin global population history. It has been argued that dispersal out of Africa had an early phase, particularly ~130-90 thousand years ago (ka), that reached only the East Mediterranean Levant, and a later phase, ~60-50 ka, that extended across the diverse environments of Eurasia to Sahul. However, recent findings from East Asia and Sahul challenge this model. Here we show that H. sapiens was in the Arabian Peninsula before 85 ka. We describe the Al Wusta-1 (AW-1) intermediate phalanx from the site of Al Wusta in the Nefud desert, Saudi Arabia. AW-1 is the oldest directly dated fossil of our species outside Africa and the Levant. The palaeoenvironmental context of Al Wusta demonstrates that H. sapiens using Middle Palaeolithic stone tools dispersed into Arabia during a phase of increased precipitation driven by orbital forcing, in association with a primarily African fauna. A Bayesian model incorporating independent chronometric age estimates indicates a chronology for Al Wusta of ~95-86 ka, which we correlate with a humid episode in the later part of Marine Isotope Stage 5 known from various regional records. Al Wusta shows that early dispersals were more spatially and temporally extensive than previously thought. Early H. sapiens dispersals out of Africa were not limited to winter rainfall-fed Levantine Mediterranean woodlands immediately adjacent to Africa, but extended deep into the semi-arid grasslands of Arabia, facilitated by periods of enhanced monsoonal rainfall.Fieldwork and analyses were funded by the European Research Council (no. 295719, to M.D.P. and 617627, to J.T.S.), the SCTH, the British Academy (H.S.G. and E.M.L.S.), The Leverhulme Trust, the Australian Research Council (DP110101415 to R.G., ARC Future Fellowship Grant FT150100215 to M.D., and FT160100450 to J.L.), European Union Marie Curie International Outgoing Fellowship (PIOF-GA-2013-626474, to M.D.), and the Research Council of Norway (SFF Centre for Early Sapiens Behaviour, 262618)

United People:designing a new model of global governance

Human-driven changes on this planet have been giving rise to global warming, social instability, civil wars, and acts of terrorism. The existing system of global governance is not equipped to effectively address these enormous challenges. It is slow where one must move quickly, favors bureaucracy and politics over authentic deliberations and effective interventions, and caters to power-brokers and mega-corporations. The world therefore needs a model of global governance that serves to make and implement collectively binding decisions that acknowledge the interests of all those affected, including future generations. This governance model must coordinate the work of great (e.g. national) powers, and at the same time enable billions of people to bring their intelligence and creativity to bear on these challenges. In many ways, the quest for a new system of global governance is a grand societal challenge in itself. In this paper, we draw on idealized design to develop an ideal model of global governance and explore the collective search and experimentation efforts it implies. This so-called United People (UP) model involves a circular hierarchy in which power and communication flow in ways that help the global community to effectively address transnational challenges and problems. It involves several, relatively small, governance bodies—rather than a large parliamentary assembly that tends to cripple responsive decision-making. The UP model also serves to effectively uncover and address power abuse, simplify the financial household of global governance, and support systemic forms of collaboration with NGOs and other organizations