377 research outputs found
Functionalization of graphene at the organic/water interface
A simple method for the deposition of noble metal (Pd, Au) nanoparticles on a free-standing chemical vapour deposited graphene (CVD GR) monolayer is reported. The method consists of assembling the high purity CVD GR, by transfer from poly (methyl methacrylate) (PMMA), at the organic/water interface. Metal deposition can then proceed using either spontaneous or electrochemically-controlled processes. The resultant graphene-based metal nanoclusters are characterized using atomic force and electron microscopy techniques, and the location of the nanostructures underneath the graphene layer is determined from the position and the intensity changes of the Raman bands (D, G, 2D). This novel process for decoration of a single-layer graphene sheet with metal nanoparticles using liquid/liquid interfaces opens an alternative and useful way to prepare low dimensional carbon-based nanocomposites and electrode materials
Athena: A New Code for Astrophysical MHD
A new code for astrophysical magnetohydrodynamics (MHD) is described. The
code has been designed to be easily extensible for use with static and adaptive
mesh refinement. It combines higher-order Godunov methods with the constrained
transport (CT) technique to enforce the divergence-free constraint on the
magnetic field. Discretization is based on cell-centered volume-averages for
mass, momentum, and energy, and face-centered area-averages for the magnetic
field. Novel features of the algorithm include (1) a consistent framework for
computing the time- and edge-averaged electric fields used by CT to evolve the
magnetic field from the time- and area-averaged Godunov fluxes, (2) the
extension to MHD of spatial reconstruction schemes that involve a
dimensionally-split time advance, and (3) the extension to MHD of two different
dimensionally-unsplit integration methods. Implementation of the algorithm in
both C and Fortran95 is detailed, including strategies for parallelization
using domain decomposition. Results from a test suite which includes problems
in one-, two-, and three-dimensions for both hydrodynamics and MHD are given,
not only to demonstrate the fidelity of the algorithms, but also to enable
comparisons to other methods. The source code is freely available for download
on the web.Comment: 61 pages, 36 figures. accepted by ApJ
Structured States of Disordered Proteins from Genomic Sequences
Protein flexibility ranges from simple hinge movements to functional disorder. Around half of all human proteins contain apparently disordered regions with little 3D or functional information, and many of these proteins are associated with disease. Building on the evolutionary couplings approach previously successful in predicting 3D states of ordered proteins and RNA, we developed a method to predict the potential for ordered states for all apparently disordered proteins with sufficiently rich evolutionary information. The approach is highly accurate (79%) for residue interactions as tested in more than 60 known disordered regions captured in a bound or specific condition. Assessing the potential for structure of more than 1,000 apparently disordered regions of human proteins reveals a continuum of structural order with at least 50% with clear propensity for three-or two-dimensional states. Co-evolutionary constraints reveal hitherto unseen structures of functional importance in apparently disordered proteins. Keywords: Evolutionary couplings disorder; conformational flexibility; statistical physics; maximum entropy;
EVfold; bioinformatics; computational biology; structure predictionNational Institutes of Health (U.S.) (Grant R01GM081871
Effects of processing conditions on texture and microstructure evolution in extra-low carbon steel during multi-pass asymmetric rolling
Multi-pass rolling was carried out on extra-low carbon steel at room temperature by imposing different ratios of asymmetry in the roll-diameters as well as by conventional mode. The aim of this study is to understand the effect of shear deformation due to the asymmetric conditions on the development of the rolling texture and the possibilities of propagating the shear deformation into the mid-thickness area of the sheet. The trends of the measured texture developments in both symmetric and asymmetric rolling indicate their dependence primarily on the stability and fraction of the Goss {110}<001> and the rotated cube {001}<111> orientations. The effects of asymmetry conditions were further examined on the microstructure evolution and were correlated to the increased orientation inhomogeneity and grain fragmentation. Both texture and microstructure development showed their dependence on the applied thickness reduction per pass, on the total thickness reduction of the sheet as well as on the degree of the imposed asymmetry. It was found that shear textures can be obtained by asymmetric rolling at conditions where all three parameters-asymmetry ratio, strain in one pass, and the total accumulated strain-are as large as possible
Softened magnetic excitations in the s = 3/2 distorted triangular antiferromagnet alpha-CaCr2O4
The spin dynamics and magnetic excitations of the slightly distorted
triangular s = 3/2 system alpha-CaCr2O4 are investigated by means of Raman
spectroscopy and electron spin resonance (ESR) to elucidate its peculiar
magnetic properties. Two-magnon excitations in circular RL symmetry show a
multi-maximum structure with a dominant spectral weight at low energies. The
temperature dependence of the ESR linewidth is described by a critical
broadening DeltaHpp(T) ~ (T - T_N)^{-p} with the exponent p = 0.30(3) - 0.38(5)
for temperatures above T_N = 42.6 K. The exponent is much smaller than that of
other s = 3/2 triangular lattices. This is ascribed to soft roton-like modes,
indicative of the instability of a helical 120{\deg} phase. As an origin we
discuss a complex spin topology formed by four inequivalent nearest neighbor
and sizable next-nearest neighbor interactions.Comment: 7 pages, 4 figure
Friedewald-Estimated Versus Directly Measured Low-Density Lipoprotein Cholesterol and Treatment Implications
ObjectivesThe aim of this study was to compare Friedewald-estimated and directly measured low-density lipoprotein cholesterol (LDL-C) values.BackgroundLDL-C is routinely estimated by the Friedewald equation to guide treatment; however, compatibility with direct measurement has received relatively little scrutiny, especially at levels <70 mg/dl now targeted in high-risk patients.MethodsWe examined 1,340,614 U.S. adults who underwent lipid profiling by vertical spin density gradient ultracentrifugation (Atherotech, Birmingham, Alabama) from 2009 to 2011. Following standard practice, Friedewald LDL-C was not estimated if triglyceride levels were ≥400 mg/dl (n = 30,174), yielding 1,310,440 total patients and 191,333 patients with Friedewald LDL-C <70 mg/dl.ResultsPatients were 59 ± 15 years of age and 52% were women. Lipid distributions closely matched those in the National Health and Nutrition Examination Survey. A greater difference in the Friedewald-estimated versus directly measured LDL-C occurred at lower LDL-C and higher triglyceride levels. If the Friedewald-estimated LDL-C was <70 mg/dl, the median directly measured LDL-C was 9.0 mg/dl higher (5th to 95th percentiles, 1.8 to 15.4 mg/dl) when triglyceride levels were 150 to 199 mg/dl and 18.4 mg/dl higher (5th to 95th percentiles, 6.6 to 36.0 mg/dl) when triglyceride levels were 200 to 399 mg/dl. Of patients with a Friedewald-estimated LDL-C <70 mg/dl, 23% had a directly measured LDL-C ≥70 mg/dl (39% if triglyceride levels were concurrently 150 to 199 mg/dl; 59% if triglyceride levels were concurrently 200 to 399 mg/dl).ConclusionsThe Friedewald equation tends to underestimate LDL-C most when accuracy is most crucial. Especially if triglyceride levels are ≥150 mg/dl, Friedewald estimation commonly classifies LDL-C as <70 mg/dl despite directly measured levels ≥70 mg/dl, and therefore additional evaluation is warranted in high-risk patients
3D/2D Registration with Superabundant Vessel Reconstruction for Cardiac Resynchronization Therapy
<p>Miscellaneous classes: consistent/single studies of pregnancy associated pharmacokinetic changes (percent calculated as pregnant/nonpregnant values).</p
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Regulation of expression of the rat orthologue of mouse double minute 2 (MDM2) by H2O2-induced oxidative stress in neonatal rat cardiac myocytes.
The Mdm2 ubiquitin ligase is an important regulator of p53 abundance and p53-dependent apoptosis. Mdm2 expression is frequently regulated by a p53 Mdm2 autoregulatory loop whereby p53 stimulates Mdm2 expression and hence its own degradation. Although extensively studied in cell lines, relatively little is known about Mdm2 expression in heart where oxidative stress (exacerbated during ischemia-reperfusion) is an important pro-apoptotic stimulus. We demonstrate that Mdm2 transcript and protein expression are induced by oxidative stress (0.2 mm H(2)O(2)) in neonatal rat cardiac myocytes. In other cells, constitutive Mdm2 expression is regulated by the P1 promoter (5' to exon 1), with inducible expression regulated by the P2 promoter (in intron 1). In myocytes, H(2)O(2) increased Mdm2 expression from the P2 promoter, which contains two p53-response elements (REs), one AP-1 RE, and two Ets REs. H(2)O(2) did not detectably increase expression of p53 mRNA or protein but did increase expression of several AP-1 transcription factors. H(2)O(2) increased binding of AP-1 proteins (c-Jun, JunB, JunD, c-Fos, FosB, and Fra-1) to an Mdm2 AP-1 oligodeoxynucleotide probe, and chromatin immunoprecipitation assays showed it increased binding of c-Jun or JunB to the P2 AP-1 RE. Finally, antisense oligonucleotide-mediated reduction of H(2)O(2)-induced Mdm2 expression increased caspase 3 activation. Thus, increased Mdm2 expression is associated with transactivation at the P2 AP-1 RE (rather than the p53 or Ets REs), and Mdm2 induction potentially represents a cardioprotective response to oxidative stress
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