Impacts of drainage, restoration and warming on boreal wetland greenhouse gas fluxes

Northern wetlands with organic soil i.e., mires are significant carbon storages. This key ecosystem service may be threatened by anthropogenic activities and climate change, yet we still lack a consensus on how these major changes affects their carbon sink capacities. We studied how forestry drainage and restoration combined with experimental warming, impacts greenhouse gas fluxes of wetlands with peat. We measured CO2 and CH4 during two and N2O fluxes during one growing season using the chamber method. Gas fluxes were primarily controlled by water table, leaf area and temperature. Land use had a clear impact of on CO2 exchange. Forestry drainage increased respiration rates and decreased field layer net ecosystem CO2 uptake (NEE) and leaf area index (LAI), while at restoration sites the flux rates and LAI had recovered to the level of undrained sites. CH4 emissions were exceptionally low at all sites during our study years due to natural drought, but still somewhat lower at drained compared to undrained sites. Moderate warming triggered an increase in LAI across all land use types. This was accompanied by an increase in cumulative seasonal NEE. Restoration appeared to be an effective tool to return the ecosystem functions of these wetlands as we found no differences in LAI or any gas flux components (PMAX, Reco, NEE, CH4 or N2O) between restored and undrained sites. We did not find any signs that moderate warming would compromise the return of the ecosystem functions related to C sequestration. (C) 2018 Elsevier B.V. All rights reserved.Peer reviewe

Changes in perceived oral health in a longitudinal population-based study

Objectives: The aim was to examine whether the changes in different measures of perceived oral health (POH) were similar and related to each other over 11 years in the Finnish adult population in a longitudinal setting. Perceived oral health was measured by means of subjective oral health (SOH), self‐assessed treatment need (STN), and oral health‐related quality of life (OHRQoL).Methods: The data were collected as part of the nationally representative Health 2000 and Health 2011 (BRIF 8901) surveys on Finnish adults born in 1981 or earlier. SOH and STN were measured using single items and OHRQoL using the 14‐item Oral Health Impact Profile (OHIP‐14). The changes in STN and OHRQoL were reported by age group and by gender. Age groups (born in 1971 or later, in 1956‐1970, in 1946‐1955, or in 1945 or earlier) were based on access to subsidized oral health care. General linear mixed models for changes in perceived oral health variables were conducted.Results: Subjective oral health and oral health‐related quality of life with impacts occurring occasionally, fairly often, or very often (OFoVo) showed similar results and remained good or improved in the majority of the participants. Self‐assessed treatment need in the population showed less consistent results. Subjective oral health was good in the adult population. About half of the participants, regardless of age and gender, reported self‐assessed treatment need in both years, showing a decrease among women and an increase in the youngest group. Perceived oral health improved significantly in the two oldest age groups regardless of the measure. The general linear mixed model revealed that changes in all three perceived oral health variables were related even when adjusted for age and gender.Conclusion: Multiple perceived oral health measures might be useful for service planning, as the changes in the three separate measures used in this longitudinal study were various and thus measured different aspects of perceived oral health. Research including both self‐perceived and clinical indicators is needed to understand need for care as a whole.</p

BMI in childhood and adolescence is associated with impaired reproductive function-a population-based cohort study from birth to age 50 years

Peer reviewe

Chlamydophila pneumoniae induces a sustained airway hyperresponsiveness and inflammation in mice

Background: It has been reported that Chlamydophila (C.) pneumoniae is involved in the initiation and promotion of asthma and chronic obstructive pulmonary diseases (COPD). Surprisingly, the effect of C. pneumoniae on airway function has never been investigated.Methods: In this study, mice were inoculated intranasally with C. pneumoniae (strain AR39) on day 0 and experiments were performed on day 2, 7, 14 and 21.Results: We found that from day 7, C. pneumoniae infection causes both a sustained airway hyperresponsiveness and an inflammation. Interferon-γ (IFN-γ) and macrophage inflammatory chemokine-2 (MIP-2) levels in bronchoalveolar lavage (BAL)-fluid were increased on all experimental days with exception of day 7 where MIP-2 concentrations dropped to control levels. In contrast, tumor necrosis factor-α (TNF-α) levels were only increased on day 7. From day 7 to 21 epithelial damage and secretory cell hypertrophy was observed. It is suggested that, the inflammatory cells/mediators, the epithelial damage and secretory cell hypertrophy contribute to initiation of airway hyperresponsiveness.Conclusion: Our study demonstrates for the first time that C. pneumoniae infection can modify bronchial responsiveness. This has clinical implications, since additional changes in airway responsiveness and inflammation-status induced by this bacterium may worsen and/or provoke breathlessness in asthma and COPD

Identification and characterization of a novel zebrafish (Danio rerio) pentraxin-carbonic anhydrase

Background: Carbonic anhydrases (CAs) are ubiquitous, essential enzymes which catalyze the conversion of carbon dioxide and water to bicarbonate and H + ions. Vertebrate genomes generally contain gene loci for 15-21 different CA isoforms, three of which are enzymatically inactive. CAVI is the only secretory protein of the enzymatically active isoforms. We discovered that non-mammalian CA VI contains a C-terminal pentraxin (PTX) domain, a novel combination for both CAs and PTXs.Methods: We isolated and sequenced zebrafish (Danio rerio) CA VI cDNA, complete with the sequence coding for the PTX domain, and produced the recombinant CA VI-PTX protein. Enzymatic activity and kinetic parameters were measured with a stopped-flow instrument. Mass spectrometry, analytical gel filtration and dynamic light scattering were used for biophysical characterization. Sequence analyses and Bayesian phylogenetics were used in generating hypotheses of protein structure and CAVI gene evolution. A CAVI-PTX antiserum was produced, and the expression of CA VI protein was studied by immunohistochemistry. A knock-down zebrafish model was constructed, and larvae were observed up to five days post-fertilization (dpf). The expression of ca6 mRNA was quantitated by qRT-PCR in different developmental times in morphant and wild-type larvae and in different adult fish tissues. Finally, the swimming behavior of the morphant fish was compared to that of wild-type fish.Results: The recombinant enzyme has a very high carbonate dehydratase activity. Sequencing confirms a 530-residue protein identical to one of the predicted proteins in the Ensembl database (ensembl. org). The protein is pentameric in solution, as studied by gel filtration and light scattering, presumably joined by the PTX domains.Mass spectrometry confirms the predicted signal peptide cleavage and disulfides, and N-glycosylation in two of the four observed glycosylation motifs. Molecular modeling of the pentamer is consistent with the modifications observed in mass spectrometry. Phylogenetics and sequence analyses provide a consistent hypothesis of the evolutionary history of domains associated with CAVI in mammals and nonmammals. Briefly, the evidence suggests that ancestral CA VI was a transmembrane protein, the exon coding for the cytoplasmic domain was replaced by one coding for PTX domain, and finally, in the therian lineage, the PTX-coding exon was lost. We knocked down CA VI expression in zebrafish embryos with antisense morpholino oligonucleotides, resulting in phenotype features of decreased buoyancy and swim bladder deflation in 4 dpf larvae.Discussion: These findings provide novel insights into the evolution, structure, and function of this unique CA form

Longitudinal associations between sleep and anxiety during pregnancy, and the moderating effect of resilience, using parallel process latent growth curve models

Background: For many women, pregnancy-related sleep disturbances and pregnancy-related anxiety change as pregnancy progresses and both are associated with lower maternal quality of life and less favorable birth outcomes. Thus, the interplay between these two problems across pregnancy is of interest. In addition, psychological resilience may explain individual differences in this association, as it may promote coping with both sleep disturbances and anxiety, and thereby reduce their mutual effects. Therefore, the aim of the current study was to examine whether sleep quality and sleep duration, and changes in sleep are associated with the level of and changes in anxiety during pregnancy. Furthermore, the study tested the moderating effect of resilience on these associations.Methods: At gestational weeks 14, 24, and 34, 532 pregnant women from the FinnBrain Birth Cohort Study in Finland filled out questionnaires on general sleep quality, sleep duration and pregnancy-related anxiety; resilience was assessed in week 14.Results: Parallel process latent growth curve models showed that shorter initial sleep duration predicted a higher initial level of anxiety, and a higher initial anxiety level predicted a faster shortening of sleep duration. Changes in sleep duration and changes in anxiety over the course of pregnancy were not related. The predicted moderating effect of resilience was not found.Conclusions: The results suggested that pregnant women reporting anxiety problems should also be screened for sleeping problems, and vice versa, because women who experienced one of these pregnancy-related problems were also at risk of experiencing or developing the other problem. (C) 2017 Elsevier B.V. All rights reserved.</p

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Background: The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global, community-driven effort to evaluate and improve the computational annotation of protein function. Results: Here, we report on the results of the third CAFA challenge, CAFA3, that featured an expanded analysis over the previous CAFA rounds, both in terms of volume of data analyzed and the types of analysis performed. In a novel and major new development, computational predictions and assessment goals drove some of the experimental assays, resulting in new functional annotations for more than 1000 genes. Specifically, we performed experimental whole genome mutation screening in Candida albicans and aeruginosa genomes, which provided us with genome-wide experimental data for genes associated with biofilm formation and motility. We further performed targeted assays on selected genes in Drosophila melanogaster, which we suspected of being involved in long-term memory. Conclusion: We conclude that while predictions of the molecular function and biological process annotations have slightly improved over time, those of the cellular component have not. Term-centric prediction of experimental annotations remains equally challenging; although the performance of the top methods is significantly better than the expectations set by baseline methods in C. albicans and D. melanogaster, it leaves considerable room and need for improvement. Finally, we report that the CAFA community now involves a broad range of participants with expertise in bioinformatics, biological experimentation, biocuration, and bio-ontologies, working together to improve functional annotation, computational function prediction, and our ability to manage big data in the era of large experimental screens