Assessment of Canopy Chlorophyll Content Retrieval in Maize and Soybean: Implications of Hysteresis on the Development of Generic Algorithms

Canopy chlorophyll content (Chl) closely relates to plant photosynthetic capacity, nitrogen status and productivity. The goal of this study is to develop remote sensing techniques for accurate estimation of canopy Chl during the entire growing season without re-parameterization of algorithms for two contrasting crop species, maize and soybean. These two crops represent different biochemical mechanisms of photosynthesis, leaf structure and canopy architecture. The relationships between canopy Chl and reflectance, collected at close range and resampled to bands of the Multi Spectral Instrument (MSI) aboard Sentinel-2, were analyzed in samples taken across the entirety of the growing seasons in three irrigated and rainfed sites located in eastern Nebraska between 2001 and 2005. Crop phenology was a factor strongly influencing the reflectance of both maize and soybean. Substantial hysteresis of the reflectance vs. canopy Chl relationship existed between the vegetative and reproductive stages. The effect of the hysteresis on vegetation indices (VI), applied for canopy Chl estimation, depended on the bands used and their formulation. The hysteresis greatly affected the accuracy of canopy Chl estimation by widely-used VIs with near infrared (NIR) and red reflectance (e.g., normalized difference vegetation index (NDVI), enhanced vegetation index (EVI) and simple ratio (SR)). VIs that use red edge and NIR bands (e.g., red edge chlorophyll index (CIred edge), red edge NDVI and the MERIS terrestrial chlorophyll index (MTCI)) were minimally affected by crop phenology (i.e., they exhibited little hysteresis) and were able to accurately estimate canopy Chl in two crops without algorithm re-parameterization and, thus, were found to be the best candidates for generic algorithms to estimate crop Chl using the surface reflectance products of MSI Sentinel-2

Toward Generic Models for Green LAI Estimation in Maize and Soybean: Satellite Observations

Informative spectral bands for green leaf area index (LAI) estimation in two crops were identified and generic models for soybean and maize were developed and validated using spectral data taken at close range. The objective of this paper was to test developed models using Aqua and Terra MODIS, Landsat TM and ETM+, ENVISAT MERIS surface reflectance products, and simulated data of the recently-launched Sentinel 2 MSI and Sentinel 3 OLCI. Special emphasis was placed on testing generic models which require no re-parameterization for these species. Four techniques were investigated: support vector machines (SVM), neural network (NN), multiple linear regression (MLR), and vegetation indices (VI). For each technique two types of models were tested based on (a) reflectance data, taken at close range and resampled to simulate spectral bands of satellite sensors; and (b) surface reflectance satellite products. Both types of models were validated using MODIS, TM/ETM+, and MERIS data. MERIS was used as a prototype of OLCI Sentinel-3 data which allowed for assessment of the anticipated accuracy of OLCI. All models tested provided a robust and consistent selection of spectral bands related to green LAI in crops representing a wide range of biochemical and structural traits. The MERIS observations had the lowest errors (around 11%) compared to the remaining satellites with observational data. Sentinel 2 MSI and OLCI Sentinel 3 estimates, based on simulated data, had errors below 8%. However the accuracy of these models with actual MSI and OLCI surface reflectance products remains to be determined

Informative spectral bands for remote green LAI estimation in C3 and C4 crops

Green leaf area index (LAI) provides insight into the productivity, physiological and phenological status of vegetation. Measurement of spectral reflectance offers a fast and nondestructive estimation of green LAI. A number of methods have been used for the estimation of green LAI; however, the specific spectral bands employed varied widely among the methods and data used. Our objectives were (i) to find informative spectral bands retained in three types of methods, neural network (NN), partial least squares (PLS) regression and vegetation indices (VI), for estimating green LAI in maize (a C4 species) and soybean (a C3 species); (ii) to assess the accuracy of the algorithms estimating green LAI using a minimal number of bands for each crop and generic algorithms for the two crops combined. Hyperspectral reflectance and green LAI of irrigated and rainfed maize and soybean were taken during eight years of observations (altogether 24 field-years) in very different weather conditions. The bands retained in the best NN, PLS and VI methods were in close agreement. The validity of these bands was further confirmed via the uninformative variable elimination PLS technique. The red edge and the NIR bands were selected in all models and were found the most informative. Identifying informative spectral bands across all four techniques provided insight into spectral features of reflectance specific for each species as well as those that are common to species with different leaf structures, canopy architectures and photosynthetic pathways. The analyses allowed development of algorithms for estimating green LAI in soybean and maize with no re-parameterization. These findings lay a strong foundation for the development of generic algorithms which is crucial for remote sensing of vegetation biophysical parameters

The Parameterised Post-Newtonian Limit of Fourth-Order Theories of Gravity

We determine the full post-Newtonian limit of theories of gravity that extend general relativity by replacing the Ricci scalar, R, in the generating Lagrangian by some analytic function, f(R). We restrict ourselves to theories that admit Minkowski space as a suitable background, and perform a perturbative expansion in the manner prescribed by the parameterised post-Newtonian formalism. Extra potentials are found to be present that are not accounted for in the usual treatment, and a discussion is provided on how they may be used to observationally distinguished these theories from general relativity at the post-Newtonian level.Comment: 12 page

Continued reduction in HPV prevalence and early evidence of herd immunity following the human papillomavirus vaccination programme in Scotland

In 2008, a national human papillomavirus (HPV) immunization program using a bivalent vaccine against HPV types 16 and 18 was implemented in Scotland along with a national surveillance program designed to determine the longitudinal effects of vaccination on HPV infection at the population level. Each year during 2009–2013, the surveillance program conducted HPV testing on a proportion of liquid-based cytology samples from women undergoing their first cervical screening test for precancerous cervical disease. By linking vaccination, cervical screening, and HPV testing data, over the study period we found a decline in HPV types 16 and 18, significant decreases in HPV types 31, 33, and 45 (suggesting cross-protection), and a nonsignificant increase in HPV 51. In addition, among nonvaccinated women, HPV types 16 and 18 infections were significantly lower in 2013 than in 2009. Our results preliminarily indicate herd immunity and sustained effectiveness of the bivalent vaccine on virologic outcomes at the population level

Comparison of the Effects of RAS vs. Kain-Fritsch Convective Schemes on Katrina Forecasts with GEOS-5

Global forecasts were made with the 0.25-degree latitude version of GEOS-5, with the RAS scheme and with the Kain-Fritsch scheme. Examination was made of the Katrina (2005) hurricane simulation. Replacement of the RAS convective scheme with the K-F scheme results in a much more vigorous Katrina, closer to reality. Still, the result is not as vigorous as reality. In terms of wind maximum, the gap was closed by ~50%. The result seems to be due to the RAS scheme drying out the boundary layer, thus hampering the grid-scale secondary circulation and attending cyclone development. The RAS case never developed a full warm core, whereas the K-F case did. Not shown here: The K-F scheme also resulted in a more vigorous storm than when GEOS-5 is run with no convective parameterization. Also not shown: An experiment in which the RAS firing level was moved up by 3 model levels resulted in a stronger, warm-core storm, though not as strong as the K-F case. Effects on storm track were noticed, but not studied

Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes

Agriculture is being challenged to provide food, and increasingly fuel, for an expanding global population. Producing bioenergy crops on marginal lands—farmland suboptimal for food crops—could help meet energy goals while minimizing competition with food production. However, the ecological costs and benefits of growing bioenergy feedstocks—primarily annual grain crops—on marginal lands have been questioned. Here we show that perennial bioenergy crops provide an alternative to annual grains that increases biodiversity of multiple taxa and sustain a variety of ecosystem functions, promoting the creation of multifunctional agricultural landscapes. We found that switchgrass and prairie plantings harbored significantly greater plant, methanotrophic bacteria, arthropod, and bird diversity than maize. Although biomass production was greater in maize, all other ecosystem services, including methane consumption, pest suppression, pollination, and conservation of grassland birds, were higher in perennial grasslands. Moreover, we found that the linkage between biodiversity and ecosystem services is dependent not only on the choice of bioenergy crop but also on its location relative to other habitats, with local landscape context as important as crop choice in determining provision of some services. Our study suggests that bioenergy policy that supports coordinated land use can diversify agricultural landscapes and sustain multiple critical ecosystem services

An alternative method using digital cameras for continuous monitoring of crop status

Crop physiological and phenological status is an important factor that characterizes crop yield as well as carbon exchange between the atmosphere and the terrestrial biosphere in agroecosystems. It is difficult to establish high frequency observations of crop status in multiple locations using conventional approaches such as agronomical sampling and also remote sensing techniques that use spectral radiometers because of the labor intensive work required for field surveys and the high cost of radiometers designed for scientific use. This study explored the potential utility of an inexpensive camera observation system called crop phenology recording system (CPRS) as an alternative approach for the observation of seasonal change in crop growth. The CPRS consisting of two compact digital cameras was used to capture visible and near infrared (NIR) images of maize in 2009 and soybean in 2010 for every hour both day and night continuously. In addition, a four channel sensor SKYE measured crop reflectance and Moderate Resolution Imaging Spectroradiometer (MODIS) satellite images were acquired over crop fields. The six different camera- radiometer- and MODIS-derived vegetation indices (VIs) were calculated and compared with the ground-measured crop biophysical parameters. In addition to VIs that use digital numbers, we proposed to use daytime exposure value-adjusted VIs. The camera-derived VIs were compared with the VIs calculated from spectral reflectance observations taken by SKYE and MODIS. It was found that new camera-derived VIs using daytime exposure values are closely related to VIs calculated using SKYE and MODIS reflectance and good proxies of crop biophysical parameters. Camera-derived green chlorophyll index, simple ratio and NDVI were found to be able to estimate the total leaf area index (LAI) of maize and soybean with high accuracy and were better than the widely used 2g-r-b. However, camera-derived 2g-r-b showed the best accuracy in estimating daily fAPAR in vegetative and reproductive stages of both crops. Visible atmospherically resistant vegetation index showed the highest accuracy in the estimation of the green LAI of maize. A unique VI, calculated from nighttime flash NIR images called the nighttime relative brightness index of NIR, showed a strong relationship with total aboveground biomass for both crops. The study concludes that the CPRS is a practical and cost-effective approach for monitoring temporal changes in crop growth, and it also provides an alternative source of ground truth data to validate time-series VIs derived from MODIS and other satellite systems

An alternative method using digital cameras for continuous monitoring of crop status

Crop physiological and phenological status is an important factor that characterizes crop yield as well as carbon exchange between the atmosphere and the terrestrial biosphere in agroecosystems. It is difficult to establish high frequency observations of crop status in multiple locations using conventional approaches such as agronomical sampling and also remote sensing techniques that use spectral radiometers because of the labor intensive work required for field surveys and the high cost of radiometers designed for scientific use. This study explored the potential utility of an inexpensive camera observation system called crop phenology recording system (CPRS) as an alternative approach for the observation of seasonal change in crop growth. The CPRS consisting of two compact digital cameras was used to capture visible and near infrared (NIR) images of maize in 2009 and soybean in 2010 for every hour both day and night continuously. In addition, a four channel sensor SKYE measured crop reflectance and Moderate Resolution Imaging Spectroradiometer (MODIS) satellite images were acquired over crop fields. The six different camera- radiometer- and MODIS-derived vegetation indices (VIs) were calculated and compared with the ground-measured crop biophysical parameters. In addition to VIs that use digital numbers, we proposed to use daytime exposure value-adjusted VIs. The camera-derived VIs were compared with the VIs calculated from spectral reflectance observations taken by SKYE and MODIS. It was found that new camera-derived VIs using daytime exposure values are closely related to VIs calculated using SKYE and MODIS reflectance and good proxies of crop biophysical parameters. Camera-derived green chlorophyll index, simple ratio and NDVI were found to be able to estimate the total leaf area index (LAI) of maize and soybean with high accuracy and were better than the widely used 2g-r-b. However, camera-derived 2g-r-b showed the best accuracy in estimating daily fAPAR in vegetative and reproductive stages of both crops. Visible atmospherically resistant vegetation index showed the highest accuracy in the estimation of the green LAI of maize. A unique VI, calculated from nighttime flash NIR images called the nighttime relative brightness index of NIR, showed a strong relationship with total aboveground biomass for both crops. The study concludes that the CPRS is a practical and cost-effective approach for monitoring temporal changes in crop growth, and it also provides an alternative source of ground truth data to validate time-series VIs derived from MODIS and other satellite systems