An Automated System for Cryo-Electron Microscopy Sample Preparation

Cryo-electron microscopy (CryoEM) is a procedure that has become popular for imaging radiation intolerant structures under electron microscopes. CryoEM involves maintaining the sample at cryogenic temperatures throughout the imaging process This has the effect of minimizing damage caused by the electron beam, and results in higher quality images than can be obtained through more traditional imaging methods. The preparation of samples for cryo-electron microscopy studies is currently a labor and time intensive process. Samples must be applied to an imaging substrate under tightly controlled environmental conditions, formed into a thin film, vitrified with liquid ethane, and placed into temporary storage under cryogenic conditions. The grid preparation process is very sensitive to procedural factors, thus the successful creation of viable samples depends on tightly controlling the conditions under which grids are prepared. Several devices which automate portions of the specimen preparation process are currently in use; however, these systems heavily rely on a human operator to function properly. This thesis describes a system that is capable of fully automating the sample preparation process. The resulting system minimizes the need for human input during specimen preparation, improves process control, and provides similar levels of environmental control. Testing shows that the resulting system is capable of preparing samples without human interaction

A New Perspective on Coastally Trapped Disturbances Using Data from the Satellite Era

The ability of global climate models to simulate accurately marine stratiform clouds continues to challenge the atmospheric science community. These cloud types, which account for a large uncertainty in Earth’s radiation budget, are generally difficult to characterize due to their shallowness and spatial inhomogeneity. Previous work investigating marine boundary layer (MBL) clouds off the California coast has focused on clouds that form under the typical northerly flow regime during the boreal warm season. From about June through September, however, these northerly winds may reverse and become southerly as part of a coastally trapped disturbance (CTD). As the flow surges northward, it is accompanied by a broad cloud deck. Because these events are difficult to forecast, in situ observations of CTDs are few and far between, and little is known about their cloud physical properties. A climatological perspective of 23 CTD events—spanning the years from 2004 to 2016—is presented using several data products, including model reanalyses, buoys, and satellites. For the first time, satellite retrievals suggest that CTD cloud decks may play a unique role in the radiation budget due to a combination of aerosol sources that enhance cloud droplet number concentration and reduce cloud droplet effective radius. This particular type of cloud regime should therefore be treated differently than that which is more commonly found in the summertime months over the northeast Pacific Ocean. The potential influence of a coherent wind stress cycle on sea surface temperatures and sea salt aerosol is also explored

The probable, possible, and novel functions of ERp29

The luminal endoplasmic reticulum (ER) protein of 29 kDa (ERp29) is a ubiquitously expressed cellular agent with multiple critical roles. ERp29 regulates the biosynthesis and trafficking of several transmembrane and secretory proteins, including the cystic fibrosis transmembrane conductance regulator (CFTR), the epithelial sodium channel (ENaC), thyroglobulin, connexin 43 hemichannels, and proinsulin. ERp29 is hypothesized to promote ER t

Marine Boundary Layer Clouds Associated with Coastally Trapped Disturbances: Observations and Model Simulations

This work has been accepted to Journal of Atmospheric Sciences. The AMS does not guarantee that the copy provided here is an accurate copy of the final published work.Modeling marine low clouds and fog in coastal environments remains an outstanding challenge due to the inherently complex ocean–land–atmosphere system. This is especially important in the context of global circulation models due to the profound radiative impact of these clouds. This study utilizes aircraft and satellite measurements, in addition to numerical simulations using the Weather Research and Forecasting (WRF) Model, to examine three well-observed coastally trapped disturbance (CTD) events from June 2006, July 2011, and July 2015. Cloud water-soluble ionic and elemental composition analyses conducted for two of the CTD cases indicate that anthropogenic aerosol sources may impact CTD cloud decks due to synoptic-scale patterns associated with CTD initiation. In general, the dynamics and thermodynamics of the CTD systems are well represented and are relatively insensitive to the choice of physics parameterizations; however, a set of WRF simulations suggests that the treatment of model physics strongly influences CTD cloud field evolution. Specifically, cloud liquid water path (LWP) is highly sensitive to the choice of the planetary boundary layer (PBL) scheme; in many instances, the PBL scheme affects cloud extent and LWP values as much as or more than the microphysics scheme. Results suggest that differences in the treatment of entrainment and vertical mixing in the Yonsei University (nonlocal) and Mellor–Yamada–Janjić (local) PBL schemes may play a significant role. The impact of using different driving models—namely, the North American Mesoscale Forecast System (NAM) 12-km analysis and the NCEP North American Regional Reanalysis (NARR) 32-km products—is also investigated

Marine Boundary Layer Clouds Associated with Coastally Trapped Disturbances: Observations and Model Simulations

Modeling marine low clouds and fog in coastal environments remains an outstanding challenge due to the inherently complex ocean–land–atmosphere system. This is especially important in the context of global circulation models due to the profound radiative impact of these clouds. This study utilizes aircraft and satellite measurements, in addition to numerical simulations using the Weather Research and Forecasting (WRF) Model, to examine three well-observed coastally trapped disturbance (CTD) events from June 2006, July 2011, and July 2015. Cloud water-soluble ionic and elemental composition analyses conducted for two of the CTD cases indicate that anthropogenic aerosol sources may impact CTD cloud decks due to synoptic-scale patterns associated with CTD initiation. In general, the dynamics and thermodynamics of the CTD systems are well represented and are relatively insensitive to the choice of physics parameterizations; however, a set of WRF simulations suggests that the treatment of model physics strongly influences CTD cloud field evolution. Specifically, cloud liquid water path (LWP) is highly sensitive to the choice of the planetary boundary layer (PBL) scheme; in many instances, the PBL scheme affects cloud extent and LWP values as much as or more than the microphysics scheme. Results suggest that differences in the treatment of entrainment and vertical mixing in the Yonsei University (nonlocal) and Mellor–Yamada–Janjić (local) PBL schemes may play a significant role. The impact of using different driving models—namely, the North American Mesoscale Forecast System (NAM) 12-km analysis and the NCEP North American Regional Reanalysis (NARR) 32-km products—is also investigated

Thermal and magnetic properties of a low-temperature antiferromagnet Ce4_4Pt12_{12}Sn25_{25}

We report specific heat ($C$) and magnetization ($M$) of single crystalline Ce$_4$Pt$_{12}$Sn$_{25}$ at temperature down to $\sim$50mK and in fields up to 3T. $C/T$ exhibits a sharp anomaly at 180mK, with a large $\Delta C/T\sim$30J/molK$^2$-Ce, which, together with the corresponding cusp-like magnetization anomaly, indicates an antiferromagnetic (AFM) ground state with a N\'eel temperature $T_N$=180mK. Numerical calculations based on a Heisenberg model reproduce both zero-field $C$ and $M$ data, thus placing Ce$_4$Pt$_{12}$Sn$_{25}$ in the weak exchange coupling $J<J_c$ limit of the Doniach diagram, with a very small Kondo scale $T_K\ll T_N$. Magnetic field suppresses the AFM state at $H^*\approx$0.7T, much more effectively than expected from the Heisenberg model, indicating additional effects possibly due to frustration or residual Kondo screening.Comment: 8 pages, 7 figures, accepted for publication in Phys. Rev.

Vigorous Physical Activity Among Tweens, VERB Summer Scorecard Program, Lexington, Kentucky, 2004-2007

Introduction: Empirical examinations of the efficacy of community-based programs to increase and sustain physical activity among youth are lacking. This study describes changes in vigorous physical activity during a 3-year period among children aged 9 to 13 years (tweens) in Lexington, Kentucky, following introduction of the VERB Summer Scorecard (VSS) intervention. Methods: A community coalition, guided by a marketing plan that addressed motivators for tweens to participate in physical activity, designed and implemented VSS. Youth used a scorecard to monitor their physical activity, which was verified by adults. There were 3,428 students surveyed in 2004; 1,976 in 2006; and 2,051 in 2007 (mean age for 2004, 2006, and 2007, 12 y). For each year, we performed Χ2 tests and computed summary statistics for age, sex, and grade. Chi-square tests and cumulative logit models were used to analyze physical activity trends among VSS participants, VSS nonparticipants, and a reference group. Results: The proportion of youth who reported frequent vigorous physical activity increased from 32% in 2004 to 42% in 2007. The proportion of VSS participants with moderate or high levels of vigorous physical activity increased by approximately 17 percentage points, more than twice the proportion of nonparticipants. Conclusion: Interventions such as VSS may empower communities to take action to encourage greater physical activity among youth