Soil carbon stocks in a Sitka spruce chronosequence following afforestation

peer-reviewedIncreasing concentrations ofCO2 and other greenhouse gases in the atmosphere are leading to concern worldwide due to their contribution to the greenhouse effect. As the body of evidence supporting the need for change from a carbon rich economy/society becomes stronger, international mitigation agreements require high quality and precise information. Following the Kyoto Protocol and EU agreements to reduce carbon production, countries could utilise default values or comparable international data to calculate their carbon budgets. Initially, approximations were successful for generating a guide to a national carbon stock for reporting GHG inventories to the UNFCCC (Tier 1 ). However, now that the second phase of the Kyoto protocol is running until 2020, greater accuracy is essential and, where possible, nationally specific information is increasingly required (Tier 3, UNFCCC). Forestry and forest soils are seen as a key component in the carbon cycle and depending on their management, can mitigate or contribute to GHG emissions. Litter and soil organic matter (SOM) are two of the major carbon pools required for reporting under LULUCF. In this study, stocks of SOM and litter were recorded along a chronosequence of Sitka spruce (Picea sitchensis (Bong.) Carr.) on wet mineral gley soil. Over a 47-year period, the rate of soil carbon sequestration was found to be 1 .83 t C ha−1 yr−1 . Soil microbial biomass was used to estimate highly active SOM. The mineral soils were also fractionated in a density separation procedure to identify light and heavy SOM pools. These estimates can now be used to model carbon budgets of this most common soil type currently under forestry in Ireland.The Irish National Council for Forest Research and Development provided funding for this work as part of the CARBiFOR research project

Characterisation of dairy soiled water in a survey of 60 Irish dairy farms

peer-reviewedDairy farming in Ireland generates an effluent known as dairy soiled water (DSW), which consists of a relatively dilute mixture of cow faeces, urine, spilt milk and detergents that is typically applied to grassland. However, relatively little is known about the volumes generated, nutrient content and management factors that influence volume and concentration. Sixty dairy farms that had a separate storage tank for storing DSW were selected for this study. The spatial distribution of the farms reflected the spatial distribution of dairy cows across the 26 counties of the Republic of Ireland, with each farm representing between 10,000 and 20,000 dairy cows. Samples were analysed for biochemical oxygen demand (BOD), ammonium N (NH4-N), total nitrogen (TN), potassium (K), phosphorus (molybdate-reactive and total) (MRP and TP) and dry matter (DM) content. Management characteristics and parlour properties were quantified. Factors influencing volume and concentration of DSW were determined using mixed model multiple regression analysis. On average, 9784 l (standard error 209 l) of DSW, including rainfall, was produced cow−1 year−1 and this contained significant quantities of total N, P and K (587, 80 and 568 mg l−1, respectively). A typical Irish dairy farm stocked at 1.9 cows ha−1 could therefore supply approximately 13, 2 and 12 kg ha−1 of total N, P and K, respectively, across the farm, annually to meet some of the nutrient requirements for herbage production and potentially replace some of the synthetic fertilizer use. Seventy one percent of samples were within the regulated concentration limits of soiled water for BOD (<2500 mg l−1), rising to 87% during the closed period for slurry spreading (mid October to mid-late January), while 81% were within the concentration limits for DM (<1% DM), rising to 94% during the closed period. The efficiency of a milking parlour (cows per unit, time taken) plays a key role in determining the volume of DSW generated. This, in turn, also influences the concentration of nutrients and other chemicals. Large variability was found in nutrient concentrations and this presents a challenge for effective nutrient management to maximise the fertilizer replacement value of DSW

USING BIRD STRIKE DATA TO MONITOR BIRD-HAZARD CONTROL

An effective definition of a bird strike is the basis for quantifying the scale of bird hazard problems. Here we present a working definition of a bird strike, which in turn forms the basis of an analysis of 32 years’ data collected at Dublin Airport, Ireland. A variety of datasets are analysed including the number of bird strikes per ten thousand aircraft movements, the mass of the bird species being struck, the time of year at which bird strikes occur and the dimensions of the aircraft utilising the airfield. In addition, we have analysed the mean number of strikes per year and the mean number of birds struck per bird strike. Following a very serious incident involving a Boeing 737-200 which struck a flock of gulls in the mid -1980’s, a new regime of control measures was put in place. Therefore our study permits us to evaluate the effectiveness of this management programme. The results suggest that the most significant impact of control measures is to reduce the number of birds being struck per bird strike

The effects of earthworm functional group diversity on earthworm community structure

A comprehensive understanding of how species/functional group interactions determine population dynamics, community composition and their effect on ecosystem functioning is important. This paper presents data from a mesocosm experiment, based on the simplex design, to examine the effect of interactions between earthworm functional groups, food supply and initial overall biomass on community structure. All communities containing anéciques moved towards domination by anéciques. The survival of anéciques remained constant irrespective of initial conditions, with no effect of initial community structure, food supply or initial biomass. The proportional biomass of epigées increased when they were placed in communities dominated by anéciques. Initial overall biomass had a significant effect on the survival of endogées, with increased survival at low biomass. Juvenile production was significantly increased in communities that contained a higher initial abundance of epigées. The anéciques had significantly increased production of juveniles at lower levels of initial biomass. Overall, earthworm functional group diversity had an idiosyncratic effect on earthworm assemblage structure

Mites (Oribatida and Mesostigmata) and vegetation as complementary bioindicators in peatlands

Vegetation is widely used in the assessment of the quality of peatlands, while the invertebrate fauna of peatlands is relatively poorly studied. We compared the bioindicator values of vegetation with two arthropod groups widespread in peatlands, saprophagous Oribatida (Acariformes) and predatory Mesostigmata (Parasitiformes) mites. Samples were collected from ecotones at the edges of peatland ponds in Poland, including four in near-natural condition (i.e., peatlands unaffected by human activity) and three in previously disturbed but now recovering peatlands. A set of abiotic parameters was measured at each site: pond area, mean annual temperature, annual precipitation, and water parameters (pH, conductivity, colour, total nitrogen, phosphorus, calcium, and organic carbon). Overall, 63,635 specimens of Oribatida and 448 of Mesostigmata were recovered in the sampling. Species richness of Oribatida (56 species) was higher than that of flora (46) and Mesostigmata (15). Vegetation was significantly associated with annual precipitation in the years 1998–2007 which accounted for 29.1 % of the variation in vegetation communities. Oribatida variability was significantly associated with the content of organic carbon in water accounting for 32.4 % of variation. In contrast, variation in the Mesostigmata was not significantly associated with any of the abiotic parameters. Vegetation at ponds in previously disturbed and now recovering peatlands had higher bush cover than at near-natural ponds and the pond in the cutaway peat had lowest moss cover and the highest number of associate species (i.e., species with wide tolerance not characteristic of the certain community). Mite communities did not differ consistently between near-natural and recovering peatlands. Sphagnum divinum Flatberg et Hassel was recorded from Poland for the first time.publishedVersio

Organic matter composition and the protist and nematode communities around anecic earthworm burrows

By living in permanent burrows and incorporating organic detritus from the soil surface, anecic earthworms contribute to soil heterogeneity, but their impact is still under-studied in natural field conditions. We investigated the effects of the anecic earthworm Lumbricus centralis on fresh carbon (C) incorporation, soil organic matter composition, protists, and nematodes of a Cambisol under grassland. We used plant material labelled with stable isotope tracers to detect fresh C input around earthworm-occupied burrows or around burrows from which the earthworm had been removed. After 50 days, we sampled soil (0–10 cm depth) in concentric layers around the burrows, distinguishing between drilosphere (0–8 mm) and bulk soil (50–75 mm). L. centralis effectively incorporated fresh C into the drilosphere, and this shifted soil organic matter amount and chemistry: total soil sugar content was increased compared to unoccupied drilosphere and bulk soil, and the contribution of plant-derived sugars to soil organic matter was enhanced. Earthworms also shifted the spatial distribution of soil C towards the drilosphere. The total abundance of protists and nematodes was only slightly higher in earthworm-occupied drilosphere, but strong positive effects were found for some protist clades (e.g. Stenamoeba spp.). Additional data for the co-occurring anecic earthworm species Aporrectodea longa showed that it incorporated fresh C less than L. centralis, suggesting that the two species may have different effects on soil C distribution and organic matter quality

The guinea pig ileum lacks the direct, high-potency, M2-muscarinic, contractile mechanism characteristic of the mouse ileum

We explored whether the M2 muscarinic receptor in the guinea pig ileum elicits a highly potent, direct-contractile response, like that from the M3 muscarinic receptor knockout mouse. First, we characterized the irreversible receptor-blocking activity of 4-DAMP mustard in ileum from muscarinic receptor knockout mice to verify its M3 selectivity. Then, we used 4-DAMP mustard to inactivate M3 responses in the guinea pig ileum to attempt to reveal direct, M2 receptor-mediated contractions. The muscarinic agonist, oxotremorine-M, elicited potent contractions in ileum from wild-type, M2 receptor knockout, and M3 receptor knockout mice characterized by negative log EC50 (pEC50) values ± SEM of 6.75 ± 0.03, 6.26 ± 0.05, and 6.99 ± 0.08, respectively. The corresponding Emax values in wild-type and M2 receptor knockout mice were approximately the same, but that in the M3 receptor knockout mouse was only 36% of wild type. Following 4-DAMP mustard treatment, the concentration–response curve of oxotremorine-M in wild-type ileum resembled that of the M3 knockout mouse in terms of its pEC50, Emax, and inhibition by selective muscarinic antagonists. Thus, 4-DAMP mustard treatment appears to inactivate M3 responses selectively and renders the muscarinic contractile behavior of the wild-type ileum similar to that of the M3 knockout mouse. Following 4-DAMP mustard treatment, the contractile response of the guinea pig ileum to oxotremorine-M exhibited low potency and a competitive-antagonism profile consistent with an M3 response. The guinea pig ileum, therefore, lacks a direct, highly potent, M2-contractile component but may have a direct, lower potency M2 component

Effect of early vasopressin vs norepinephrine on kidney failure in patients with septic shock. The VANISH Randomized Clinical Trial

IMPORTANCE: Norepinephrine is currently recommended as the first-line vasopressor in septic shock; however, early vasopressin use has been proposed as an alternative. OBJECTIVE: To compare the effect of early vasopressin vs norepinephrine on kidney failure in patients with septic shock. DESIGN, SETTING, AND PARTICIPANTS: A factorial (2×2), double-blind, randomized clinical trial conducted in 18 general adult intensive care units in the United Kingdom between February 2013 and May 2015, enrolling adult patients who had septic shock requiring vasopressors despite fluid resuscitation within a maximum of 6 hours after the onset of shock. INTERVENTIONS: Patients were randomly allocated to vasopressin (titrated up to 0.06 U/min) and hydrocortisone (n = 101), vasopressin and placebo (n = 104), norepinephrine and hydrocortisone (n = 101), or norepinephrine and placebo (n = 103). MAIN OUTCOMES AND MEASURES: The primary outcome was kidney failure-free days during the 28-day period after randomization, measured as (1) the proportion of patients who never developed kidney failure and (2) median number of days alive and free of kidney failure for patients who did not survive, who experienced kidney failure, or both. Rates of renal replacement therapy, mortality, and serious adverse events were secondary outcomes. RESULTS: A total of 409 patients (median age, 66 years; men, 58.2%) were included in the study, with a median time to study drug administration of 3.5 hours after diagnosis of shock. The number of survivors who never developed kidney failure was 94 of 165 patients (57.0%) in the vasopressin group and 93 of 157 patients (59.2%) in the norepinephrine group (difference, -2.3% [95% CI, -13.0% to 8.5%]). The median number of kidney failure-free days for patients who did not survive, who experienced kidney failure, or both was 9 days (interquartile range [IQR], 1 to -24) in the vasopressin group and 13 days (IQR, 1 to -25) in the norepinephrine group (difference, -4 days [95% CI, -11 to 5]). There was less use of renal replacement therapy in the vasopressin group than in the norepinephrine group (25.4% for vasopressin vs 35.3% for norepinephrine; difference, -9.9% [95% CI, -19.3% to -0.6%]). There was no significant difference in mortality rates between groups. In total, 22 of 205 patients (10.7%) had a serious adverse event in the vasopressin group vs 17 of 204 patients (8.3%) in the norepinephrine group (difference, 2.5% [95% CI, -3.3% to 8.2%]). CONCLUSIONS AND RELEVANCE: Among adults with septic shock, the early use of vasopressin compared with norepinephrine did not improve the number of kidney failure-free days. Although these findings do not support the use of vasopressin to replace norepinephrine as initial treatment in this situation, the confidence interval included a potential clinically important benefit for vasopressin, and larger trials may be warranted to assess this further. TRIAL REGISTRATION: clinicaltrials.gov Identifier: ISRCTN 20769191

Random mutagenesis of the prokaryotic peptide transporter YdgR identifies potential periplasmic gating residues

The peptide transporter (PTR) family represents a group of proton-coupled secondary transporters responsible for bulk uptake of amino acids in the form of di- and tripeptides, an essential process employed across species ranging from bacteria to humans. To identify amino acids critical for peptide transport in a prokaryotic PTR member, we have screened a library of mutants of the Escherichia coli peptide transporter YdgR using a high-throughput substrate uptake assay.Wehave identified 35 single point mutations that result in a full or partial loss of transport activity. Additional analysis, including homology modeling based on the crystal structure of the Shewanella oneidensis peptide transporter PepT so, identifies Glu 56 and Arg 305 as potential periplasmic gating residues. In addition to providing new insights into transport by members of the PTR family, these mutants provide valuable tools for further study of the mechanism of peptide transport