Assessing the genetic and pathogenic variability of Pyrenophora teres f. maculata (spot form net blotch of barley) and its ability to overcome currently-used sources of resistance on the Canadian prairies

Non-Peer ReviewedEighty two isolates of the fungus Pyrenophora teres f. maculata, causal agent of spot form net blotch (SFNB) of barley, were collected across the Canadian prairies. Following genetic analysis using 13 microsatellite DNA markers, 27 isolates were selected to assess the degree of pathogenic variation in the fungus. Pathogenic variability was evaluated by inoculating isolates onto 11 barley genotypes as differential hosts at the seedling stage. One week following inoculation, the second and third leaves of each plant were rated on to a 1–9 disease severity scale, and plants with scores of 1–3 and >3 were scored as resistant and susceptible, respectively. The entire experiment was repeated. Cluster analysis revealed 13 distinct pathotype groups (virulence patterns) among the 27 representative isolates. Disease severity ratings ranged from 2.2 to 6.1 with a mean of 4.6. To assess the risk of resistance breakdown, the resistance of four barley cultivars (‘AAC Synergy’, ‘CDC Meredith’, ‘Cerveza’ and ‘Major’), which had been previously identified as resistant to SFNB on the Canadian prairies, was evaluated at the seedling stage against six isolates of P. teres f. maculata representing four different pathotypes. The resistance in ‘CDC Meredith’ was clearly overcome by all isolates tested, while ‘AAC Synergy’, ‘Cerveza’ and ‘Major’ still exhibited resistance against all of the pathotypes. The identification of fungal isolates virulent on ‘CDC Meredith’ suggests that producers should avoid growing the same resistant barley variety in short rotation, and avoid relying on resistance as the sole approach to disease management. Judicious use of fungicides, coupled with rotations of at least two years between barley crops and diversity in the barley varieties grown, will promote effective and sustainable management of spot form net blotch

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

Background: Pyrenophora teres f. teres is a necrotrophic fungal pathogen and the cause of one of barley’s most important diseases, net form of net blotch. Here we report the first genome assembly for this species based solely on short Solexa sequencing reads of isolate 0-1. The assembly was validated by comparison to BAC sequences, ESTs, orthologous genes and by PCR, and complemented by cytogenetic karyotyping and the first genome-wide genetic map for P. teres f. teres. Results: The total assembly was 41.95 Mbp and contains 11,799 gene models of 50 amino acids or more. Comparison against two sequenced BACs showed that complex regions with a high GC content assembled effectively. Electrophoretic karyotyping showed distinct chromosomal polymorphisms between isolates 0-1 and 15A, and cytological karyotyping confirmed the presence of at least nine chromosomes. The genetic map spans 2477.7 cM and is composed of 243 markers in 25 linkage groups, and incorporates SSR markers developed from the assembly. Among predicted genes, non-ribosomal peptide synthetases and efflux pumps in particular appear to have undergone a P. teres f. teres-specific expansion of non-orthologous gene families. Conclusions: This study demonstrates that paired-end Solexa sequencing can successfully capture coding regions of a filamentous fungal genome. The assembly contains a plethora of predicted genes that have been implicated in a necrotrophic lifestyle and pathogenicity and presents a significant resource for examining the bases for P. teres f. teres pathogenicity

Fusarium head blight of cereals in western Canada – a 10-year retrospective

Non-Peer ReviewedFusarium head blight (FHB), a disease of wheat and barley, has been a problem for producers and the agricultural industry in Manitoba for the past 10 years. During this time the disease has occasionally been reported from eastern Saskatchewan, but until 1996, FHB was largely a novelty or of minor concern in this province. A concerted effort to study FHB under prairie conditions was begun in 1988 at the Cereal Research Centre (CRC), Agriculture and Agri-Food Canada in Winnipeg MB. This work is ongoing. For this presentation the findings of this research, done by a multi disciplinary team of scientists and technicians, will be summarized. The intent is to provide a brief overview and to supply literature references for information already published. These findings have relevance to a problem that may become more acute in Saskatchewan, and should provide agronomists, extension personnel, plant pathologists and producers with insights and a ‘road map’ on which to base recommendations and future studies

Mapping of adult plant resistance to net form of net blotch in three Australian barley populations

Net form of net blotch (NFNB), caused by Pyrenophora teres Drechs. f. teres Smedeg., is a serious disease problem for the barley industry in Australia and other parts of the world. Three doubledhaploid barley populations, Alexis/Sloop, WI875-1/Alexis, and Arapiles/Franklin, were used to identify genes conferring adult plant resistance to NFNB in field trials. Quantitative trait loci (QTLs) identified were specific for adult plant resistance because seedlings of the parental lines were susceptible to the NFNB isolates used in this study. QTLs were identified on chromosomes 2H, 3H, 4H, and 7H in both the Alexis/Sloop and WI2875-1/Alexis populations and on chromosomes 1H, 2H, and 7H in the Arapiles/Franklin population. Using QTL Network, epistatic interactions were identified between loci on chromosomes 3H and 6H in the Alexis/Sloop population, between 2H and 4H in the WI2875-1/Alexis population, and between 5H and 7H in the Arapiles/Franklin population. Comparisons with earlier studies of NFNB resistance indicate the pathotype nomenclature and differential testing

Progress in assessing the impact of Fusarium head blight on oat in western Canada and screening of avena germplasm for resistance

Fusarium head blight (FHB) of oat in western Canada was determined to be caused by a complex of Fusarium species, the composition and proportions of which varied considerably among years, and between Manitoba and Saskatchewan, the two main oat production regions (provinces) in western Canada. The levels of deoxynivalenol (DON), associated with Fusarium graminearum infection, were considerably higher in oat than in wheat and especially in barley, when levels of DON were compared to those of F. graminearum on seed, suggesting that oat may stimulate production of the mycotoxin by this causal species during the infection process, compared to that in other cereals. Testing of oat cultivars and lines for reaction to FHB indicated that while differences existed, these were relatively small. ‘Naked’ oats, in general, were more resistant. Several of the exotic oat accessions tested appeared to have superior levels of resistance and these are being used as parents in crosses to improve resistance in adapted, high quality oats