Multi-scale records of reef development and condition provide context for contemporary changes on inshore reefs

Comparisons between historical and contemporary photographs of coral reef flats from the inshore Great Barrier Reef (GBR) have been cited by various authors and agencies as evidence of reef degradation since European settlement and have been presented as proof of widespread reef decline. The diminished condition is inferred from reduced live coral cover and structural diversity depicted in the contemporary photographs. Anthropogenic causes for this deterioration are most often proposed, usually because it is argued to have coincided with modifications to coastal catchments by European settlers. However, changes in reef condition inferred from photographic comparisons have rarely been verified against quantitative assessments of reef geomorphic state or current reef status. Photographs taken in the late 1800s of the reef flat at Stone Island, located in Edgecumbe Bay in the inshore central GBR, have been compared by others with more recent images to interpret significant reductions in coral cover and diversity over the past 120 or so years. We examined the internal structure of fringing reefs at two locations on Stone Island by collecting 14 percussion cores across the reef flats. Sedimentological analyses coupled with uranium-thorium dating allowed for the reconstruction of reef development over the past ~ 7000 years. Both reefs at Stone Island initiated prior to 7000 calendar years before present (yBP, where present is 1950 AD) and both reef flats were almost entirely emplaced by 4000 yBP. Surveys of the benthic ecology of reefs at Stone Island and at Middle Island, also in Edgecumbe Bay, indicate that coral cover and diversity across reef flats and slopes was patchy and varied spatially within each location and throughout the region. Live coral cover on the Middle Island reef flat reached an average (± 1σ standard deviation) of 63.1 ± 20.2%. This was much higher than the live coral cover on Stone Island reef flats, where only a few small living coral colonies were recorded. We evaluate the use of photographic records from Stone Island to depict regional changes in reef condition by comparing the trends in reef condition determined from photographic records with underlying reef geomorphic state reconstructed from reef cores. We conclude that inferred changes in reef condition at Stone Island are localised and should not be used as evidence of widespread regional decline on the GBR

Is oxygen limitation in warming waters a valid mechanism to explain decreased body sizes in aquatic ectotherms?

The authors would like to acknowledge funding from Australian Research Council (grant No. DP170104240) and the Kone Foundation (to AA), Horizon 2020 European research projects ClimeFish (grant No. 677039) (to ARB) and Australian Academy of Science (to JRM)Peer reviewedPostprintPostprin

Testing the precision and accuracy of the U-Th chronometer for dating coral mortality events in the last 100 years

To assist with our understanding of reef dynamics prior to modern monitoring programs and recent observations of coral decline, a robust dating technique is required to place coral mortality events and historical changes in community structure in an accurate chronological framework. In this study we adopted a refined Uranium-Thorium (U-Th) isotope measurement protocol using multi-collector inductively coupled plasma mass spectrometry (MC-ICP-MS) for rapid, precise and accurate age determination of a large branching Acropora coral death assemblage from an inshore reef of the Great Barrier Reef (GBR) where the timing of mortality is independently constrained. To achieve this, we developed a vigorous sample cleaning/treatment procedure to remove most non-carbonate detritus from the coral skeleton, and a correction scheme that accounts for initial 230Th sources in the dead coral skeletons. Using this method, the 230Th ages (with 2σ errors of 1-5 years) from 41 individual dead Acropora branches precisely bracket the timing of a documented ~100% loss of hard coral cover, primarily Acropora, that was caused by increased sea-surface temperatures during the 1997-1998 mass bleaching event. Our results demonstrate the applicability of U-Th dating in accurately determining the timing of previous disturbance events in coral reef communities, as well as identifying potential drivers. This approach provides a powerful tool to researchers and managers in assessing the current status of reefs and identifying areas vulnerable to degradation where long-term monitoring data are absent or too recent

High-precision U-Th dating of storm-transported coral blocks on Frankland Islands, northern Great Barrier Reef, Australia

High-energy storm-transported coral blocks are widespread on the reef flats of the Great Barrier Reef (GBR), Australia, and have the potential to be used as proxies for reconstructing past storm/cyclone events prior to historical or instrumental records. In this study, samples from 42 individual transported coral blocks were collected from the inshore Frankland Islands, northern GBR for high-precision MC-ICPMS U-Th dating with their surface mortality ages recording the timing of individual storms or cyclones responsible for their uplift from their original growth position. The dated mortality ages were found to match well with known historical storm/cyclone events in the last century, with 80% of them falling within episodes of increased storm activity (1910-1915, 1945-1950, 1955-1960, 1975-1990, 1995-2000. AD) captured by instrumental/historic records, confirming that transported coral blocks on inshore reefs can be used as proxies for past storm/cyclone occurrences. Using this approach, this study also identified 17 additional storm/cyclone events that occurred before European settlement in the 1850s, including three oldest events at 758.4 ± 3.7, 777.9 ± 4.9, and 985.2 ± 4.8 AD, respectively. Our results, despite still preliminary, suggest that the storm/cyclone activity in this region tends to broadly correlate with the positive modes of the Pacific Decadal Oscillation (PDO) during the last millennium. In addition, there appears to be a decreasing age trend from the shore to the reef edge (from 758.4 ± 3.7 AD to 1988.3 ± 1.6 AD), which can be attributed to sea-level fall and/or reef/island progradation over the last 2000 years

A systematic review of tests for lymph node status in primary endometrial cancer

<p>Abstract</p> <p>Background</p> <p>The lymph node status of a patient is a key determinate in staging, prognosis and adjuvant treatment of endometrial cancer. Despite this, the potential additional morbidity associated with lymphadenectomy makes its role controversial. This study systematically reviews the accuracy literature on sentinel node biopsy; ultra sound scanning, magnetic resonance imaging (MRI) and computer tomography (CT) for determining lymph node status in endometrial cancer.</p> <p>Methods</p> <p>Relevant articles were identified form MEDLINE (1966–2006), EMBASE (1980–2006), MEDION, the Cochrane library, hand searching of reference lists from primary articles and reviews, conference abstracts and contact with experts in the field. The review included 18 relevant primary studies (693 women). Data was extracted for study characteristics and quality. Bivariate random-effect model meta-analysis was used to estimate diagnostic accuracy of the various index tests.</p> <p>Results</p> <p>MRI (pooled positive LR 26.7, 95% CI 10.6 – 67.6 and negative LR 0.29 95% CI 0.17 – 0.49) and successful sentinel node biopsy (pooled positive LR 18.9 95% CI 6.7 – 53.2 and negative LR 0.22, 95% CI 0.1 – 0.48) were the most accurate tests. CT was not as accurate a test (pooled positive LR 3.8, 95% CI 2.0 – 7.3 and negative LR of 0.62, 95% CI 0.45 – 0.86. There was only one study that reported the use of ultrasound scanning.</p> <p>Conclusion</p> <p>MRI and sentinel node biopsy have shown similar diagnostic accuracy in confirming lymph node status among women with primary endometrial cancer than CT scanning, although the comparisons made are indirect and hence subject to bias. MRI should be used in preference, in light of the ASTEC trial, because of its non invasive nature.</p

Novel suppressors of α-synuclein toxicity identified using yeast

The mechanism by which the Parkinson’s disease-related protein α-synuclein (α-syn) causes neurodegeneration has not been elucidated. To determine the genes that protect cells from α-syn, we used a genetic screen to identify suppressors of the super sensitivity of the yeast Saccharomyces cerevisiae expressing α-syn to killing by hydrogen peroxide. Forty genes in ubiquitin-dependent protein catabolism, protein biosynthesis, vesicle trafficking and the response to stress were identified. Five of the forty genes—ENT3, IDP3, JEM1, ARG2 and HSP82—ranked highest in their ability to block α-syn-induced reactive oxygen species accumulation, and these five genes were characterized in more detail. The deletion of any of these five genes enhanced the toxicity of α-syn as judged by growth defects compared with wild-type cells expressing α-syn, which indicates that these genes protect cells from α-syn. Strikingly, four of the five genes are specific for α-syn in that they fail to protect cells from the toxicity of the two inherited mutants A30P or A53T. This finding suggests that α-syn causes toxicity to cells through a different pathway than these two inherited mutants. Lastly, overexpression of Ent3p, which is a clathrin adapter protein involved in protein transport between the Golgi and the vacuole, causes α-syn to redistribute from the plasma membrane into cytoplasmic vesicular structures. Our interpretation is that Ent3p mediates the transport of α-syn to the vacuole for proteolytic degradation. A similar clathrin adaptor protein, epsinR, exists in humans

The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira crunogena XCL-2

Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteobacterium has a single chromosome (2,427,734 base pairs), and its genome illustrates many of the adaptations that have enabled it to thrive at vents globally. It has 14 methyl-accepting chemotaxis protein genes, including four that may assist in positioning it in the redoxcline. A relative abundance of coding sequences (CDSs) encoding regulatory proteins likely control the expression of genes encoding carboxysomes, multiple dissolved inorganic nitrogen and phosphate transporters, as well as a phosphonate operon, which provide this species with a variety of options for acquiring these substrates from the environment. Thiom. crunogena XCL-2 is unusual among obligate sulfur-oxidizing bacteria in relying on the Sox system for the oxidation of reduced sulfur compounds. The genome has characteristics consistent with an obligately chemolithoautotrophic lifestyle, including few transporters predicted to have organic allocrits, and Calvin-Benson-Bassham cycle CDSs scattered throughout the genome