The statistics of particle velocities in dense granular flows

We present measurements of the particle velocity distribution in the flow of granular material through vertical channels. Our study is confined to dense, slow flows where the material shears like a fluid only in thin layers adjacent to the walls, while a large core moves without continuous deformation, like a solid. We find the velocity distribution to be non-Gaussian, anisotropic, and to follow a power law at large velocities. Remarkably, the distribution is identical in the fluid-like and solid-like regions. The velocity variance is maximum at the core, defying predictions of hydrodynamic theories. We show evidence of spatially correlated motion, and propose a mechanism for the generation of fluctuational motion in the absence of shear.Comment: Submitted to Phys. Rev. Let

Evidence of Sulfur Non-Innocence in [CoII(dithiacyclam)]2+-Mediated Catalytic Oxygen Reduction Reactions

In many metalloenzymes, sulfur-containing ligands participate in catalytic processes, mainly via the involvement in electron transfer reactions. In a biomimetic approach, we now demonstrate the implication of S-ligation in cobalt mediated oxygen reduction reactions (ORR). A comparative study between the catalytic ORR capabilities of the four-nitrogen bound [Co(cyclam)]2+ (1; cyclam=1,5,8,11-tetraaza-cyclotetradecane) and the S-containing analog [Co(S2N2-cyclam)]2+ (2; S2N2-cyclam=1,8-dithia-5,11-diaza-cyclotetradecane) reveals improved catalytic performance once the chalcogen is introduced in the Co coordination sphere. Trapping and characterization of the intermediates formed upon dioxygen activation at the CoII centers in 1 and 2 point to the involvement of sulfur in the O2 reduction process as the key for the improved catalytic ORR capabilities of 2

Shearing of loose granular materials: A statistical mesoscopic model

A two-dimensional lattice model for the formation and evolution of shear bands in granular media is proposed. Each lattice site is assigned a random variable which reflects the local density. At every time step, the strain is localized along a single shear-band which is a spanning path on the lattice chosen through an extremum condition. The dynamics consists of randomly changing the `density' of the sites only along the shear band, and then repeating the procedure of locating the extremal path and changing it. Starting from an initially uncorrelated density field, it is found that this dynamics leads to a slow compaction along with a non-trivial patterning of the system, with high density regions forming which shelter long-lived low-density valleys. Further, as a result of these large density fluctuations, the shear band which was initially equally likely to be found anywhere on the lattice, gets progressively trapped for longer and longer periods of time. This state is however meta-stable, and the system continues to evolve slowly in a manner reminiscent of glassy dynamics. Several quantities have been studied numerically which support this picture and elucidate the unusual system-size effects at play.Comment: 11 pages, 15 figures revtex, submitted to PRE, See also: cond-mat/020921

A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle.

Biological carbon fixation is a key step in the global carbon cycle that regulates the atmosphere's composition while producing the food we eat and the fuels we burn. Approximately one-third of global carbon fixation occurs in an overlooked algal organelle called the pyrenoid. The pyrenoid contains the CO2-fixing enzyme Rubisco and enhances carbon fixation by supplying Rubisco with a high concentration of CO2 Since the discovery of the pyrenoid more that 130 y ago, the molecular structure and biogenesis of this ecologically fundamental organelle have remained enigmatic. Here we use the model green alga Chlamydomonas reinhardtii to discover that a low-complexity repeat protein, Essential Pyrenoid Component 1 (EPYC1), links Rubisco to form the pyrenoid. We find that EPYC1 is of comparable abundance to Rubisco and colocalizes with Rubisco throughout the pyrenoid. We show that EPYC1 is essential for normal pyrenoid size, number, morphology, Rubisco content, and efficient carbon fixation at low CO2 We explain the central role of EPYC1 in pyrenoid biogenesis by the finding that EPYC1 binds Rubisco to form the pyrenoid matrix. We propose two models in which EPYC1's four repeats could produce the observed lattice arrangement of Rubisco in the Chlamydomonas pyrenoid. Our results suggest a surprisingly simple molecular mechanism for how Rubisco can be packaged to form the pyrenoid matrix, potentially explaining how Rubisco packaging into a pyrenoid could have evolved across a broad range of photosynthetic eukaryotes through convergent evolution. In addition, our findings represent a key step toward engineering a pyrenoid into crops to enhance their carbon fixation efficiency

Overexpression of Sedoheptulose-1,7-Bisphosphatase Enhances Photosynthesis in Chlamydomonas reinhardtii and Has No Effect on the Abundance of Other Calvin-Benson Cycle Enzymes

The productivity of plants and microalgae needs to be increased to feed the growing world population and to promote the development of a low-carbon economy. This goal can be achieved by improving photosynthesis via genetic engineering. In this study, we have employed the Modular Cloning strategy to overexpress the Calvin-Benson cycle (CBC) enzyme sedoheptulose-1,7-bisphosphatase (SBP1) up to threefold in the unicellular green alga Chlamydomonas reinhardtii. The protein derived from the nuclear transgene represented ∼0.3 of total cell protein. Photosynthetic rate and growth were significantly increased in SBP1-overexpressing lines under high-light and elevated CO2 conditions. Absolute quantification of the abundance of all other CBC enzymes by the QconCAT approach revealed no consistent differences between SBP1-overexpressing lines and the recipient strain. This analysis also revealed that the 11 CBC enzymes represent 11.9 of total cell protein in Chlamydomonas. Here, the range of concentrations of CBC enzymes turned out to be much larger than estimated earlier, with a 128-fold difference between the most abundant CBC protein (rbcL) and the least abundant (triose phosphate isomerase). Accordingly, the concentrations of the CBC intermediates are often but not always higher than the binding site concentrations of the enzymes for which they act as substrates. The enzymes with highest substrate to binding site ratios might represent good candidates for overexpression in subsequent engineering steps

Evolving Viscous Anisotropy in the Upper Mantle and Its Geodynamic Implications

Asthenospheric shear causes some minerals, particularly olivine, to develop anisotropic textures that can be detected seismically. In laboratory experiments, these textures are also associated with anisotropic viscous behavior, which should be important for geodynamic processes. To examine the role of anisotropic viscosity for asthenospheric deformation, we developed a numerical model of coupled anisotropic texture development and anisotropic viscosity, both calibrated with laboratory measurements of olivine aggregates. This model characterizes the time‐dependent coupling between large‐scale formation of lattice‐preferred orientation (i.e., texture) and changes in asthenospheric viscosity for a series of simple deformation paths that represent upper mantle geodynamic processes. We find that texture development beneath a moving surface plate tends to align the a axes of olivine into the plate motion direction, which weakens the effective viscosity in this direction and increases plate velocity for a given driving force. Our models indicate that the effective viscosity increases for shear in the horizontal direction perpendicular to the a axes. This increase should slow plate motions and new texture development in this perpendicular direction and could impede changes to the plate motion direction for tens of millions of years. However, the same well‐developed asthenospheric texture may foster subduction initiation perpendicular to the plate motion and deformations related to transform faults, as shearing on vertical planes seems to be favored across a sublithospheric olivine texture. These end‐member cases examining shear deformation in the presence of a well‐formed asthenospheric texture illustrate the importance of the mean olivine orientation, and its associated viscous anisotropy, for a variety of geodynamic processes