248 research outputs found
Identification and differentiation of Trichophyton rubrum clinical isolates using PCR-RFLP and RAPD methods
Trichophyton rubrum represents the most frequently isolated causative agent of superficial dermatophyte infections. Several genotyping methods have recently been introduced to improve the delineation between pathogenic fungi at both the species and the strain levels. The purpose of this study was to apply selected DNA fingerprinting methods to the identification and strain discrimination of T. rubrum clinical isolates. Fifty-seven isolates from as many tinea patients were subjected to species identification by polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) analysis and strain differentiation using a randomly amplified polymorphic DNA (RAPD) method, with two primers designated 1 and 6. Using PCR-RFLP, 55 of the isolates studied were confirmed to be T. rubrum. Among those, a total of 40 and five distinct profiles were obtained by RAPD with primers 1 and 6, respectively. The combination of profiles from both RAPD assays resulted in 47 genotypes and an overall genotypic diversity rate of 85.4%. A dendrogram analysis performed on the profiles generated by RAPD with primer 1 showed most of the isolates (87.3%) to be genetically related. PCR-RFLP serves as a rapid and reliable method for the identification of T. rubrum species, while the RAPD analysis is rather a disadvantageous tool for T. rubrum strain typing
Search for non-relativistic Magnetic Monopoles with IceCube
The IceCube Neutrino Observatory is a large Cherenkov detector instrumenting
of Antarctic ice. The detector can be used to search for
signatures of particle physics beyond the Standard Model. Here, we describe the
search for non-relativistic, magnetic monopoles as remnants of the GUT (Grand
Unified Theory) era shortly after the Big Bang. These monopoles may catalyze
the decay of nucleons via the Rubakov-Callan effect with a cross section
suggested to be in the range of to
. In IceCube, the Cherenkov light from nucleon decays
along the monopole trajectory would produce a characteristic hit pattern. This
paper presents the results of an analysis of first data taken from May 2011
until May 2012 with a dedicated slow-particle trigger for DeepCore, a
subdetector of IceCube. A second analysis provides better sensitivity for the
brightest non-relativistic monopoles using data taken from May 2009 until May
2010. In both analyses no monopole signal was observed. For catalysis cross
sections of the flux of non-relativistic
GUT monopoles is constrained up to a level of at a 90% confidence level,
which is three orders of magnitude below the Parker bound. The limits assume a
dominant decay of the proton into a positron and a neutral pion. These results
improve the current best experimental limits by one to two orders of magnitude,
for a wide range of assumed speeds and catalysis cross sections.Comment: 20 pages, 20 figure
Determining neutrino oscillation parameters from atmospheric muon neutrino disappearance with three years of IceCube DeepCore data
We present a measurement of neutrino oscillations via atmospheric muon
neutrino disappearance with three years of data of the completed IceCube
neutrino detector. DeepCore, a region of denser instrumentation, enables the
detection and reconstruction of atmospheric muon neutrinos between 10 GeV and
100 GeV, where a strong disappearance signal is expected. The detector volume
surrounding DeepCore is used as a veto region to suppress the atmospheric muon
background. Neutrino events are selected where the detected Cherenkov photons
of the secondary particles minimally scatter, and the neutrino energy and
arrival direction are reconstructed. Both variables are used to obtain the
neutrino oscillation parameters from the data, with the best fit given by
and
(normal mass hierarchy assumed). The
results are compatible and comparable in precision to those of dedicated
oscillation experiments.Comment: 10 pages, 7 figure
Observation of High-Energy Astrophysical Neutrinos in Three Years of IceCube Data
A search for high-energy neutrinos interacting within the IceCube detector
between 2010 and 2012 provided the first evidence for a high-energy neutrino
flux of extraterrestrial origin. Results from an analysis using the same
methods with a third year (2012-2013) of data from the complete IceCube
detector are consistent with the previously reported astrophysical flux in the
100 TeV - PeV range at the level of per flavor and reject a
purely atmospheric explanation for the combined 3-year data at .
The data are consistent with expectations for equal fluxes of all three
neutrino flavors and with isotropic arrival directions, suggesting either
numerous or spatially extended sources. The three-year dataset, with a livetime
of 988 days, contains a total of 37 neutrino candidate events with deposited
energies ranging from 30 to 2000 TeV. The 2000 TeV event is the highest-energy
neutrino interaction ever observed.Comment: 8 pages, 5 figures. Accepted by PRL. The event catalog, event
displays, and other data tables are included after the final page of the
article. Changed from the initial submission to reflect referee comments,
expanding the section on atmospheric backgrounds, and fixes offsets of up to
0.9 seconds in reported event times. Address correspondence to: J. Feintzeig,
C. Kopper, N. Whitehor
Searches for Extended and Point-like Neutrino Sources with Four Years of IceCube Data
We present results on searches for point-like sources of neutrinos using four
years of IceCube data, including the first year of data from the completed
86-string detector. The total livetime of the combined dataset is 1,373 days.
For an E spectrum the median sensitivity at 90\% C.L. is
TeVcms for energies between 1 TeV1 PeV in the northern
sky and TeVcms for energies between 100
TeV 100 PeV in the southern sky. The sensitivity has improved from both the
additional year of data and the introduction of improved reconstructions
compared to previous publications. In addition, we present the first results
from an all-sky search for extended sources of neutrinos. We update results of
searches for neutrino emission from stacked catalogs of sources, and test five
new catalogs; two of Galactic supernova remnants and three of active galactic
nuclei. In all cases, the data are compatible with the background-only
hypothesis, and upper limits on the flux of muon neutrinos are reported for the
sources considered.Comment: 36 pages, 15 figures. Submitted to the Astrophysical Journa
Determining neutrino oscillation parameters from atmospheric muon neutrino disappearance with three years of IceCube DeepCore data
We present a measurement of neutrino oscillations via atmospheric muon
neutrino disappearance with three years of data of the completed IceCube
neutrino detector. DeepCore, a region of denser instrumentation, enables the
detection and reconstruction of atmospheric muon neutrinos between 10 GeV and
100 GeV, where a strong disappearance signal is expected. The detector volume
surrounding DeepCore is used as a veto region to suppress the atmospheric muon
background. Neutrino events are selected where the detected Cherenkov photons
of the secondary particles minimally scatter, and the neutrino energy and
arrival direction are reconstructed. Both variables are used to obtain the
neutrino oscillation parameters from the data, with the best fit given by
and
(normal mass hierarchy assumed). The
results are compatible and comparable in precision to those of dedicated
oscillation experiments.Comment: 10 pages, 7 figure
Atmospheric and Astrophysical Neutrinos above 1 TeV Interacting in IceCube
The IceCube Neutrino Observatory was designed primarily to search for
high-energy (TeV--PeV) neutrinos produced in distant astrophysical objects. A
search for ~TeV neutrinos interacting inside the instrumented
volume has recently provided evidence for an isotropic flux of such neutrinos.
At lower energies, IceCube collects large numbers of neutrinos from the weak
decays of mesons in cosmic-ray air showers. Here we present the results of a
search for neutrino interactions inside IceCube's instrumented volume between
1~TeV and 1~PeV in 641 days of data taken from 2010--2012, lowering the energy
threshold for neutrinos from the southern sky below 10 TeV for the first time,
far below the threshold of the previous high-energy analysis. Astrophysical
neutrinos remain the dominant component in the southern sky down to 10 TeV.
From these data we derive new constraints on the diffuse astrophysical neutrino
spectrum, , as well as the strongest upper limit yet on
the flux of neutrinos from charmed-meson decay in the atmosphere, 1.52 times
the benchmark theoretical prediction used in previous IceCube results at 90\%
confidence.Comment: 18 pages, 12 figure
The IceCube Neutrino Observatory Part VI: Ice Properties, Reconstruction and Future Developments
Papers on ice properties, reconstruction and future developments submitted to
the 33nd International Cosmic Ray Conference (Rio de Janeiro 2013) by the
IceCube Collaboration.Comment: 28 pages, 38 figures; Papers submitted to the 33nd International
Cosmic Ray Conference, Rio de Janeiro 2013; version 2 corrects errors in the
author lis
Particle identification performance of a straw transition radiation tracker prototype
A 864 channel prototype of an integrated straw tracker and transition radiation detector for tracking and electron identification has been tested with and without magnetic field at the CERN SPS. The rejection against hadrons and converted photons has been measured and the dependence of the rejection power on detector parameters has been investigated. Tracking and hadron rejection were also studied in a high multiplicity environment. The results are compared with Monte-Carlo simulations. Wherever possible, conclusions are drawn concerning the performance of a full-scale detector at the future Large Hadron Collider
The dUTPase Enzyme Is Essential in Mycobacterium smegmatis
Thymidine biosynthesis is essential in all cells. Inhibitors of the enzymes involved in this pathway (e.g. methotrexate) are thus frequently used as cytostatics. Due to its pivotal role in mycobacterial thymidylate synthesis dUTPase, which hydrolyzes dUTP into the dTTP precursor dUMP, has been suggested as a target for new antitubercular agents. All mycobacterial genomes encode dUTPase with a mycobacteria-specific surface loop absent in the human dUTPase. Using Mycobacterium smegmatis as a fast growing model for Mycobacterium tuberculosis, we demonstrate that dUTPase knock-out results in lethality that can be reverted by complementation with wild-type dUTPase. Interestingly, a mutant dUTPase gene lacking the genus-specific loop was unable to complement the knock-out phenotype. We also show that deletion of the mycobacteria-specific loop has no major effect on dUTPase enzymatic properties in vitro and thus a yet to be identified loop-specific function seems to be essential within the bacterial cell context. In addition, here we demonstrated that Mycobacterium tuberculosis dUTPase is fully functional in Mycobacterium smegmatis as it rescues the lethal knock-out phenotype. Our results indicate the potential of dUTPase as a target for antitubercular drugs and identify a genus-specific surface loop on the enzyme as a selective target
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