A possibility of influence factors on winter physical damage of grapevines in a snowy vineyard

Hokkaido in northern Japan is a typical subpolar region and wine production using traditional cultivars can be done recently. However, there is an issue that the grapevines have short life spans in snowy central Hokkaido. This study investigates the effect of snow itself and its interaction with vineyard slope and grapevine stiffness on physical stress. In comparison of the flatness of the vineyard, the distortion of the basal trunk in the slope zone was greater than in the flat zones in the snowy mid-season. In comparison between cultivars, the distortion of the basal trunk in the flexible 'Kerner' was greater than in rigid 'Gewürztraminer', even in the flat zones. The magnitude of the distortion coincides with the mortality of grapevines. Although the changes in distortion showed a transition in just two winter durations, these results suggested a possibility that the snow cover might be linked to one of the physical damages of grapevines in vineyards in heavy snowy regions

Amoebozoa possess lineage-specific globin gene repertoires gained by individual horizontal gene transfers

The Amoebozoa represent a clade of unicellular amoeboid organisms that display a wide variety of lifestyles, including free-living and parasitic species. For example, the social amoeba Dictyostelium discoideum has the ability to aggregate into a multicellular fruiting body upon starvation, while the pathogenic amoeba Entamoeba histolytica is a parasite of humans. Globins are small heme proteins that are present in almost all extant organisms. Although several genomes of amoebozoan species have been sequenced, little is known about the phyletic distribution of globin genes within this phylum. Only two flavohemoglobins (FHbs) of D. discoideum have been reported and characterized previously while the genomes of Entamoeba species are apparently devoid of globin genes. We investigated eleven amoebozoan species for the presence of globin genes by genomic and phylogenetic in silico analyses. Additional FHb genes were identified in the genomes of four social amoebas and the true slime mold Physarum polycephalum. Moreover, a single-domain globin (SDFgb) of Hartmannella vermiformis, as well as two truncated hemoglobins (trHbs) of Acanthamoeba castellanii were identified. Phylogenetic evidence suggests that these globin genes were independently acquired via horizontal gene transfer from some ancestral bacteria. Furthermore, the phylogenetic tree of amoebozoan FHbs indicates that they do not share a common ancestry and that a transfer of FHbs from bacteria to amoeba occurred multiple times

On Heating of Cluster Cooling Flows by Sound Waves

We investigate heating of the cool core of a galaxy cluster through the dissipation of sound waves excited by the activities of the central active galactic nucleus (AGN). Using a weak shock theory, we show that this heating mechanism alone cannot reproduce observed temperature and density profiles of a cluster, because the dissipation length of the waves is much smaller than the size of the core and thus the wave energy is not distributed to the whole core. However, we find that if it is combined with thermal conduction from the hot outer layer of the cluster, the wave heating can reproduce the observational results.Comment: Accepted for publication in ApJ

Magic numbers in exotic nuclei and spin-isospin properties of {\it NN} interaction

The magic numbers in exotic nuclei are discussed, and their novel origin is shown to be the spin-isospin dependent part of the nucleon-nucleon interaction in nuclei. The importance and robustness of this mechanism is shown in terms of meson exchange, G-matrix and QCD theories. In neutron-rich exotic nuclei, magic numbers such as N = 8, 20, etc. can disappear, while N = 6, 16, etc. arise, affecting the structure of lightest exotic nuclei to nucleosynthesis of heavy elements.Comment: 4 pages, 3 figures, revte

Phases of N=1 Supersymmetric SO/Sp Gauge Theories via Matrix Model

We extend the results of Cachazo, Seiberg and Witten to N=1 supersymmetric gauge theories with gauge groups SO(2N), SO(2N+1) and Sp(2N). By taking the superpotential which is an arbitrary polynomial of adjoint matter \Phi as a small perturbation of N=2 gauge theories, we examine the singular points preserving N=1 supersymmetry in the moduli space where mutually local monopoles become massless. We derive the matrix model complex curve for the whole range of the degree of perturbed superpotential. Then we determine a generalized Konishi anomaly equation implying the orientifold contribution. We turn to the multiplication map and the confinement index K and describe both Coulomb branch and confining branch. In particular, we construct a multiplication map from SO(2N+1) to SO(2KN-K+2) where K is an even integer as well as a multiplication map from SO(2N) to SO(2KN-2K+2) (K is a positive integer), a map from SO(2N+1) to SO(2KN-K+2) (K is an odd integer) and a map from Sp(2N) to Sp(2KN+2K-2). Finally we analyze some examples which show some duality: the same moduli space has two different semiclassical limits corresponding to distinct gauge groups.Comment: 55pp; two paragraphs in page 19 added to clarify the relation between confinement index and multiplication map index, refs added and to appear in JHEP; Konishi anomaly equations corrected and some comments on the degenerated cases for SO(7) and SO(8) adde

Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis

Mammalian promoters are categorized into TATA and CpG-related groups, and they have complementary roles associated with differentiated transcriptional characteristics. While the TATA box is also found in plant promoters, it is not known if CpG-type promoters exist in plants. Plant promoters contain Y Patches (pyrimidine patches) in the core promoter region, and the ubiquity of these beyond higher plants is not understood as well. Sets of promoter sequences were utilized for the analysis of local distribution of short sequences (LDSS), and approximately one thousand octamer sequences have been identified as promoter constituents from Arabidopsis, rice, human and mouse, respectively. Based on their localization profiles, the identified octamer sequences were classified into several major groups, REG (Regulatory Element Group), TATA box, Inr (Initiator), Kozak, CpG and Y Patch. Comparison of the four species has revealed three categories: (i) shared groups found in both plants and mammals (TATA box), (ii) common groups found in both kingdoms but the utilized sequence is differentiated (REG, Inr and Kozak) and (iii) specific groups found in either plants or mammals (CpG and Y Patch). Our comparative LDSS analysis has identified conservation and differentiation of promoter architectures between higher plants and mammals

A community intervention trial of multimodal suicide prevention program in Japan: A Novel multimodal Community Intervention program to prevent suicide and suicide attempt in Japan, NOCOMIT-J

<p>Abstract</p> <p>Background</p> <p>To respond to the rapid surge in the incidence of suicide in Japan, which appears to be an ongoing trend, the Japanese Multimodal Intervention Trials for Suicide Prevention (J-MISP) have launched a multimodal community-based suicide prevention program, NOCOMIT-J. The primary aim of this study is to examine whether NOCOMIT-J is effective in reducing suicidal behavior in the community.</p> <p>Methods/DesignThis study is a community intervention trial involving seven intervention regions with accompanying control regions, all with populations of statistically sufficient size. The program focuses on building social support networks in the public health system for suicide prevention and mental health promotion, intending to reinforce human relationships in the community. The intervention program components includes a primary prevention measures of awareness campaign for the public and key personnel, secondary prevention measures for screening of, and assisting, high-risk individuals, after-care for individuals bereaved by suicide, and other measures. The intervention started in July 2006, and will continue for 3.5 years. Participants are Japanese and foreign residents living in the intervention and control regions (a total of population of 2,120,000 individuals).</p> <p>Discussion</p> <p>The present study is designed to evaluate the effectiveness of the community-based suicide prevention program in the seven participating areas.</p> <p>Trial registration</p> <p>UMIN Clinical Trials Registry (UMIN-CTR) UMIN000000460.</p

Polarimetric Imaging of Large Cavity Structures in the Pre-transitional Protoplanetary Disk around PDS 70: Observations of the disk

We present high resolution H-band polarized intensity (PI; FWHM = 0."1: 14 AU) and L'-band imaging data (FWHM = 0."11: 15 AU) of the circumstellar disk around the weak-lined T Tauri star PDS 70 in Centaurus at a radial distance of 28 AU (0."2) up to 210 AU (1."5). In both images, a giant inner gap is clearly resolved for the first time, and the radius of the gap is ~70 AU. Our data show that the geometric center of the disk shifts by ~6 AU toward the minor axis. We confirm that the brown dwarf companion candidate to the north of PDS 70 is a background star based on its proper motion. As a result of SED fitting by Monte Carlo radiative transfer modeling, we infer the existence of an optically thick inner disk at a few AU. Combining our observations and modeling, we classify the disk of PDS 70 as a pre-transitional disk. Furthermore, based on the analysis of L'-band imaging data, we put an upper limit mass of companions at ~30 to ~50MJ within the gap. Taking account of the presence of the large and sharp gap, we suggest that the gap could be formed by dynamical interactions of sub-stellar companions or multiple unseen giant planets in the gap.Comment: accepted by APJ

Tsunamis in Galaxy Clusters: Heating of Cool Cores by Acoustic Waves

Using an analytical model and numerical simulations, we show that acoustic waves generated by turbulent motion in intracluster medium effectively heat the central region of a so-called ``cooling flow'' cluster. We assume that the turbulence is generated by substructure motion in a cluster or cluster mergers. Our analytical model can reproduce observed density and temperature profiles of a few clusters. We also show that waves can transfer more energy from the outer region of a cluster than thermal conduction alone. Numerical simulations generally support the results of the analytical study.Comment: 18 pages, accepted for publication in Ap

GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics

A large number of sensitive homology searches are required for mapping DNA sequence fragments to known protein sequences in public and private databases during metagenomic analysis. BLAST is currently used for this purpose, but its calculation speed is insufficient, especially for analyzing the large quantities of sequence data obtained from a next-generation sequencer. However, faster search tools, such as BLAT, do not have sufficient search sensitivity for metagenomic analysis. Thus, a sensitive and efficient homology search tool is in high demand for this type of analysis.We developed a new, highly efficient homology search algorithm suitable for graphics processing unit (GPU) calculations that was implemented as a GPU system that we called GHOSTM. The system first searches for candidate alignment positions for a sequence from the database using pre-calculated indexes and then calculates local alignments around the candidate positions before calculating alignment scores. We implemented both of these processes on GPUs. The system achieved calculation speeds that were 130 and 407 times faster than BLAST with 1 GPU and 4 GPUs, respectively. The system also showed higher search sensitivity and had a calculation speed that was 4 and 15 times faster than BLAT with 1 GPU and 4 GPUs.We developed a GPU-optimized algorithm to perform sensitive sequence homology searches and implemented the system as GHOSTM. Currently, sequencing technology continues to improve, and sequencers are increasingly producing larger and larger quantities of data. This explosion of sequence data makes computational analysis with contemporary tools more difficult. We developed GHOSTM, which is a cost-efficient tool, and offer this tool as a potential solution to this problem