Improved estimation of leaf area index and leaf chlorophyll content of a potato crop using multi-angle spectral data – potential of unmanned aerial vehicle imagery

In addition to single-angle reflectance data, multi-angular observations can be used as an additional information source for the retrieval of properties of an observed target surface. In this paper, we studied the potential of multi-angular reflectance data for the improvement of leaf area index (LAI) and leaf chlorophyll content (LCC) estimation by numerical inversion of the PROSAIL model. The potential for improvement of LAI and LCC was evaluated for both measured data and simulated data. The measured data was collected on 19 July 2016 by a frame-camera mounted on an unmanned aerial vehicle (UAV) over a potato field, where eight experimental plots of 30 × 30 m were designed with different fertilization levels. Dozens of viewing angles, covering the hemisphere up to around 30° from nadir, were obtained by a large forward and sideways overlap of collected images. Simultaneously to the UAV flight, in situ measurements of LAI and LCC were performed. Inversion of the PROSAIL model was done based on nadir data and based on multi-angular data collected by the UAV. Inversion based on the multi-angular data performed slightly better than inversion based on nadir data, indicated by the decrease in RMSE from 0.70 to 0.65 m2/m2 for the estimation of LAI, and from 17.35 to 17.29 μg/cm2 for the estimation of LCC, when nadir data were used and when multi-angular data were used, respectively. In addition to inversions based on measured data, we simulated several datasets at different multi-angular configurations and compared the accuracy of the inversions of these datasets with the inversion based on data simulated at nadir position. In general, the results based on simulated (synthetic) data indicated that when more viewing angles, more well distributed viewing angles, and viewing angles up to larger zenith angles were available for inversion, the most accurate estimations were obtained. Interestingly, when using spectra simulated at multi-angular sampling configurations as were captured by the UAV platform (view zenith angles up to 30°), already a huge improvement could be obtained when compared to solely using spectra simulated at nadir position. The results of this study show that the estimation of LAI and LCC by numerical inversion of the PROSAIL model can be improved when multi-angular observations are introduced. However, for the potato crop, PROSAIL inversion for measured data only showed moderate accuracy and slight improvements

Improved estimation of leaf area index and leaf chlorophyll content of a potato crop using multi-angle spectral data - potential of unmanned aerial vehicle imagery

In addition to single-angle reflectance data, multi-angular observations can be used as an additional information source for the retrieval of properties of an observed target surface. In this paper, we studied the potential of multi-angular reflectance data for the improvement of leaf area index (LAI) and leaf chlorophyll content (LCC) estimation by numerical inversion of the PROSAIL model. The potential for improvement of LAI and LCC was evaluated for both measured data and simulated data. The measured data was collected on 19 July 2016 by a frame-camera mounted on an unmanned aerial vehicle (UAV) over a potato field, where eight experimental plots of 30 × 30 m were designed with different fertilization levels. Dozens of viewing angles, covering the hemisphere up to around 30° from nadir, were obtained by a large forward and sideways overlap of collected images. Simultaneously to the UAV flight, in situ measurements of LAI and LCC were performed. Inversion of the PROSAIL model was done based on nadir data and based on multi-angular data collected by the UAV. Inversion based on the multi-angular data performed slightly better than inversion based on nadir data, indicated by the decrease in RMSE from 0.70 to 0.65 m2/m2 for the estimation of LAI, and from 17.35 to 17.29 μg/cm2 for the estimation of LCC, when nadir data were used and when multi-angular data were used, respectively. In addition to inversions based on measured data, we simulated several datasets at different multi-angular configurations and compared the accuracy of the inversions of these datasets with the inversion based on data simulated at nadir position. In general, the results based on simulated (synthetic) data indicated that when more viewing angles, more well distributed viewing angles, and viewing angles up to larger zenith angles were available for inversion, the most accurate estimations were obtained. Interestingly, when using spectra simulated at multi-angular sampling configurations as were captured by the UAV platform (view zenith angles up to 30°), already a huge improvement could be obtained when compared to solely using spectra simulated at nadir position. The results of this study show that the estimation of LAI and LCC by numerical inversion of the PROSAIL model can be improved when multi-angular observations are introduced. However, for the potato crop, PROSAIL inversion for measured data only showed moderate accuracy and slight improvements

Remote sensing of plant trait responses to field-based plant-soil feedback using UAV-based optical sensors

Plant responses to biotic and abiotic legacies left in soil by preceding plants is known as plant-soil feedback (PSF). PSF is an important mechanism to explain plant community dynamics and plant performance in natural and agricultural systems. However, most PSF studies are short-term and small-scale due to practical constraints for field-scale quantification of PSF effects, yet field experiments are warranted to assess actual PSF effects under less controlled conditions. Here we used unmanned aerial vehicle (UAV)-based optical sensors to test whether PSF effects on plant traits can be quantified remotely. We established a randomized agro-ecological field experiment in which six different cover crop species and species combinations from three different plant families (Poaceae, Fabaceae, Brassicaceae) were grown. The feedback effects on plant traits were tested in oat (Avena sativa) by quantifying the cover crop legacy effects on key plant traits: height, fresh biomass, nitrogen content, and leaf chlorophyll content. Prior to destructive sampling, hyperspectral data were acquired and used for calibration and independent validation of regression models to retrieve plant traits from optical data. Subsequently, for each trait the model with highest precision and accuracy was selected. We used the hyperspectral analyses to predict the directly measured plant height (RMSE=5.12cm, R2=0.79), chlorophyll content (RMSE=0.11gm-2, R2=0.80), N-content (RMSE=1.94gm-2, R2=0.68), and fresh biomass (RMSE=0.72kgm-2, R2=0.56). Overall the PSF effects of the different cover crop treatments based on the remote sensing data matched the results based on in situ measurements. The average oat canopy was tallest and its leaf chlorophyll content highest in response to legacy of Vicia sativa monocultures (100cm, 0.95gm-2, respectively) and in mixture with Raphanus sativus (100cm, 1.09gm-2, respectively), while the lowest values (76cm, 0.41gm-2, respectively) were found in response to legacy of Lolium perenne monoculture, and intermediate responses to the legacy of the other treatments. We show that PSF effects in the field occur and alter several important plant traits that can be sensed remotely and quantified in a non-destructive way using UAV-based optical sensors; these can be repeated over the growing season to increase temporal resolution. Remote sensing thereby offers great potential for studying PSF effects at field scale and relevant spatial-temporal resolutions which will facilitate the elucidation of the underlying mechanisms.</p

van der Meij et al_Biogeosciences2017_data

The experimental set-up, treatments, data collection and data analyses are thoroughly described in the Biogeoscience manuscript ‘Remote sensing of plant trait responses to field-based plant-soil feedback using UAV-based optical sensors’ doi:10.5194/bg-2016-452. Therefore we refer to the manuscript for detailed information an here we provide a brief summary to enable readers to follow what the data entail. The data were collected from a 2-year field experiment with plant rotations in a full factorial design. The plant treatments we focused on are legacy effects of the plant treatments (listed below) to the following oat crop. In this oat crop we quantified several plant traits both in situ and via remote sensing by use of UAV and hyperspectral and EGB sensors. The experiment was set-up in five randomized field blocks. We used part of the in situ collected data to parameterize the hyperspectral data based models and we validated these models with the other half of the field plots. Plant treatments Fa= fallow Lp= Lolium perenne Rs= Raphanus sativus Tr= Trifolium repens Vs= Vicia sativa Lp+Tr= 50:50 species mixture (relative to the monoculture seed densities) of the species Lp and Tr Rs+Vs= 50:50 species mixture (relative to the monoculture seed densities) of the species Rs and V

Mapping Reflectance Anisotropy of a Potato Canopy Using Aerial Images Acquired with an Unmanned Aerial Vehicle

Viewing and illumination geometry has a strong influence on optical measurements of natural surfaces due to their anisotropic reflectance properties. Typically, cameras on-board unmanned aerial vehicles (UAVs) are affected by this because of their relatively large field of view (FOV) and thus large range of viewing angles. In this study, we investigated the magnitude of reflectance anisotropy effects in the 500–900 nm range, captured by a frame camera mounted on a UAV during a standard mapping flight. After orthorectification and georeferencing of the images collected by the camera, we calculated the viewing geometry of all observations of each georeferenced ground pixel, forming a dataset with multi-angular observations. We performed UAV flights on two days during the summer of 2016 over an experimental potato field where different zones in the field received different nitrogen fertilization treatments. These fertilization levels caused variation in potato plant growth and thereby differences in structural properties such as leaf area index (LAI) and canopy cover. We fitted the Rahman–Pinty–Verstraete (RPV) model through the multi-angular observations of each ground pixel to quantify, interpret, and visualize the anisotropy patterns in our study area. The Θ parameter of the RPV model, which controls the proportion of forward and backward scattering, showed strong correlation with canopy cover, where in general an increase in canopy cover resulted in a reduction of backward scattering intensity, indicating that reflectance anisotropy contains information on canopy structure. In this paper, we demonstrated that anisotropy data can be extracted from measurements using a frame camera, collected during a typical UAV mapping flight. Future research will focus on how to use the anisotropy signal as a source of information for estimation of physical vegetation properties

Exploring the contributions of vegetation and dune size to early dune development using unmanned aerial vehicle (UAV) imaging

Dune development along highly dynamic land-sea boundaries is the result of interaction between vegetation and dune size with sedimentation and erosion processes. Disentangling the contribution of vegetation characteristics from that of dune size would improve predictions of nebkha dune development under a changing climate, but has proven difficult due to the scarcity of spatially continuous monitoring data. This study explored the contributions of vegetation and dune size to dune development for locations differing in shelter from the sea. We monitored a natural nebkha dune field of 8 ha, along the coast of the island Texel, the Netherlands, for 1 year using an unmanned aerial vehicle (UAV) with camera. After constructing a digital surface model and orthomosaic we derived for each dune (1) vegetation characteristics (species composition, vegetation density, and maximum vegetation height), (2) dune size (dune volume, area, and maximum height), (3) degree of shelter (proximity to other nebkha dunes and the sheltering by the foredune). Changes in dune volume over summer and winter were related to vegetation, dune size and degree of shelter. We found that a positive change in dune volume (dune growth) was linearly related to initial dune volume over summer but not over winter. Big dunes accumulated more sand than small dunes due to their larger surface area. Exposed dunes increased more in volume (0.81 % per dune per week) than sheltered dunes (0.2 % per dune per week) over summer, while the opposite occurred over winter. Vegetation characteristics did not significantly affect dune growth in summer, but did significantly affect dune growth in winter. Over winter, dunes dominated by Ammophila arenaria, a grass species with high vegetation density throughout the year, increased more in volume than dunes dominated by Elytrigia juncea, a grass species with lower vegetation density (0.43 vs. 0.42 (m3 m-3) week-1). The effect of species was irrespective of dune size or distance to the sea. Our results show that dune growth in summer is mainly determined by dune size, whereas in winter dune growth was determined by vegetation type. In our study area the growth of exposed dunes was likely restricted by storm erosion, whereas growth of sheltered dunes was restricted by sand supply. Our results can be used to improve models predicting coastal dune development.</p

Field trial with tactical bubbles for mission critical communications

Abstract Main research and development interest of 5G and beyond systems are focusing on solution for populated and hot spot areas, but public safety authorities need reliable communication solutions in rural and remote areas. Tactical bubbles—ad hoc-type nonpublic communications networks built with the 3rd Generation Partnership Project-based mobile technologies—offer mission critical communications services for public safety authorities in areas with bad mobile network coverage while also providing additional capacity in hot spot areas. In this experimental study, three interconnected bubbles acting on three different frequency bands—2.3 GHz (40), 2.6 GHz (7), and 3.5 GHz (n78)—are trialed. This article provides the analysis of different factors related to performance and user experience of tactical bubbles. Both ground-level and aerial trial measurements, as well as simulations, were utilized to verify our configuration for the tactical bubbles and their fulfillment of the quality requirements. The performance and coverage of the tactical bubbles are evaluated in a trial, which represents authorities’ search operations in a rural environment with hills, forests, and swamps. The achieved coverage range of the bubbles is more than 1000 m with the unmanned aerial system-based measurements, whereas by car, the coverage is less than 600 m. The effect of obstacles (ie, buildings and hills) on the coverage area and performance of bubbles is significant, especially on car-based measurements on the ground level

Identification of locations susceptible to osteoarthritis in patients with anterior cruciate ligament reconstruction: Combining knee joint computational modelling with follow-up T₁ρ and T₂ imaging

Abstract Background: Finite element modelling can be used to evaluate altered loading conditions and failure locations in knee joint tissues. One limitation of this modelling approach has been experimental comparison. The aims of this proof-of-concept study were: 1) identify areas susceptible to osteoarthritis progression in anterior cruciate ligament reconstructed patients using finite element modelling; 2) compare the identified areas against changes in T₂ and T₁ₚ values between 1-year and 3-year follow-up timepoints. Methods: Two patient-specific finite element models of knee joints with anterior cruciate ligament reconstruction were created. The knee geometry was based on clinical magnetic resonance imaging and joint loading was obtained via motion capture. We evaluated biomechanical parameters linked with cartilage degeneration and compared the identified risk areas against T₂ and T₁ₚ maps. Findings: The risk areas identified by the finite element models matched the follow-up magnetic resonance imaging findings. For Patient 1, excessive values of maximum principal stresses and shear strains were observed in the posterior side of the lateral tibial and femoral cartilage. For Patient 2, high values of maximum principal stresses and shear strains of cartilage were observed in the posterior side of the medial joint compartment. For both patients, increased T₂ and T₁ₚ values between the follow-up times were observed in the same areas. Interpretation: Finite element models with patient-specific geometries and motions and relatively simple material models of tissues were able to identify areas susceptible to post-traumatic knee osteoarthritis. We suggest that the methodology presented here may be applied in large cohort studies

Correction to: Rapid X-ray-based 3-D finite element modeling of medial knee joint cartilage biomechanics during walking

Correction to: Jahangir, S., Mohammadi, A., Mononen, M.E. et al. Rapid X-Ray-Based 3-D Finite Element Modeling of Medial Knee Joint Cartilage Biomechanics During Walking. Ann Biomed Eng 50, 666–679 (2022). https://doi.org/10.1007/s10439-022-02941-0 Rinnakkaistallennettu versio / Self-archived versio

Rapid X-ray-based 3-D finite element modeling of medial knee joint cartilage biomechanics during walking

Abstract Finite element (FE) modeling is becoming an increasingly popular method for analyzing knee joint mechanics and biomechanical mechanisms leading to osteoarthritis (OA). The most common and widely available imaging method for knee OA diagnostics is planar X-ray imaging, while more sophisticated imaging methods, e.g., magnetic resonance imaging (MRI) and computed tomography (CT), are seldom used. Hence, the capability to produce accurate biomechanical knee joint models directly from X-ray imaging would bring FE modeling closer to clinical use. Here, we extend our atlas-based framework by generating FE knee models from X-ray images (N = 28). Based on measured anatomical landmarks from X-ray and MRI, knee joint templates were selected from the atlas library. The cartilage stresses and strains of the X-ray-based model were then compared with the MRI-based model during the stance phase of the gait. The biomechanical responses were statistically not different between MRI- vs. X-ray-based models when the template obtained from X-ray imaging was the same as the MRI template. However, if this was not the case, the peak values of biomechanical responses were statistically different between X-ray and MRI models. The developed X-ray-based framework may pave the way for a clinically feasible approach for knee joint FE modeling