Long-distance dispersal in amphibians

Although the distribution patterns of major amphibian lineages are mainly explained by a Pangean origin with subsequent vicariant diversification, dispersal events have exerted a strong influence on present-day distributions. Long-distance dispersal (LDD) involves movements outside the standard geographic limits and outside the genetic neighbourhood area of individuals. Although considered ‘rare’, LDD is disproportionately important to amphibian populations, species and communities. To understand the role of LDD in shaping current biogeographic patterns in these tetrapods, we reviewed the cases reported in the literature. A systematic bibliographic search was performed to obtain information on how many studies have dealt with LDD in amphibians, which methods they used, which taxa and distances were involved, and when/where events had apparently occurred. In 41 studies, we recovered at least 90 LDD events (3 active, 87 passive) involving at least 56 extant species and 38 genera. Most events (73) involved the colonization of islands, with rafting being suggested as the most conceivable means of overwater passive dispersal for these vertebrates. In this review, we show that LDD events have played an important role in shaping current amphibian biogeographic patterns, especially the occurrence of disjunct distributions and the colonization of islands

Mind the gap! A review of Amazonian anurans in GenBank

We studied the knowledge gap in GenBank with regard to the ca. 600 anuran species from Amazonia. The markers 12S, 16S, COI and cytb were examined, on which information was available for about half of all species. Both the number of sample sites and the number of samples per species varied greatly (best studied each in 16S: 4.85 ± 10.37; 11.19 ± 31.20), and merely one fifth of all species had at least 5 sample sites. This suggests that a considerable portion of species is underrepresented in GenBank. Representativeness is especially difficult to assess in widespread species that at the same time could well represent cryptic allopatric species (i.e., with smaller distributions). This is a well-known phenomenon in Amazonian anurans considering that truly widespread species do exist. Moreover, limited sampling may not necessarily be the result of limited representativeness, as numerous species are known to occupy relatively small localised to regional ranges only. Our study furthermore revealed that in a geographic context, major portions of Amazonia have as yet been undersampled. That is, the total of 453 sample sites (most with more than one species sampled) are spatially clustered, often in areas with increased anthropogenic activity. We conclude that there is a large knowledge gap in terms of spatial sampling, resulting in taxonomic deficiencies

Expanding distribution of lethal amphibian fungus Batrachochytrium salamandrivorans in Europe

Emerging fungal diseases can drive amphibian species to local extinction. During 2010-2016, we examined 1,921 urodeles in 3 European countries. Presence of the chytrid fungus Batrachochytrium salamandrivorans at new locations and in urodeles of different species expands the known geographic and host range of the fungus and underpins its imminent threat to biodiversity

Transcriptomic signatures of experimental alkaloid consumption in a poison frog

© 2019 by the authors. Licensee MDPI, Basel, Switzerland. In the anuran family Dendrobatidae, aposematic species obtain their toxic or unpalatable alkaloids from dietary sources, a process known as sequestering. To understand how toxicity evolved in this family, it is paramount to elucidate the pathways of alkaloid processing (absorption, metabolism, and sequestering). Here, we used an exploratory skin gene expression experiment in which captive-bred dendrobatids were fed alkaloids. Most of these experiments were performed with Dendrobates tinctorius, but some trials were performed with D. auratus, D. leucomelas and Allobates femoralis to explore whether other dendrobatids would show similar patterns of gene expression. We found a consistent pattern of up-regulation of genes related to muscle and mitochondrial processes, probably due to the lack of mutations related to alkaloid resistance in these species. Considering conserved pathways of drug metabolism in vertebrates, we hypothesize alkaloid degradation is a physiological mechanism of resistance, which was evidenced by a strong upregulation of the immune system in D. tinctorius, and of complement C2 across the four species sampled. Probably related to this strong immune response, we found several skin keratins downregulated, which might be linked to a reduction of the cornified layer of the epidermis. Although not conclusive, our results offer candidate genes and testable hypotheses to elucidate alkaloid processing in poison frogs

Phylogenetic relationships and systematics of the Amazonian poison frog genus Ameerega using ultraconserved genomic elements

The Amazonian poison frog genus Ameerega is one of the largest yet most understudied of the brightly colored genera in the anuran family Dendrobatidae, with 30 described species ranging throughout tropical South America. Phylogenetic analyses of Ameerega are highly discordant, lacking consistency due to variation in data types and methods, and often with limited coverage of species diversity in the genus. Here, we present a comprehensive phylogenomic reconstruction of Ameerega, utilizing state-of-the-art sequence capture techniques and phylogenetic methods. We sequenced thousands of ultraconserved elements from over 100 tissue samples, representing almost every described Ameerega species, as well as undescribed cryptic diversity. We generated topologies using maximum likelihood and coalescent methods and compared the use of maximum likelihood and Bayesian methods for estimating divergence times. Our phylogenetic inference diverged strongly from those of previous studies, and we recommend steps to bring Ameerega taxonomy in line with the new phylogeny. We place several species in a phylogeny for the first time, as well as provide evidence for six potential candidate species. We estimate that Ameerega experienced a rapid radiation approximately 7–11 million years ago and that the ancestor of all Ameerega was likely an aposematic, montane species. This study underscores the utility of phylogenomic data in improving our understanding of the phylogeny of understudied clades and making novel inferences about their evolution

Alien Invasive Slider Turtle in Unpredicted Habitat: A Matter of Niche Shift or of Predictors Studied?

BACKGROUND: Species Distribution Models (SDMs) aim on the characterization of a species' ecological niche and project it into geographic space. The result is a map of the species' potential distribution, which is, for instance, helpful to predict the capability of alien invasive species. With regard to alien invasive species, recently several authors observed a mismatch between potential distributions of native and invasive ranges derived from SDMs and, as an explanation, ecological niche shift during biological invasion has been suggested. We studied the physiologically well known Slider turtle from North America which today is widely distributed over the globe and address the issue of ecological niche shift versus choice of ecological predictors used for model building, i.e., by deriving SDMs using multiple sets of climatic predictor. PRINCIPAL FINDINGS: In one SDM, predictors were used aiming to mirror the physiological limits of the Slider turtle. It was compared to numerous other models based on various sets of ecological predictors or predictors aiming at comprehensiveness. The SDM focusing on the study species' physiological limits depicts the target species' worldwide potential distribution better than any of the other approaches. CONCLUSION: These results suggest that a natural history-driven understanding is crucial in developing statistical models of ecological niches (as SDMs) while "comprehensive" or "standard" sets of ecological predictors may be of limited use