Investigating the ferric ion binding site of magnetite biomineralisation protein Mms6

The biomineralization protein Mms6 has been shown to be a major player in the formation of magnetic nanoparticles both within the magnetosomes of magnetotactic bacteria and as an additive in synthetic magnetite precipitation assays. Previous studies have highlighted the ferric iron binding capability of the protein and this activity is thought to be crucial to its mineralizing properties. To understand how this protein binds ferric ions we have prepared a series of single amino acid substitutions within the C-terminal binding region of Mms6 and have used a ferric binding assay to probe the binding site at the level of individual residues which has pinpointed the key residues of E44, E50 and R55 involved in Mms6 ferric binding. No aspartic residues bound ferric ions. A nanoplasmonic sensing experiment was used to investigate the unstable EER44, 50,55AAA triple mutant in comparison to native Mms6. This suggests a difference in interaction with iron ions between the two and potential changes to the surface precipitation of iron oxide when the pH is increased. All-atom simulations suggest that disruptive mutations do not fundamentally alter the conformational preferences of the ferric binding region. Instead, disruption of these residues appears to impede a sequence-specific motif in the C-terminus critical to ferric ion binding

Phage display selected magnetite interacting Adhirons for shape controlled nanoparticle synthesis

Adhirons are robust, well expressing, peptide display scaffold proteins, developed as an effective alternative to traditional antibody binding proteins for highly specific molecular recognition applications. This paper reports for the first time the use of these versatile proteins for material binding, and as tools for controlling material synthesis on the nanoscale. A phage library of Adhirons, each displaying two variable binding loops, was screened to identify specific proteins able to interact with [100] faces of cubic magnetite nanoparticles. The selected variable regions display a strong preference for basic residues such as lysine. Molecular dynamics simulations of amino acid adsorption onto a [100] magnetite surface provides a rationale for these interactions, with the lowest adsorption energy observed with lysine. These proteins direct the shape of the forming nanoparticles towards a cubic morphology in room temperature magnetite precipitation reactions, in stark contrast to the high temperature, harsh reaction conditions currently used to produce cubic nanoparticles. These effects demonstrate the utility of the selected Adhirons as novel magnetite mineralization control agents using ambient aqueous conditions. The approach we outline with artificial protein scaffolds has the potential to develop into a toolkit of novel additives for wider nanomaterial fabrication

Methods for detecting and quantifying individual specialisation in movement and foraging strategies of marine predators

There is increasing realisation that individuals in many animal populations differ substantially in resource, space or habitat use. Differences that cannot be attributed to any a priori way of classifying individuals (i.e. age, sex and other group effects) are often termed ‘individual specialisation’. The aim of this paper is to assess the most common approaches for detecting and quantifying individual specialisation and consistencies in foraging behaviour, movement patterns and diet of marine predators using 3 types of data: conventional diet data, stable isotope ratios and tracking data. Methods using conventional diet data rely on a comparison between the proportions of each dietary source in the total diet and in the diet of individuals, or analyses of the statistical distribution of a prey metric (e.g. size); the latter often involves comparing ratios of individual and population variance. Approaches frequently used to analyse stable isotope or tracking data reduced to 1 dimension (trip characteristics, e.g. maximum trip distance or latitude/longitude at certain landmarks) include correlation tests and repeatability analysis. Finally, various spatial analyses are applied to other types of tracking data (e.g. distances between centroids of distributions or migratory routes, or overlap between distributions), and methods exist to compare habitat use. We discuss the advantages and disadvantages of these approaches, issues arising from other effects unrelated to individual specialisation per se (in particular those related to temporal scale) and potential solutions

Draft Genome Sequence of Magnetovibrio blakemorei Strain MV-1, a Marine Vibrioid Magnetotactic Bacterium.

We report here the genome sequence of Magnetovibrio blakemorei MV-1, a marine vibrioid magnetotactic bacterium with a single polar flagellum. The current assembly consists of 91 contigs with a combined size of 3,638,804 bp (54.3% G+C content). This genome allows for further investigations of the molecular biomineralization mechanisms of magnetosome formation

Biomagnetic recovery of selenium: Bioaccumulating of selenium granules in magnetotactic bacteria

Using microorganisms to remove waste and/or neutralize pollutants from contaminated water is attracting much attention due to the environmentally friendly nature of this methodology. However, cell recovery remains a bottleneck and a considerable challenge for the development of this process. Magnetotactic bacteria are a unique group of organisms that can be manipulated by an external magnetic field due to the presence of biogenic magnetite crystals formed within their cells. In this study, we demonstrated the first account of accumulation and precipitation of amorphous elemental selenium nanoparticles within magnetotactic bacteria alongside and independently to magnetite crystal biomineralisation when grown in a medium containing selenium oxyanion (SeO3 (2-)). Quantitative analysis shows that magnetotactic bacteria accumulate the highest amount of target molecules (Se) per cell than any other previously reported of non-ferrous metal/metalloid. For example, 2.4 and 174 times more Se is accumulated when compared to Te uptaken into cells and Cd(2+) adsorption onto the cell surface respectively. Crucially, the bacteria with high levels of Se accumulation were successfully recovered with an external magnetic field. This biomagnetic recovery and effective accumulation of target elements demonstrate the potential for application in bioremediation of polluted water. IMPORTANCE: The development of a technique for effective environmental water remediation is urgently required across the globe. A biological remediation process of waste removal and/or neutralization of pollutant from contaminated water using microorganism has great potential, but cell recovery remains a bottleneck. Magnetotactic bacteria synthesize magnetic particles within their cells, which can be recovered by a magnetic field. Herein, we report the first example of accumulation and precipitation of amorphous elemental selenium nanoparticles within magnetotactic bacteria independent of magnetic particle synthesis. The cells were able to accumulate the highest amount of Se compared to other foreign elements. More importantly, the Se accumulating bacteria were successfully recovered with an external magnetic field. We believe magnetotactic bacteria confer unique advantages of biomagnetic cell recovery and of Se accumulation, providing a new and effective methodology for bioremediation of polluted water

Network Structure of Insurgent Groups and the Success of DDR Processes in Colombia

We argue that organizational structure of insurgent organizations influences the prospects for success in a disarmament, demobilization, and reintegration process (DDR). In concrete, we argue that more cohesive, tighter, networks have higher levels of supervision and control on its military units and increase the probability of successful DDR processes. In order to evaluate our hypotheses, we use the theory of networks to map and characterize the network structure of the United Self-Defense Forces of Colombia (AUC) and the Revolutionary Armed Forces of Colombia (FARC). Our results suggest that armed military units grouped in smaller and more isolated components on the network remilitarize with higher probability with respect to other units on the network. Also, we find that military units with high degree of centrality on the network play an important role for the risk of conflict recurrence and success in a DDR process

A versatile non-fouling multi-step flow reactor platform: demonstration for partial oxidation synthesis of iron oxide nanoparticles

In the last decade flow reactors for material synthesis were firmly established, demonstrating advantageous operating conditions, reproducible and scalable production via continuous operation, as well as high-throughput screening of synthetic conditions. Reactor fouling, however, often restricts flow chemistry and the common fouling prevention via segmented flow comes at the cost of inflexibility. Often, the difficulty of feeding reagents into liquid segments (droplets or slugs) constrains flow syntheses using segmented flow to simple synthetic protocols with a single reagent addition step prior or during segmentation. Hence, the translation of fouling prone syntheses requiring multiple reagent addition steps into flow remains challenging. This work presents a modular flow reactor platform overcoming this bottleneck by fully exploiting the potential of three-phase (gas–liquid–liquid) segmented flow to supply reagents after segmentation, hence facilitating fouling free multi-step flow syntheses. The reactor design and materials selection address the operation challenges inherent to gas–liquid–liquid flow and reagent addition into segments allowing for a wide range of flow rates, flow ratios, temperatures, and use of continuous phases (no perfluorinated solvents needed). This “Lego®-like” reactor platform comprises elements for three-phase segmentation and sequential reagent addition into fluid segments, as well as temperature-controlled residence time modules that offer the flexibility required to translate even complex nanomaterial synthesis protocols to flow. To demonstrate the platform's versatility, we chose a fouling prone multi-step synthesis, i.e., a water-based partial oxidation synthesis of iron oxide nanoparticles. This synthesis required I) the precipitation of ferrous hydroxides, II) the addition of an oxidation agent, III) a temperature treatment to initiate magnetite/maghemite formation, and IV) the addition of citric acid to increase the colloidal stability. The platform facilitated the synthesis of colloidally stable magnetic nanoparticles reproducibly at well-controlled synthetic conditions and prevented fouling using heptane as continuous phase. The biocompatible particles showed excellent heating abilities in alternating magnetic fields (ILP values >3 nH m2 kgFe−1), hence, their potential for magnetic hyperthermia cancer treatment. The platform allowed for long term operation, as well as screening of synthetic conditions to tune particle properties. This was demonstrated via the addition of tetraethylenepentamine, confirming its potential to control particle morphology. Such a versatile reactor platform makes it possible to translate even complex syntheses into flow, opening up new opportunities for material synthesis

Saturn's Nightside Ring Current During Cassini's Grand Finale

During Cassini's Grand Finale proximal orbits, the spacecraft traversed the nightside magnetotail to ∼21 Saturn radii. Clear signatures of Saturn's equatorial current sheet are observed in the magnetic field data. An axisymmetric model of the ring current is fitted to these data, amended to take into account the tilt of the current layer by solar wind forcing, its teardrop‐shaped nature and the magnetotail and magnetopause fringing fields. Variations in ring current parameters are examined in relation to external driving of the magnetosphere by the solar wind and internal driving by the two planetary period oscillations (PPOs), and compared with previous dawn and dayside observations. We find that the relative phasing of the PPOs determines the ring current's response to solar wind conditions. During solar wind compressions when the PPOs are in antiphase, a thick partial ring current is formed on the nightside, dominated by hot plasma injected by tail reconnection. This partial ring current should close partly via magnetopause currents and possibly via field‐aligned currents into the ionosphere. However, during solar wind compressions when the PPOs are in phase, this partial ring current is not detected. During solar wind rarefactions an equatorial “magnetodisc” configuration is observed in the dayside/dawn/nightside regions, with similar total currents flowing at these local times. During very quiet intervals of prolonged solar wind rarefaction, a thin current sheet with an enhanced current density is formed, indicative of a ring current dominated by cool, dense, Enceladus water group ions

The impact of predation by marine mammals on Patagonian toothfish longline fisheries

Predatory interaction of marine mammals with longline fisheries is observed globally, leading to partial or complete loss of the catch and in some parts of the world to considerable financial loss. Depredation can also create additional unrecorded fishing mortality of a stock and has the potential to introduce bias to stock assessments. Here we aim to characterise depredation in the Patagonian toothfish (Dissostichus eleginoides) fishery around South Georgia focusing on the spatio-temporal component of these interactions. Antarctic fur seals (Arctocephalus gazella), sperm whales (Physeter macrocephalus), and orcas (Orcinus orca) frequently feed on fish hooked on longlines around South Georgia. A third of longlines encounter sperm whales, but loss of catch due to sperm whales is insignificant when compared to that due to orcas, which interact with only 5% of longlines but can take more than half of the catch in some cases. Orca depredation around South Georgia is spatially limited and focused in areas of putative migration routes, and the impact is compounded as a result of the fishery also concentrating in those areas at those times. Understanding the seasonal behaviour of orcas and the spatial and temporal distribution of “depredation hot spots” can reduce marine mammal interactions, will improve assessment and management of the stock and contribute to increased operational efficiency of the fishery. Such information is valuable in the effort to resolve the human-mammal conflict for resources