Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila

Comparative analysis of 12 Drosophila genomes reveals insights into the evolution and mechanism of integration of R1 and R2 retrotransposons

The Three-Dimensional Structure of Cassiopeia A

We used the Spitzer Space Telescope's Infrared Spectrograph to map nearly the entire extent of Cassiopeia A between 5-40 micron. Using infrared and Chandra X-ray Doppler velocity measurements, along with the locations of optical ejecta beyond the forward shock, we constructed a 3-D model of the remnant. The structure of Cas A can be characterized into a spherical component, a tilted thick disk, and multiple ejecta jets/pistons and optical fast-moving knots all populating the thick disk plane. The Bright Ring in Cas A identifies the intersection between the thick plane/pistons and a roughly spherical reverse shock. The ejecta pistons indicate a radial velocity gradient in the explosion. Some ejecta pistons are bipolar with oppositely-directed flows about the expansion center while some ejecta pistons show no such symmetry. Some ejecta pistons appear to maintain the integrity of the nuclear burning layers while others appear to have punched through the outer layers. The ejecta pistons indicate a radial velocity gradient in the explosion. In 3-D, the Fe jet in the southeast occupies a "hole" in the Si-group emission and does not represent "overturning", as previously thought. Although interaction with the circumstellar medium affects the detailed appearance of the remnant and may affect the visibility of the southeast Fe jet, the bulk of the symmetries and asymmetries in Cas A are intrinsic to the explosion.Comment: Accepted to ApJ. 54 pages, 21 figures. For high resolution figures and associated mpeg movie and 3D PDF files, see http://homepages.spa.umn.edu/~tdelaney/pape

The X-ray Spectrum of the Vela Pulsar Resolved with Chandra

We report the results of the spectral analysis of two observations of the Vela pulsar with the Chandra X-ray observatory. The spectrum of the pulsar does not show statistically significant spectral lines in the observed 0.25-8.0 keV band. Similar to middle-aged pulsars with detected thermal emission, the spectrum consists of two distinct components. The softer component can be modeled as a magnetic hydrogen atmosphere spectrum - for the pulsar magnetic field $B=3\times 10^{12}$ G and neutron star mass $M=1.4 M_\odot$ and radius $R^\infty =13$ km, we obtain \tef^\infty =0.68\pm 0.03 MK, $L_{\rm bol}^\infty = (2.6\pm 0.2)\times 10^{32}$ erg s$^{-1}$, $d=210\pm 20$ pc (the effective temperature, bolometric luminosity, and radius are as measured by a distant observer). The effective temperature is lower than that predicted by standard neutron star cooling models. A standard blackbody fit gives $T^\infty =1.49\pm 0.04$ MK, $L_{\rm bol}^\infty=(1.5\pm 0.4)\times 10^{32} d_{250}^2$ erg s$^{-1}$ ($d_{250}$ is the distance in units of 250 pc); the blackbody temperature corresponds to a radius, $R^\infty =(2.1\pm 0.2) d_{250}$ km, much smaller than realistic neutron star radii. The harder component can be modeled as a power-law spectrum, with parameters depending on the model adopted for the soft component - $\gamma=1.5\pm 0.3$, $L_x=(1.5\pm 0.4)\times 10^{31} d_{250}^2$ erg s$^{-1}$ and $\gamma=2.7\pm 0.4$, $L_x=(4.2\pm 0.6)\times 10^{31} d_{250}^2$ erg s$^{-1}$ for the hydrogen atmosphere and blackbody soft component, respectively ($\gamma$ is the photon index, $L_x$ is the luminosity in the 0.2--8 keV band). The extrapolation of the power-law component of the former fit towards lower energies matches the optical flux at $\gamma\simeq 1.35$--1.45.Comment: Submitted to ApJ, three figures; color figure 1 can be found at http://www.xray.mpe.mpg.de/~zavlin/pub_list.htm

On the Expansion Rate, Age, and Distance of the Supernova Remnant G266.2-1.2 (Vela Jr.)

An analysis of Chandra ACIS data for two relatively bright and narrow portions of the northwestern rim of G266.2-1.2 (a.k.a. RX J0852.0-4622 or Vela Jr.) reveal evidence of a radial displacement of 2.40 +/- 0.56 arcsec between 2003 and 2008. The corresponding expansion rate (0.42 +/- 0.10 arcsec/yr or 13.6 +/- 4.2%/kyr) is about half the rate reported for an analysis of XMM-Newton data from a similar, but not identical, portion of the rim over a similar, but not identical, time interval (0.84 +/- 0.23 arcsec/yr, Katsuda et al. 2008a). If the Chandra rate is representative of the remnant as a whole, then the results of a hydrodynamic analysis suggest that G266.2-1.2 is between 2.4 and 5.1 kyr old if it is expanding into a uniform ambient medium (whether or not it was produced by a Type Ia or Type II event). If the remnant is expanding into the material shed by a steady stellar wind, then the age could be as much as 50% higher. The Chandra expansion rate and a requirement that the shock speed be greater than or equal to 1000 km/s yields a lower limit on the distance of 0.5 kpc. An analysis of previously-published distance estimates and constraints suggests G266.2-1.2 is no further than 1.0 kpc. This range of distances is consistent with the distance to the nearer of two groups of material in the Vela Molecular Ridge (0.7 +/- 0.2 kpc, Liseau et al. 1992) and to the Vel OB1 association (0.8 kpc, Eggen 1982).Comment: 30 pages, 7 figure

The Arecibo Galaxy Environments Survey - Description and Early Results

The Arecibo Galaxy Environments Survey (AGES) is a 2000-hour neutral hydrogen (HI) survey using the new Arecibo L-band Feed Array (ALFA) multibeam instrument at Arecibo Observatory. It will cover 200 square degrees of sky, sampling a range of environments from the Local Void through to the Virgo Cluster with higher sensitivity, spatial resolution and velocity resolution than previous neutral hydrogen surveys.Comment: IAU Symposium 235 - Galaxy Evolution across the Hubble Time. 3 pages (only 1 st to appear in printed proceedings), 3 figures. Uses iaus.cls. Full resolution PDF is available from http://www2.naic.edu/alfa/ealfa/AGES-IAUS235-Minchin.pdf and a PDF of the poster is available from http://www2.naic.edu/alfa/ealfa/AGES-IAU-Minchin.pd

The Arecibo Galaxy Environment Survey III: Observations Toward the Galaxy Pair NGC 7332/7339 and the Isolated Galaxy NGC 1156

Two 5 square degree regions around the NGC 7332/9 galaxy pair and the isolated galaxy NGC 1156 have been mapped in the 21-cm line of neutral hydrogen (HI) with the Arecibo L-band Feed Array out to a redshift of ~0.065$(~20,000$ km/s) as part of the Arecibo Galaxy Environment Survey. One of the aims of this survey is to investigate the environment of galaxies by identifying dwarf companions and interaction remnants; both of these areas provide the potential for such discoveries. The neutral hydrogen observations were complemented by optical and radio follow-up observations with a number of telescopes. A total of 87 galaxies were found, of which 39 (45 per cent) were previously cataloged and 15 (17 per cent) have prior redshifts. Two dwarf galaxies have been discovered in the NGC 7332 group and a single dwarf galaxy in the vicinity NGC 1156 . A parallel optical search of the area revealed one further possible dwarf galaxy near NGC 7332.Comment: 18 pages, 17 figures, uses emulateap