Cloning of terminal transferase cDNA by antibody screening

A cDNA library was prepared from a terminal deoxynucleotidyltransferase-containing thymoma in the phage vector λgt11. By screening plaques with anti-terminal transferase antibody, positive clones were identified of which some had β-galactosidase-cDNA fusion proteins identifiable after electrophoretic fractionation by immunoblotting with anti-terminal transferase antibody. The predominant class of cross-hybridizing clones was determined to represent cDNA for terminal transferase by showing that one representative clone hybridized to a 2200-nucleotide mRNA in close-matched enzyme-positive but not to enzyme-negative cells and that the cDNA selected a mRNA that translated to give a protein of the size and antigenic characteristics of terminal transferase. Only a small amount of genomic DNA hybridized to the longest available clone, indicating that the sequence is virtually unique in the mouse genome

Direct characterisation of tuneable few-femtosecond dispersive-wave pulses in the deep UV

Dispersive wave emission (DWE) in gas-filled hollow-core dielectric waveguides is a promising source of tuneable coherent and broadband radiation, but so far the generation of few-femtosecond pulses using this technique has not been demonstrated. Using in-vacuum frequency-resolved optical gating, we directly characterise tuneable 3fs pulses in the deep ultraviolet generated via DWE. Through numerical simulations, we identify that the use of a pressure gradient in the waveguide is critical for the generation of short pulses.Comment: 5 pages, 4 figure

Evaluating salt-fingering theories

Author Posting. © Sears Foundation for Marine Research, 2008. This article is posted here by permission of Sears Foundation for Marine Research for personal use, not for redistribution. The definitive version was published in Journal of Marine Research 66 (2008): 413-440, doi:10.1357/002224008787157467.The NATRE fine- and microstructure data set is revisited to test salt-finger amplitude theories. Dependences of the mixing efficiency Γ, microscale buoyancy Reynolds number Re and thermal Cox number CxT on 5-m density ratio Rρ and gradient Richardson number Ri are examined. The observed mixing efficiency is too high to be explained by linear fastest-growing fingers but can be reproduced by wavenumbers 0.5-0.9 times lower than the fastest-growing wavenumber. Constraining these fingers with a hybrid wave/finger Froude number or a finger Reynolds number cannot reproduce the observed trends with Rρ or Ri, respectively. This suggests that background shear has no influence on finger amplitudes. Constraining average amplitudes of these lower-wavenumber fingers with finger Richardson number Rif ~ 0.2 reproduces the observed dependence of Re and CxT on density ratio Rρ and Ri at all but the lowest observed density ratio (Rρ = 1.3). Separately relaxing the assumptions of viscous control, dominance of a single mode and tall narrow fingers does not explain the difference between theory and data at low Rρ for a critical Rif ~ 0.2.We gratefully acknowledge the support of the Office of Naval Research (grant N00014-04-1-0212) and Natural Sciences and Engineering Research Council of Canada

Construction and Assembly of the Wire Planes for the MicroBooNE Time Projection Chamber

In this paper we describe how the readout planes for the MicroBooNE Time Projection Chamber were constructed, assembled and installed. We present the individual wire preparation using semi-automatic winding machines and the assembly of wire carrier boards. The details of the wire installation on the detector frame and the tensioning of the wires are given. A strict quality assurance plan ensured the integrity of the readout planes. The different tests performed at all stages of construction and installation provided crucial information to achieve the successful realisation of the MicroBooNE wire planes.Comment: 24 pages, 22 figures, accepted for publication as Technical Report in JINS

High export via small particles before the onset of the North Atlantic spring bloom

Sinking organic matter in the North Atlantic Ocean transfers 1-3 Gt carbon year?1 from the surface ocean to the interior. The majority of this exported material is thought to be in form of large, rapidly sinking particles that aggregate during or after the spring phytoplankton bloom. However, recent work has suggested that intermittent water column stratification resulting in the termination of deep convection can isolate phytoplankton from the euphotic zone, leading to export of small particles. We present depth profiles of large (>0.1mm equivalent spherical diameter, ESD) and small (300m depth, leading to deep mixing of particles as deep as 600m. Subsequent re-stratification could trap these particles at depth and lead to high particle fluxes at depth without the need for aggregation (‘mixed layer pump'). Overall we suggest that pre-bloom fluxes to the mesopelagic are significant, and the role of small sinking particles requires careful consideration

High export via small particles before the onset of the North Atlantic spring bloom

Sinking organic matter in the North Atlantic Ocean transfers 1-3 Gt carbon year?1 from the surface ocean to the interior. The majority of this exported material is thought to be in form of large, rapidly sinking particles that aggregate during or after the spring phytoplankton bloom. However, recent work has suggested that intermittent water column stratification resulting in the termination of deep convection can isolate phytoplankton from the euphotic zone, leading to export of small particles. We present depth profiles of large (&gt;0.1mm equivalent spherical diameter, ESD) and small (&lt;0.1mm ESD) sinking particle concentrations and fluxes prior to the spring bloom at two contrasting sites in the North Atlantic (61°30N, 11°00W and 62°50N, 02°30W) derived from the Marine Snow Catcher and the Video Plankton Recorder. The downward flux of organic carbon via small particles ranged from 23-186 mg C m?2 d?1, often constituting the bulk of the total particulate organic carbon flux. We propose that these rates were driven by two different mechanisms: In the Norwegian Basin, small sinking particles likely reached the upper mesopelagic by disaggregation of larger, faster sinking particles. In the Iceland Basin, a storm deepened the mixed layer to &gt;300m depth, leading to deep mixing of particles as deep as 600m. Subsequent re-stratification could trap these particles at depth and lead to high particle fluxes at depth without the need for aggregation (‘mixed layer pump'). Overall we suggest that pre-bloom fluxes to the mesopelagic are significant, and the role of small sinking particles requires careful consideration. <br/

Why do models overestimate surface ozone in the Southeast United States

Ozone pollution in the Southeast US involves complex chemistry driven by emissions of anthropogenic nitrogen oxide radicals (NOx  ≡  NO + NO2) and biogenic isoprene. Model estimates of surface ozone concentrations tend to be biased high in the region and this is of concern for designing effective emission control strategies to meet air quality standards. We use detailed chemical observations from the SEAC4RS aircraft campaign in August and September 2013, interpreted with the GEOS-Chem chemical transport model at 0.25°  ×  0.3125° horizontal resolution, to better understand the factors controlling surface ozone in the Southeast US. We find that the National Emission Inventory (NEI) for NOx from the US Environmental Protection Agency (EPA) is too high. This finding is based on SEAC4RS observations of NOx and its oxidation products, surface network observations of nitrate wet deposition fluxes, and OMI satellite observations of tropospheric NO2 columns. Our results indicate that NEI NOx emissions from mobile and industrial sources must be reduced by 30–60 %, dependent on the assumption of the contribution by soil NOx emissions. Upper-tropospheric NO2 from lightning makes a large contribution to satellite observations of tropospheric NO2 that must be accounted for when using these data to estimate surface NOx emissions. We find that only half of isoprene oxidation proceeds by the high-NOx pathway to produce ozone; this fraction is only moderately sensitive to changes in NOx emissions because isoprene and NOx emissions are spatially segregated. GEOS-Chem with reduced NOx emissions provides an unbiased simulation of ozone observations from the aircraft and reproduces the observed ozone production efficiency in the boundary layer as derived from a regression of ozone and NOx oxidation products. However, the model is still biased high by 6 ± 14 ppb relative to observed surface ozone in the Southeast US. Ozonesondes launched during midday hours show a 7 ppb ozone decrease from 1.5 km to the surface that GEOS-Chem does not capture. This bias may reflect a combination of excessive vertical mixing and net ozone production in the model boundary layer