Comparative mapping of a new repetitive DNA sequence and chromosome region-specific probes unveiling rearrangements in an Amazonian frog complex

The frog species Physalaemus ephippifer exists in the Amazonian region and harbors heteromorphic Z and W chromosomes. A genetic lineage closely related to this species was recognized based on its mitochondrial DNA and RADseq-style markers, but its taxonomic status is still unclear and has been referred to as Lineage 1 of “P. cuvieri”. The heteromorphic sex chromosomes found in P. ephippifer are not present in this lineage and which of its chromosome pairs is homologous to the sex chromosomes of P. ephippifer remain to be elucidated as well as the role of such a karyotypic divergence in the evolution of these frogs. Here, we described a new family of repetitive DNA and used its chromosomal sites along with the markers detected by a probe constructed from the microdissected segment of the Z chromosome of P. ephippifer to infer chromosomal homology. We also analyzed an unnamed species that is considered to be the sister group of the clade composed of Lineage 1 of “P. cuvieri” and P. ephippifer. Our results suggest that complex rearrangements involving the chromosomes that were inferred to be homeologous to the sex chromosomes of P. ephippifer have occurred during the divergence of this group of frogs.La grenouille Physalaemus ephippifer est présente en Amazonie et elle comporte des chromosomes hétéromorphes Z et W. Une lignée génétiquement proche a été identifiée sur la base de son ADN mitochondrial et de marqueurs de type RADseq, mais sa taxonomie demeure incertaine tout en étant nommée Lignée 1 du « P. cuvieri ». Les chromosomes sexuels hétéromorphes présents chez le P. ephippifer ne le sont pas au sein de cette lignée et il demeure inconnu laquelle des paires de chromosomes est homologue aux chromosomes sexuels du P. ephippifer de même que le rôle d’une telle divergence caryotypique dans l’évolution de ces grenouilles. Dans ce travail les auteurs décrivent une nouvelle famille d’ADN répété et ils emploient les sites chromosomiques de ces séquences ainsi que des marqueurs détectés au moyen d’une sonde dérivée d’un segment (obtenu par microdissection) du chromosome Z du P. ephippifer pour déterminer l’homologie chromosomique. Les auteurs ont également analysé une espèce sans nom qui est considérée comme un groupe proche du clade composé de la Lignée 1 du « P. cuvieri » et du P. ephippifer. Les résultats suggèrent que des réarrangements complexes, impliquant les chromosomes déterminés comme étant homéologues des chromosomes sexuels du P. ephippifer, seraient survenus au cours de la divergence au sein de ce groupe de grenouilles.Fil: Gatto, Kaleb Pretto. Universidade Estadual Do Campinas. Instituto de Biologia. Departamento de Biologia Estructural y Funcional. Laboratorio de Estudios Cromossomicos.; BrasilFil: Souza, Lucas H.B.. Universidade Estadual Do Campinas. Instituto de Biologia. Departamento de Biologia Estructural y Funcional. Laboratorio de Estudios Cromossomicos.; BrasilFil: Nascimento, Juliana. Universidade Estadual Do Campinas. Instituto de Biologia. Departamento de Biologia Estructural y Funcional. Laboratorio de Estudios Cromossomicos.; BrasilFil: Suarez, Pablo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Biología Subtropical. Instituto de Biología Subtropical - Nodo Puerto Iguazú | Universidad Nacional de Misiones. Instituto de Biología Subtropical. Instituto de Biología Subtropical - Nodo Puerto Iguazú; ArgentinaFil: Lourenço, Luciana Bolsoni. Universidade Estadual Do Campinas. Instituto de Biologia. Departamento de Biologia Estructural y Funcional. Laboratorio de Estudios Cromossomicos.; Brasi

Oligothiophene/graphene supramolecular ensembles managing light induced processes: Preparation, characterization, and femtosecond transient absorption studies leading to charge‐separation

Advances  in  organic  synthetic  chemistry  combined  with  the  exceptional  electronic  properties  of  carbon  allotropes,  particularly graphene, is the basis to design and fabricate novel electron donor-­‐acceptor ensembles with desired properties for technological applications. Thiophene-­‐based materials, mainly thiophene-­‐containing polymers, are known for  their  notable  electronic  properties.  In  this  frame  moving  from  polymer  to  oligomer  forms,  new  fundamental  information would help to the better understanding of their electrochemical and photophysical properties. Furthermore, a successful  combination  of  their  electronic  properties  with  those  of  graphene  is  a  challenging  goal.  In  this  work  two  oligothiophene compounds consists of three and nine thiophene-­‐rings, abbreviated as 3T and 9T, respectively, were synthesized and noncovalently associated with liquid phase exfoliated few-­‐layered graphene sheets (abbreviated as eG), forming donor-­‐acceptor 3T/eG and 9T/eG nanoensembes. Markedly, intra-­‐ensemble electronic interactions between the two  components  in  the  ground  and  excited  states  were  evaluated  with  the  aid  of  UV-­‐Vis  and  photoluminescence  spectroscopy. Furthermore, redox assays revealed an one-­‐electron oxidation of 3T accompanied by one-­‐electron reduction due  to  eG  in  3T/eG,  while  two  reversible  one-­‐electron  oxidations  of  9T  accompanied  by  one-­‐electron  reduction  of  eG  9T/eG. The electrochemical band gap for 3T/eG and 9T/eG ensembles were calculated and verified that the negative free-­‐energy change for the charge-­‐separated state of 3T/eG and 9T/eG via the singlet excited state of 3T and 9T respectively, were  thermodynamically  favorable.  Finally,  results  of  transient  pump-­‐probe  spectroscopic  studies  at  the  femtosecond  time scale were supportive of charge transfer type interactions in the 3T/eG and 9T/eG ensembles. The estimated rates for intra-­‐ensemble charge separation were found to be 9.52 x 109 s-­‐1 and 2.2 x 1011 s-­‐1, respectively, for 3T/eG and 9T/eG in THF, revealing moderate to ultrafast photoinduced events in the oligothiophene/graphene supramolecular ensemble

Hydroalcoholic extracts of Vellozia squamata: study of its nanoemulsions for pharmaceutical or cosmetic applications

AbstractSome species of plants are notable for the wide range of biologically active constituents in their tissues. Chemical and pharmacological studies of Vellozia squamata Pohl, Velloziaceae, popularly known in Brasil as “canela-de-ema” are scarce, but showed the presence of di-and triterpenoid that may be of scientii c interest. In the present study the hydroalcoholic extracts from leafs and stems of V. squamata were submitted to phytochemical prospection to identify the principal groups of constituents, and the antioxidant activity was determined by DPPH method. The hydroethanolic extracts presented higher antioxidant activity. Thus, nanoemulsion formulations were prepared using the method of phase inversion. Accelerated stability tests, such as heat stress and centrifugation were made, and physical and chemical properties of the nanoemulsions were established. Stable formulations were obtained from both extracts from leafs and stems. By the results was possible to establish the potential application of hydroalcoholic extracts from V. squamata in development of products with antioxidant properties and demonstrate a promising pharmaceutical produc

Comparison of the reliability of multifocal visual evoked cortical potentials generated by pattern reversal and pattern pulse stimulation

This study compared the effectiveness of the multifocal visual evoked cortical potentials (mfVEP) elicited by pattern pulse stimulation with that of pattern reversal in producing reliable responses (signal-to-noise ratio >1.359). Participants were 14 healthy subjects. Visual stimulation was obtained using a 60-sector dartboard display consisting of 6 concentric rings presented in either pulse or reversal mode. Each sector, consisting of 16 checks at 99% Michelson contrast and 80 cd/m² mean luminance, was controlled by a binary m-sequence in the time domain. The signal-to-noise ratio was generally larger in the pattern reversal than in the pattern pulse mode. The number of reliable responses was similar in the central sectors for the two stimulation modes. At the periphery, pattern reversal showed a larger number of reliable responses. Pattern pulse stimuli performed similarly to pattern reversal stimuli to generate reliable waveforms in R1 and R2. The advantage of using both protocols to study mfVEP responses is their complementarity: in some patients, reliable waveforms in specific sectors may be obtained with only one of the two methods. The joint analysis of pattern reversal and pattern pulse stimuli increased the rate of reliability for central sectors by 7.14% in R1, 5.35% in R2, 4.76% in R3, 3.57% in R4, 2.97% in R5, and 1.78% in R6. From R1 to R4 the reliability to generate mfVEPs was above 70% when using both protocols. Thus, for a very high reliability and thorough examination of visual performance, it is recommended to use both stimulation protocols

Lessons from the terra preta de índios of the amazon region for the utilisation of charcoal for soil amendment

peer-reviewedThe potential of charcoal and of partially combusted organic waste to mimic the soil organic matter of the Terras Pretas de Índios (Amazonian Dark Earths) from the Amazon Region is discussed. These materials serve as soil conditioners and as sequesterers of carbon in recalcitrant and in reactive forms. Studies carried out by Brazilian and by international groups have contributed to the emergence of an awareness of the compositions and of the uses of these materials. In this contribution we report on chemical studies that are leading to the development of a scientific and technological awareness, and of innovations that will have value in finding novel uses in applications to soil of chars from organic wastes such as those from the biofuel industry, and from metallurgical and various coal plant residues

Measurement of the p-pbar -> Wgamma + X cross section at sqrt(s) = 1.96 TeV and WWgamma anomalous coupling limits

The WWgamma triple gauge boson coupling parameters are studied using p-pbar -> l nu gamma + X (l = e,mu) events at sqrt(s) = 1.96 TeV. The data were collected with the DO detector from an integrated luminosity of 162 pb^{-1} delivered by the Fermilab Tevatron Collider. The cross section times branching fraction for p-pbar -> W(gamma) + X -> l nu gamma + X with E_T^{gamma} > 8 GeV and Delta R_{l gamma} > 0.7 is 14.8 +/- 1.6 (stat) +/- 1.0 (syst) +/- 1.0 (lum) pb. The one-dimensional 95% confidence level limits on anomalous couplings are -0.88 < Delta kappa_{gamma} < 0.96 and -0.20 < lambda_{gamma} < 0.20.Comment: Submitted to Phys. Rev. D Rapid Communication

Measurement of the ttbar Production Cross Section in ppbar Collisions at sqrt{s} = 1.96 TeV using Kinematic Characteristics of Lepton + Jets Events

We present a measurement of the top quark pair ttbar production cross section in ppbar collisions at a center-of-mass energy of 1.96 TeV using 230 pb**{-1} of data collected by the DO detector at the Fermilab Tevatron Collider. We select events with one charged lepton (electron or muon), large missing transverse energy, and at least four jets, and extract the ttbar content of the sample based on the kinematic characteristics of the events. For a top quark mass of 175 GeV, we measure sigma(ttbar) = 6.7 {+1.4-1.3} (stat) {+1.6- 1.1} (syst) +/-0.4 (lumi) pb, in good agreement with the standard model prediction.Comment: submitted to Phys.Rev.Let

Measurement of the ttbar Production Cross Section in ppbar Collisions at sqrt(s)=1.96 TeV using Lepton + Jets Events with Lifetime b-tagging

We present a measurement of the top quark pair ($t\bar{t}$) production cross section ($\sigma_{t\bar{t}}$) in $p\bar{p}$ collisions at $\sqrt{s}=1.96$ TeV using 230 pb$^{-1}$ of data collected by the D0 experiment at the Fermilab Tevatron Collider. We select events with one charged lepton (electron or muon), missing transverse energy, and jets in the final state. We employ lifetime-based b-jet identification techniques to further enhance the $t\bar{t}$ purity of the selected sample. For a top quark mass of 175 GeV, we measure $\sigma_{t\bar{t}}=8.6^{+1.6}_{-1.5}(stat.+syst.)\pm 0.6(lumi.)$ pb, in agreement with the standard model expectation.Comment: 7 pages, 2 figures, 3 tables Submitted to Phys.Rev.Let