A climate change integrated assessment of whale watching in Macaronesia

As alterações climáticas estão a decorrer de forma rápida, generalizada e intensa, com impactos graves, interligados e irreversíveis nos sistemas naturais e humanos. No oceano, os efeitos das alterações climáticas estão a afetar fortemente os ecossistemas marinhos, principalmente através do aumento da temperatura, da acidificação, e da desoxigenação. Os ecossistemas marinhos proporcionam um conjunto de serviços de aprovisionamento, de regulação, culturais e de suporte. Estes serviços são particularmente relevantes em estados costeiros e insulares, onde se prevê que os impactos das alterações climáticas tenham maiores consequências, como a subida do nível do mar, a erosão costeira ou o aumento da frequência e intensidade de eventos climáticos extremos. O turismo é uma das principais atividades socioeconómicas desenvolvida em estados insulares a nível mundial, nomeadamente na bioregião da Macaronésia, onde a observação de cetáceos é uma das principais atividades. No entanto, os impactos das alterações climáticas na observação de cetáceos são largamente desconhecidos, ao mesmo tempo que faltam estudos que integrem os impactos socioeconómicos e ecológicos das alterações climáticas na atividade. Por outro lado, há a necessidade de apoiar os decisores na conservação da biodiversidade, identificando os esforços de gestão necessários e as lacunas de conhecimento a preencher. O principal objetivo da presente dissertação é, assim, realizar uma avaliação integrada da vulnerabilidade biológica e socioeconómica da atividade de observação de cetáceos às alterações climáticas, por forma a apoiar a sua sustentabilidade a longo prazo na bioregião da Macaronésia. As três principais perguntas de investigação definidas para responder a este objetivo são: (i) Qual a vulnerabilidade ecológica das espécies de cetáceos às alterações climáticas? (ii) Qual a vulnerabilidade socioeconómica da observação de cetáceos às alterações climáticas? (iii) Como é que a gestão da atividade de observação de cetáceos pode ser apoiada face às alterações climáticas?Climate change is occurring at a rapid, widespread, and intensifying rate with natural and human systems witnessing increasingly severe, interconnected and often irreversible impacts. In the ocean, climate change is projected to strongly affect marine ecosystems mainly through increases in ocean temperature, acidification, and deoxygenation. Marine ecosystems provide essential benefits to society through several regulating, provisioning, cultural, and supporting services. These services are particularly relevant in island and coastal states, where the impacts of climate change (such as sea level rise, coastline erosion, and increase in frequency and intensity of extreme weather events) are expected to be most severe. Tourism is one of the main socio-economic activities on islands worldwide, namely in the bioregion of Macaronesia, where whale watching is one of the main activities. The impacts of climate change in whale watching are largely unknown, and studies that integrate the ecological and socio-economic impacts of climate change on the activity are missing. Concurrently, there is the need to provide conservation managers and practitioners with sound scientific knowledge in order to support effective and appropriate management efforts. The main goal of this dissertation is to assess the integrated biological and socio-economic vulnerability of whale watching to climate change to support the long-term sustainability of the activity in the Macaronesia bioregion. The three main research questions defined to achieve this goal are: (i) What is the ecological vulnerability of cetacean species to climate change? (ii) What is the socio-economic vulnerability of whale watching to climate change? (iii) How can the management of whale watching be supported under climate change

Description and seasonal detection of two potential whale calls recorded in the Indian Ocean

Unidentified acoustic signals are recorded by hydrophones placed in the world's oceans. Some of these sounds are suspected to originate from marine mammals. In this study, two acoustic signals recorded by two arrays at Diego Garcia in the northern Indian Ocean are described. Data were available between January 2002 and December 2003. Signals were detected manually using long-term spectral average plots. Time and frequency measurements were taken from a sample of both signals. The first unidentified signal [Diego Garcia Downsweep (DGD)] consisted of two main components. The mean frequency range of the entire signal was 19.3-45.0 Hz, with a mean duration of 36.5 s (n = 22). Detections of DGD at the northern array peaked in the austral summer, though detections at the southern array peaked during winter and spring. The second unidentified signal [Diego Garcia Croak (DGC)] consisted of one component with a mean frequency range of 16.9-49.6 Hz. The mean duration of the signal was 13.1 s (n = 10). Detections of DGC did not follow a clear seasonal pattern. These signals followed characteristics of biological sources, suggesting that they could be whale calls. Fin whale calls and possible blue whales D-calls were also identified in the data.Publisher PDFPeer reviewe

Efeito adicional do exercício anaeróbio localizado na região abdominal num programa de exercício

A obesidade é uma causa de incapacidade e morte pre matura, sendo fundamental a sua prevenção primária, que inclui medidas como a prática de exercício físico. No entanto, existe controvérsia relativamente ao tipo, intensidade e duração mais efetivos. Verificar se o exercício anaeróbio localizado na região abdominal tem efeito adicional ao exercício aeróbio na gordura abdominal, níveis de colesterol total e triglicerídeos, e secundariamente, avaliar a eficácia do treino combinado na resistência muscular abdominal.info:eu-repo/semantics/publishedVersio

Methodological considerations in assessing interlimb coordination on poststroke gait: a scoping review of biomechanical approaches and outcomes

To identify and summarize biomechanical assessment approaches in interlimb coordination on poststroke gait. Interlimb coordination involves complex neurophysiological mechanisms that can be expressed through the biomechanical output. The deepening of this concept would have a significant contribution in gait rehabilitation in patients with an asymmetric neurological impairment as poststroke adults. Poststroke adults (>19 years old), with assessment of interlimb coordination during gait, in an open context, according to the Population, Concept, Context framework. A literature search was performed in PubMed, Web of Science™, Scopus, and gray literature in Google Scholar™, according to the PRISMA-ScR recommendations. Studies written in Portuguese or English language and published between database inception and 14 November 2021 were included. Qualitative studies, conference proceedings, letters, and editorials were excluded. The main conceptual categories were “author/year”, “study design”, “participant’s characteristics”, “walking conditions”, “instruments” and “outcomes”. The search identified 827 potentially relevant studies, with a remaining seven fulfilling the established criteria. Interlimb coordination was assessed during walking in treadmill (n = 3), overground (n = 3) and both (n = 1). The instruments used monitored electromyography (n = 2), kinetics (n = 2), and kinematics (n = 4) to assess spatiotemporal parameters (n = 4), joint kinematics (n = 2), anteroposterior ground reaction forces (n = 2), and electromyography root mean square (n = 2) outcomes. These outcomes were mostly used to analyze symmetry indices or ratios, to calculate propulsive impulse and external mechanical power produced on the CoM, as well as antagonist coactivation. Assessment of interlimb coordination during gait is important for consideration of natural auto-selected overground walking, using kinematic, kinetic, and EMG instruments. These allow for the collection of the main biomechanical outcomes that could contribute to improve better knowledge of interlimb coordination assessment in poststroke patients.info:eu-repo/semantics/publishedVersio

Repeatability and temporal consistency of lower limb biomechanical variables expressing interlimb coordination during the double-support phase in people with and without stroke sequelae

Reliable biomechanical methods to assess interlimb coordination during the double-support phase in post-stroke subjects are needed for assessing movement dysfunction and related variability. The data obtained could provide a significant contribution for designing rehabilitation programs and for their monitorisation. The present study aimed to determine the minimum number of gait cycles needed to obtain adequate values of repeatability and temporal consistency of lower limb kinematic, kinetic, and electromyographic parameters during the double support of walking in people with and without stroke sequelae. Eleven post-stroke and thirteen healthy participants performed 20 gait trials at self-selected speed in two separate moments with an interval between 72 h and 7 days. The joint position, the external mechanical work on the centre of mass, and the surface electromyographic activity of the tibialis anterior, soleus, gastrocnemius medialis, rectus femoris, vastus medialis, biceps femoris, and gluteus maximus muscles were extracted for analysis. Both the contralesional and ipsilesional and dominant and non-dominant limbs of participants with and without stroke sequelae, respectively, were evaluated either in trailing or leading positions. The intraclass correlation coefficient was used for assessing intra-session and inter-session consistency analysis. For most of the kinematic and the kinetic variables studied in each session, two to three trials were required for both groups, limbs, and positions. The electromyographic variables presented higher variability, requiring, therefore, a number of trials ranging from 2 to >10. Globally, the number of trials required inter-session ranged from 1 to >10 for kinematic, from 1 to 9 for kinetic, and 1 to >10 for electromyographic variables. Thus, for the double support analysis, three gait trials were required in order to assess the kinematic and kinetic variables in cross-sectional studies, while for longitudinal studies, a higher number of trials (>10) were required for kinematic, kinetic, and electromyographic variables.info:eu-repo/semantics/publishedVersio

Spinal cord RNA-seq data after a baclofen treatment in mice with a spinal cord injury

Spinal cord injury (SCI) leads to severe functional deficits. Currently, there are no available pharmacological treatments to promote neurological recovery in SCI patients. Recent work from our group has shown that a baclofen treatment can promote functional recovery after a compression SCI in mice [1]. Here, we provide transcriptomic (RNA-seq) data from adult mouse spinal cords collected 7 days after a compression SCI and baclofen (vs vehicle) administration. The Illumina NovaSeq 6000 platform was used to generate the raw transcriptomic data. In addition, we also present bioinformatic analyses including differential gene expression analysis, enrichment analyses for various functional annotations (gene ontology, KEGG and BioCarta pathways or InterPro domains) and transcription factor targets. The raw RNA-seq data has been uploaded to the NCBI Sequence Read Archive (SRA) database (Bioproject ID PRJNA886048). The data generated from the bioinformatic analyses is contained within the articleThis work was supported by the Wings for Life Spinal Cord Research Foundation (grant reference WFL-ES-03/19), the Portuguese Foundation for Science and Technology (FCT) EXPL/MED-FAR/1529/2021 to N. de Sousa and through the Scientific Employment Stimulus to N. Silva and S. Monteiro (CEECIND/04794/2017 and CEECIND/01902/2017) and Grant PID2020-115121GB-I00 funded by MCIN/AEI/10.13039/501100011033 to A. Barreiro-IglesiasS

Quinone oxidoreductase from Staphylococcus aureus

Funding Information: Helena Gaspar is acknowledged for the HPLC analyses and Bruno Victor for advice on modelling. F.M.S. and M.S.S. are recipients of fellowships by Fundação para a Ciência e a Tecnologia (PD/BD/128213/2016 and PD/BD/128202/2016, respectively, both within the scope of the PhD program Molecular Biosciences PD/00133/2012). A.B. is recipient of a fellowship by Fundação para a Ciência e a Tecnologia UI/BD/153052/2022. The work was funded by Fundação para a Ciência e a Tecnologia ( PTDC/BIA-BQM/2599/2021 to M.M.P). The project was further supported by UIDB/04046/2020 and UIDP/04046/2020 Centre grants from FCT , Portugal (to BioISI), by LISBOA-01-0145-FEDER-007660 cofunded by FEDER through COMPETE2020-POCI and by Fundação para a Ciência e a Tecnologia and by UIDB/04612/2020 and UIDP/04612/2020 research unit grants from FCT (to Mostmicro). The NMR spectrometers are part of the National NMR Network (PTNMR) and are supported by Infrastructure Project N° 022161 (co-financed by FEDER through COMPETE 2020, POCI, and PORL and FCT through PIDDAC). Funding Information: Helena Gaspar is acknowledged for the HPLC analyses and Bruno Victor for advice on modelling. F.M.S. and M.S.S. are recipients of fellowships by Fundação para a Ciência e a Tecnologia (PD/BD/128213/2016 and PD/BD/128202/2016, respectively, both within the scope of the PhD program Molecular Biosciences PD/00133/2012). A.B. is recipient of a fellowship by Fundação para a Ciência e a Tecnologia UI/BD/153052/2022. The work was funded by Fundação para a Ciência e a Tecnologia (PTDC/BIA-BQM/2599/2021 to M.M.P). The project was further supported by UIDB/04046/2020 and UIDP/04046/2020 Centre grants from FCT, Portugal (to BioISI), by LISBOA-01-0145-FEDER-007660 cofunded by FEDER through COMPETE2020-POCI and by Fundação para a Ciência e a Tecnologia and by UIDB/04612/2020 and UIDP/04612/2020 research unit grants from FCT (to Mostmicro). The NMR spectrometers are part of the National NMR Network (PTNMR) and are supported by Infrastructure Project N° 022161 (co-financed by FEDER through COMPETE 2020, POCI, and PORL and FCT through PIDDAC). Publisher Copyright: © 2022 The Author(s)Staphylococcus aureus is an opportunistic pathogen and one of the most frequent causes for community acquired and nosocomial bacterial infections. Even so, its energy metabolism is still under explored and its respiratory enzymes have been vastly overlooked. In this work, we unveil the dihydroorotate:quinone oxidoreductase (DHOQO) from S. aureus, the first example of a DHOQO from a Gram-positive organism. This protein was shown to be a FMN containing menaquinone reducing enzyme, presenting a Michaelis-Menten behaviour towards the two substrates, which was inhibited by Brequinar, Leflunomide, Lapachol, HQNO, Atovaquone and TFFA with different degrees of effectiveness. Deletion of the DHOQO coding gene (Δdhoqo) led to lower bacterial growth rates, and effected in cell morphology and metabolism, most importantly in the pyrimidine biosynthesis, here systematized for S. aureus MW2 for the first time. This work unveils the existence of a functional DHOQO in the respiratory chain of the pathogenic bacterium S. aureus, enlarging the understanding of its energy metabolism.publishersversionpublishe

An apoplastic fluid extraction method for the characterization of grapevine leaves proteome and metabolome from a single sample

The analysis of complex biological systems keeps challenging researchers. The main goal of systems biology is to decipher interactions within cells, by integrating datasets from large scale analytical approaches including transcriptomics, proteomics and metabolomics andmore specialized ‘OMICS’ such as epigenomics and lipidomics. Studying different cellular compartments allows a broader understanding of cell dynamics. Plant apoplast, the cellular compartment external to the plasma membrane including the cell wall, is particularly demanding to analyze. Despite our knowledge on apoplast involvement on several processes from cell growth to stress responses, its dynamics is still poorly known due to the lack of efficient extraction processes adequate to each plant system.Analyzing woody plants such as grapevine raises even more challenges. Grapevine is among the most important fruit crops worldwide and awider characterization of its apoplast is essential for a deeper understanding of its physiology and cellular mechanisms. Here, we describe, for the first time, a vacuum-infiltrationcentrifugationmethod that allows a simultaneous extraction of grapevine apoplastic proteins and metabolites from leaves on a single sample, compatible with high-throughput mass spectrometry analyses. The extracted apoplast from two grapevine cultivars, Vitis vinifera cv ‘Trincadeira’ and ‘Regent’, was directly used for proteomics and metabolomics analysis. The proteome was analyzed by nanoLC-MS/MS and more than 700 common proteinswere identified, with highly diverse biological functions. The metabolome profile through FT-ICR-MS allowed the identification of 514 unique putative compounds revealing a broad spectrum of molecular classesinfo:eu-repo/semantics/publishedVersio