Artifacts at 4.5 and 8.0 um in Short Wavelength Spectra from the Infrared Space Observatory

Spectra from the Short Wavelength Spectrometer (SWS) on ISO exhibit artifacts at 4.5 and 8 um. These artifacts appear in spectra from a recent data release, OLP 10.0, as spurious broad emission features in the spectra of stars earlier than ~F0, such as alpha CMa. Comparison of absolutely calibrated spectra of standard stars to corresponding spectra from the SWS reveals that these artifacts result from an underestimation of the strength of the CO and SiO molecular bands in the spectra of sources used as calibrators by the SWS. Although OLP 10.0 was intended to be the final data release, these findings have led to an additional release addressing this issue, OLP 10.1, which corrects the artifacts.Comment: 14 pages, AASTex, including 5 figures. Accepted by ApJ Letter

Nanotube field of C60 molecules in carbon nanotubes: atomistic versus continuous tube approach

We calculate the van der Waals energy of a C60 molecule when it is encapsulated in a single-walled carbon nanotube with discrete atomistic structure. orientational degrees of freedom and longitudinal displacements of the molecule are taken into account, and several achiral and chiral carbon nanotubes are considered. A comparison with earlier work where the tube was approximated by a continuous cylindrical distribution of carbon atoms is made. We find that such an approximation is valid for high and intermediate tube radii; for low tube radii, minor chirality effects come into play. Three molecular orientational regimes are found when varying the nanotube radius.Comment: 14 pages, 9 figures, accepted for publication in Phys. Rev.

Spitzer Infrared Spectrograph Observations of M, L, and T Dwarfs

We present the first mid-infrared spectra of brown dwarfs, together with observations of a low-mass star. Our targets are the M3.5 dwarf GJ 1001A, the L8 dwarf DENIS-P J0255-4700, and the T1/T6 binary system epsilon Indi Ba/Bb. As expected, the mid-infrared spectral morphology of these objects changes rapidly with spectral class due to the changes in atmospheric chemistry resulting from their differing effective temperatures and atmospheric structures. By taking advantage of the unprecedented sensitivity of the Infrared Spectrograph on the Spitzer Space Telescope we have detected the 7.8 micron methane and 10 micron ammonia bands for the first time in brown dwarf spectra.Comment: 4 pages, 2 figure

Moderate Resolution Spitzer Infrared Spectrograph (IRS) Observations of M, L, and T Dwarfs

We present 10 - 19 um moderate resolution spectra of ten M dwarfs, one L dwarf, and two T dwarf systems obtained with the Infrared Spectrograph (IRS) onboard the Spitzer Space Telescope. The IRS allows us to examine molecular spectroscopic features/lines at moderate spectral resolution in a heretofore untapped wavelength regime. These R~600 spectra allow for a more detailed examination of clouds, non-equilibrium chemistry, as well as the molecular features of H2O, NH3, and other trace molecular species that are the hallmarks of these objects. A cloud-free model best fits our mid-infrared spectrum of the T1 dwarf epsilon Indi Ba, and we find that the NH3 feature in epsilon Indi Bb is best explained by a non-equilibrium abundance due to vertical transport in its atmosphere. We examined a set of objects (mostly M dwarfs) in multiple systems to look for evidence of emission features, which might indicate an atmospheric temperature inversion, as well as trace molecular species; however, we found no evidence of either.Comment: 19 pages, 7 figures, accepted ApJ 1/12/0

PAH emission from Herbig AeBe stars

We present spectra of a sample of Herbig Ae and Be (HAeBe) stars obtained with the Infrared Spectrograph on the Spitzer Space Telescope. All but one of the Herbig stars show emission from polycyclic aromatic hydrocarbons (PAHs) and seven of the spectra show PAH emission, but no silicate emission at 10 microns. The central wavelengths of the 6.2, 7.7--8.2, and 11.3 micron emission features decrease with stellar temperature, indicating that the PAHs are less photo-processed in cooler radiation fields. The apparent low level of photo processing in HAeBe stars, relative to other PAH emission sources, implies that the PAHs are newly exposed to the UV-optical radiation fields from their host stars. HAeBe stars show a variety of PAH emission intensities and ionization fractions, but a narrow range of PAH spectral classifications based on positions of major PAH feature centers. This may indicate that, regardless of their locations relative to the stars, the PAH molecules are altered by the same physical processes in the proto-planetary disks of intermediate-mass stars. Analysis of the mid-IR spectral energy distributions indicates that our sample likely includes both radially flared and more flattened/settled disk systems, but we do not see the expected correlation of overall PAH emission with disk geometry. We suggest that the strength of PAH emission from HAeBe stars may depend not only on the degree of radial flaring, but also on the abundance of PAHs in illuminated regions of the disks and possibly on the vertical structure of the inner disk as well.Comment: 52 pages, 12 figure

CASSIS: The Cornell Atlas of Spitzer/Infrared Spectrograph Sources. II. High-resolution observations

The Infrared Spectrograph (IRS) on board the Spitzer Space Telescope observed about 15,000 objects during the cryogenic mission lifetime. Observations provided low-resolution (R~60-127) spectra over ~5-38um and high-resolution (R~600) spectra over ~10-37um. The Cornell Atlas of Spitzer/IRS Sources (CASSIS) was created to provide publishable quality spectra to the community. Low-resolution spectra have been available in CASSIS since 2011, and we present here the addition of the high-resolution spectra. The high-resolution observations represent approximately one third of all staring observations performed with the IRS instrument. While low-resolution observations are adapted to faint objects and/or broad spectral features (e.g., dust continuum, molecular bands), high-resolution observations allow more accurate measurements of narrow features (e.g., ionic emission lines) as well as a better sampling of the spectral profile of various features. Given the narrow aperture of the two high-resolution modules, cosmic ray hits and spurious features usually plague the spectra. Our pipeline is designed to minimize these effects through various improvements. A super sampled point-spread function was created in order to enable the optimal extraction in addition to the full aperture extraction. The pipeline selects the best extraction method based on the spatial extent of the object. For unresolved sources, the optimal extraction provides a significant improvement in signal-to-noise ratio over a full aperture extraction. We have developed several techniques for optimal extraction, including a differential method that eliminates low-level rogue pixels (even when no dedicated background observation was performed). The updated CASSIS repository now includes all the spectra ever taken by the IRS, with the exception of mapping observations

Neurologic phenotype of Schimke immuno-osseous dysplasia and neurodevelopmental expression of SMARCAL1

Schimke immuno-osseous dysplasia (OMIM 242900) is an uncommon autosomal-recessive multisystem disease caused by mutations in SMARCAL1 (swi/snf-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a-like 1), a gene encoding a putative chromatin remodeling protein. Neurologic manifestations identified to date relate to enhanced atherosclerosis and cerebrovascular disease. Based on a clinical survey, we determined that half of Schimke immuno-osseous dysplasia patients have a small head circumference, and 15% have social, language, motor, or cognitive abnormalities. Postmortem examination of 2 Schimke immuno-osseous dysplasia patients showed low brain weights and subtle brain histologic abnormalities suggestive of perturbed neuron-glial migration such as heterotopia, irregular cortical thickness, incomplete gyral formation, and poor definition of cortical layers. We found that SMARCAL1 is highly expressed in the developing and adult mouse and human brain, including neural precursors and neuronal lineage cells. These observations suggest that SMARCAL1 deficiency may influence brain development and function in addition to its previously recognized effect on cerebral circulation

Gas hydrate measurements at Hydrate Ridge using Raman spectroscopy

Author Posting. © Elsevier B.V., 2007. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 71: 2947-2959, doi:10.1016/j.gca.2007.03.032.Oceanic gas hydrates have been measured near the seafloor for the first time using a seagoing Raman spectrometer at Hydrate Ridge, Oregon, where extensive layers of hydrates have been found to occur near the seafloor. All of the hydrates analyzed were liberated from the upper meter of the sediment column near active gas venting sites in water depths of 770-780 m. Hydrate properties, such as structure and composition, were measured with significantly less disturbance to the sample than would be realized with core recovery. The natural hydrates measured were sI, with methane as the predominant guest component, and minor/trace amounts of hydrogen sulfide present in three of the twelve samples measured. Methane large-to-small cage occupancy ratios of the hydrates varied from 1.01 to 1.30, in good agreement with measurements of laboratory synthesized and recovered natural hydrates. Although the samples visually appeared to be solid, varying quantities of free methane gas were detected, indicating the presence of occluded gas a hydrate bubble fabric and/or partial hydrate dissociation in the under-saturated seawater.This work was supported through National Undersea Research Program grant UAF03-0098. DORISS and PUP development was funded by a grant to MBARI from the David and Lucile Packard Foundation

Mid-infrared spectra of PAH emission in Herbig AeBe stars

We present spectra of four Herbig AeBe stars obtained with the Infrared Spectrograph (IRS). on the Spitzer Space Telescope. All four of the sources show strong emission from polycyclic aromatic hydrocarbons (PAHs), with the 6.2 um emission feature shifted to 6.3 um and the strongest C-C skeletal-mode feature occuring at 7.9 um instead of at 7.7 um as is often seen. Remarkably, none of the four stars have silicate emission. The strength of the 7.9 um feature varies with respect to the 11.3 um feature among the sources, indicating that we have observed PAHs with a range of ionization fractions. The ionization fraction is higher for systems with hotter and brighter central stars. Two sources, HD 34282 and HD 169142, show emission features from aliphatic hydrocarbons at 6.85 and 7.25 um. The spectrum of HD 141569 shows a previously undetected emission feature at 12.4 um which may be related to the 12.7 um PAH feature. The spectrum of HD 135344, the coolest star in our sample, shows an unusual profile in the 7-9 um region, with the peak emission to the red of 8.0 um and no 8.6 um PAH feature.Comment: Accepted by ApJ 23 June, 2005, 8 pages (emulateapj), 5 figures (3 in color