Habitat light sets the boundaries for the rapid evolution of cichlid fish vision, while sexual selection can tune it within those limits

Cichlid fishes’ famous diversity in body coloration is accompanied by a highly diverse and complex visual system. Although cichlids possess an unusually high number of seven cone opsin genes, they express only a subset of these during their ontogeny, accounting for their astonishing interspecific variation in visual sensitivities. Much of this diversity is thought to have been shaped by natural selection as cichlids inhabit a variety of habitats with distinct light environments. Also, sexual selection might have contributed to the observed visual diversity, and sexual dimorphism in coloration potentially co‐evolved with sexual dimorphism in opsin expression. We investigated sex‐specific opsin expression of several cichlids from Africa and the Neotropics and collected and integrated datasets on sex‐specific body coloration, species‐specific visual sensitivities, lens transmission and habitat light properties for some of them. We comparatively analyzed this wide range of molecular and ecological data, illustrating how integrative approaches can address specific questions on the factors and mechanisms driving diversification, and the evolution of cichlid vision in particular. We found that both sexes expressed opsins at the same levels ‐ even in sexually dimorphic cichlid species – which argues against coevolution of sexual dichromatism and differences in sex‐specific visual sensitivity. Rather, a combination of environmental light properties and body coloration shaped the diversity in spectral sensitivities among cichlids. We conclude that although cichlids are particularly colorful and diverse and often sexually dimorphic, it would appear that natural rather than sexual selection is a more powerful force driving visual diversity in this hyper‐diverse lineage

Cadmium modification of nucleolar ultrastructure and RNA synthesis in Physarum polycephalum

Exposure of the acellular slime mold Physarum polycephalum to cadmium resulted in distortion of nucleolar structure and in inhibition of RNA synthesis. The extent of these lesions was dependent on concentration of cadmium, as well as duration and timing of exposure in the cell cycle. A 30-min exposure to 5 x 10-4 m CdSO4, initiated just as DNA synthesis began, inhibited RNA synthesis by 50% and caused subtle nucleolar changes: eccentric placement of nucleoli in nuclei, and the appearance of multiple nucleolar bodies in low incidence. Exposure to either 5 x 10-4 m or 1.5 x 10-3 m CdSO4 for 4 hr depressed RNA synthesis to 20-25% of control values and caused ring-shaped nucleoli. In electron micrographs of cadmium-treated cells, nucleoli appeared as electron dense rings of nucleolar material enclosing less intensely staining central zones, in contrast to control nucleoli which appeared as uniformly dense, nearly spherical bodies. Three-dimensional reconstructions showed that the "ring" was, in actuality, a sphere of nucleolar material completely surrounding a central cavity. A 4-hr exposure to 5 x 10-4 or 1.5 x 10-3 m CdSO4 after postmitotic reconstruction was complete and DNA synthesis had been underway for 2 hr or more inhibited RNA synthesis by 50%, but nucleolar rings were not formed. These observations identify the nucleus as a target for cadmium, or for effectors which mediate cadmium toxicity, and they suggest that disruption of nucleolar function (i.e., synthesis of RNA) and/or of nucleolar structure may be underlying mechanisms of cadmium toxicity.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/22652/1/0000203.pd

Long-term Impacts of Partial Afforestation on Water and Salt Dynamics of an Intermittent Catchment under Climate Change

Soil salinization is a major environmental issue in arid and semi-arid regions, and has been accelerated in some areas by removal of native vegetation cover. Partial afforestation can be a practical mitigation strategy if efficiently integrated with farms and pastures. Using an integrated surface-subsurface hydrological model, this study evaluates the water and salt dynamics and soil salinization conditions of a rural intermittent catchment in the semi-arid climate of southeast Australia subjected to four different partial afforestation configurations under different climate change scenarios, as predicted by several general circulation models. The results show that the locations of afforested areas can induce a retarding effect in the outflow of groundwater salt, with tree planting at lower elevations showing the steadier salt depletion rates. Moreover, except for the configuration with trees planted near the outlet of the catchment, the streamflow is maintained under all other configurations. It appears that under both Representative Concentration Pathways considered (RCP 4.5 and RCP 8.5), the Hadley Centre Global Environmental Model represents the fastest salt export scheme, whereas the Canadian Earth System Model and the Model for Interdisciplinary Research on Climate represent the slowest salt export scheme. Overall, it is found that the location of partial afforestation generally plays a more significant role than the climate change scenarios

A high-content imaging assay for the quantification of the Burkholderia pseudomallei induced multinucleated giant cell (MNGC) phenotype in murine macrophages

BACKGROUND: Burkholderia pseudomallei (Bp), a Gram-negative, motile, facultative intracellular bacterium is the causative agent of melioidosis in humans and animals. The Bp genome encodes a repertoire of virulence factors, including the cluster 3 type III secretion system (T3SS-3), the cluster 1 type VI secretion system (T6SS-1), and the intracellular motility protein BimA, that enable the pathogen to invade both phagocytic and non-phagocytic cells. A unique hallmark of Bp infection both in vitro and in vivo is its ability to induce cell-to-cell fusion of macrophages to form multinucleated giant cells (MNGCs), which to date are semi-quantitatively reported following visual inspection. RESULTS: In this study we report the development of an automated high-content image acquisition and analysis assay to quantitate the Bp induced MNGC phenotype. Validation of the assay was performed using T6SS-1 (∆hcp1) and T3SS-3 (∆bsaZ) mutants of Bp that have been previously reported to exhibit defects in their ability to induce MNGCs. Finally, screening of a focused small molecule library identified several Histone Deacetylase (HDAC) inhibitors that inhibited Bp-induced MNGC formation of macrophages. CONCLUSIONS: We have successfully developed an automated HCI assay to quantitate MNGCs induced by Bp in macrophages. This assay was then used to characterize the phenotype of the Bp mutants for their ability to induce MNGC formation and identify small molecules that interfere with this process. Successful application of chemical genetics and functional reverse genetics siRNA approaches in the MNGC assay will help gain a better understanding of the molecular targets and cellular mechanisms responsible for the MNGC phenotype induced by Bp, by other bacteria such as Mycobacterium tuberculosis, or by exogenously added cytokines

Beam test calibration of the balloon-borne imaging calorimeter for the CREAM experiment

CREAM (Cosmic Ray Energetics And Mass) is a multi-flight balloon mission designed to collect direct data on the elemental composition and individual energy spectra of cosmic rays. Two instrument suites have been built to be flown alternately on a yearly base. The tungsten/Sci-Fi imaging calorimeter for the second flight, scheduled for December 2005, was calibrated with electron and proton beams at CERN. A calibration procedure based on the study of the longitudinal shower profile is described and preliminary results of the beam test are presented.Comment: 4 pages, 4 figures. To be published in the Proceedings of 29th International Cosmic Ray Conference (ICRC 2005), Pune, India, August 3-10, 200

Effect of Amino Acids on the Corrosion and Metal Release from Copper and Stainless Steel

Copper (Cu) and stainless steel 316 L are widely used for biomedical applications, such as intrauterine devices and orthopedic/dental implants. Amino acids are abundantly present in biological environments. We investigated the influence of select amino acids on the corrosion of Cu under naturally aerated and deaerated conditions using a phosphate-free buffer. Amino acids increased the corrosion of Cu under both aeration conditions at pH 7.4. Cu release was also significantly (up to 18-fold) increased in the presence of amino acids, investigated at pH 7.4 and 37 °C for 24 h under naturally aerated conditions. Speciation modelling predicted a generally increased solubility of Cu in the presence of amino acids at pH 7.4. 316 L, investigated for metal release under similar conditions for comparison, released about 1,000-fold lower amounts of metals than did Cu and remained passive with no change in surface oxide composition or thickness. However, amino acids also increased the chromium release (up to 52-fold), significantly for lysine, and the iron release for cysteine, while nickel and molybdenum release remained unaffected. This was not predicted by solution speciation modelling. The surface analysis confirmed the adsorption of amino acids on 316 L and, to a lower extent, Cu coupons

Switching Mechanism in Single-Layer Molybdenum Disulfide Transistors: an Insight into Current Flow across Schottky Barriers

In this article, we study the properties of metal contacts to single-layer molybdenum disulfide (MoS2) crystals, revealing the nature of switching mechanism in MoS2 transistors. On investigating transistor behavior as contact length changes, we find that the contact resistivity for metal/MoS2 junctions is defined by contact area instead of contact width. The minimum gate dependent transfer length is ~0.63 {\mu}m in the on-state for metal (Ti) contacted single-layer MoS2. These results reveal that MoS2 transistors are Schottky barrier transistors, where the on/off states are switched by the tuning the Schottky barriers at contacts. The effective barrier heights for source and drain barriers are primarily controlled by gate and drain biases, respectively. We discuss the drain induced barrier narrowing effect for short channel devices, which may reduce the influence of large contact resistance for MoS2 Schottky barrier transistors at the channel length scaling limit.Comment: ACS Nano, ASAP (2013

Arterial spin labelling reveals an abnormal cerebral perfusion pattern in Parkinson's disease

There is a need for objective imaging markers of Parkinson's disease status and progression. Positron emission tomography and single photon emission computed tomography studies have suggested patterns of abnormal cerebral perfusion in Parkinson's disease as potential functional biomarkers. This study aimed to identify an arterial spin labelling magnetic resonance-derived perfusion network as an accessible, non-invasive alternative. We used pseudo-continuous arterial spin labelling to measure cerebral grey matter perfusion in 61 subjects with Parkinson's disease with a range of motor and cognitive impairment, including patients with dementia and 29 age- and sex-matched controls. Principal component analysis was used to derive a Parkinson's disease-related perfusion network via logistic regression. Region of interest analysis of absolute perfusion values revealed that the Parkinson's disease pattern was characterized by decreased perfusion in posterior parieto-occipital cortex, precuneus and cuneus, and middle frontal gyri compared with healthy controls. Perfusion was preserved in globus pallidus, putamen, anterior cingulate and post- and pre-central gyri. Both motor and cognitive statuses were significant factors related to network score. A network approach, supported by arterial spin labelling-derived absolute perfusion values may provide a readily accessible neuroimaging method to characterize and track progression of both motor and cognitive status in Parkinson's diseas

Exciton-photon interaction in a quantum dot embedded in a photonic microcavity

We present a detailed analysis of exciton-photon interaction in a microcavity made out of a photonic crystal slab. Here we have analyzed a disk-like quantum dot where an exciton is formed. Excitonic eigen-functions in addition to their eigen-energies are found through direct matrix diagonalization, while wave functions corresponding to unbound electron and hole are chosen as the basis set for this procedure. In order to evaluate these wave functions precisely, we have used Luttinger Hamiltonian in the case of hole while ignoring bands adjacent to conduction band for electron states. After analyzing Excitonic states, a photonic crystal based microcavity with a relatively high quality factor mode has been proposed and its lattice constant has been adjusted to obtain the prescribed resonant frequency. We use finite-difference time-domain method in order to simulate our cavity with sufficient precision. Finally, we formulate the coupling constants for exciton-photon interaction both where intra-band and inter-band transitions occur. By evaluating a sample coupling constant, it has been shown that the system can be in strong coupling regime and Rabi oscillations can occur for Excitonic state population.Comment: Journal of Physics B: Atomic and Molecular Physics (to appear

The influence of human genetic variation on Epstein-Barr virus sequence diversity.

Epstein-Barr virus (EBV) is one of the most common viruses latently infecting humans. Little is known about the impact of human genetic variation on the large inter-individual differences observed in response to EBV infection. To search for a potential imprint of host genomic variation on the EBV sequence, we jointly analyzed paired viral and human genomic data from 268 HIV-coinfected individuals with CD4 + T cell count < 200/mm <sup>3</sup> and elevated EBV viremia. We hypothesized that the reactivated virus circulating in these patients could carry sequence variants acquired during primary EBV infection, thereby providing a snapshot of early adaptation to the pressure exerted on EBV by the individual immune response. We searched for associations between host and pathogen genetic variants, taking into account human and EBV population structure. Our analyses revealed significant associations between human and EBV sequence variation. Three polymorphic regions in the human genome were found to be associated with EBV variation: one at the amino acid level (BRLF1:p.Lys316Glu); and two at the gene level (burden testing of rare variants in BALF5 and BBRF1). Our findings confirm that jointly analyzing host and pathogen genomes can identify sites of genomic interactions, which could help dissect pathogenic mechanisms and suggest new therapeutic avenues