Perspectives for a framework to understand aril initiation and development

A differentiated structure called “aril” has been described in seeds of several plant species during the course of evolution and might be considered as a supernumerary integument. Besides its ecological function in seed dispersal, the structure also represents a relevant character for systematic classification and exhibits important properties that impart agronomic value in certain species. Little is known about the molecular pathways underlying this morphological innovation because it is absent in currently used model species. A remarkable feature of the seeds of Passiflora species is the presence of a conspicuous aril. This genus is known for the ornamental, medicinal, and food values of its species. In view of the molecular resources and tools available for some Passiflora species, we highlight the potential of these species as models for developmental studies of the aril7CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO - CNPQCOORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIOR - CAPESFUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO - FAPESPnão temnão temnão te

\u3cem\u3eTithonia diversifolia\u3c/em\u3e for Ruminant Nutrition

India and Brazil lead the world ranking of livestock enteric methane emissions (FAO 2006). According to FAO (2006), Brazil (9.6 Tg of CH4/year) is the highest emitter of methane from cattle, followed by India (8.6 Tg of CH4/year) and the USA (5.1 Tg of CH4/year). In livestock, methane (CH4) formed from enteric fermentation of carbohydrates is primarily responsible for the emissions in the sector. Regarding livestock methane emission, Delgado et al. (2012) evaluated 20 tree and shrub species using in vitro technique and demonstrated a reducing effect on the amount of methane when Tithonia diversifolia was compared with, for example, Cynodon nlemfuensis grass. Tithonia diversifolia belongs to the division - Sphermatophyta; class - Eudicotiledoneae; sub-class - Metaclamídeas; Order - Campanulate; Family - Asteraceae; Genre - Tithonia, and Species - Tithonia diversifolia (Hemsl.), Gray (Souza 2008). Tithonia diversifolia can be very useful in animal nutrition (Fig. 1) by increasing the protein content of animal diet at low cost (Murgueitio et al. 2010) as well as in the recovery of degraded soils for it grows in areas with low levels of fertility and has high ability to absorb phosphorus, even if it is unavailable to other forage species (Kwabiah et al. 2003). The objective of this study was to assess the nutritional qualities, including quantification of enteric methane generated during in vitro ruminal fermentation, of Tithonia diversifolia as an alternative forage for ruminant nutrition in the tropics

Efeitos da matéria orgânica sobre a capacidade de retenção de umidade de quatro solos do município de Piracicaba

An experiment of incubation soil with organic matter (castor bean meal) was carried out in pots in order to test the effects of the organic matter on the moisture retention capacity of four soils of the Piracicaba municipality, State of São Paulo, Brasil. It was found that the organic matter increased the moisture retention capacity of the soils significantly at the levels of 5% (two soils) and 1% (two soils).Foi feito um ensaio de incubação, em vasos, para se verificar o efeito da matéria orgânica (torta de mamona) sobre o poder de retenção de umidade de 4 terras do município de Piracicaba. Conclui-se que tais efeitos foram lineares e significativos a 5% em duas terras e a 1% em outras duas

The Effects of \u3cem\u3eTithonia diversifolia\u3c/em\u3e on Dairy Cow Performance

Southeast, South and Central West are the main milk producing regions in the Brazil. Especially in the states of Minas Gerais, Goias and Sao Paulo, the tropical climate is very characteristic, with hot and rainy summers, and dry winters. Dry winters in these states are characterized by scarcity of pasture herbage mass, which directly influence the volume of milk produced. The high volume of milk produced in summer and low volume of milk produced in winter (i.e. seasonality of production which is about 20% of total milk volume) directly affects dairy farmers by reducing its revenue during dry winters due to a drop in milk yield. In addition, it increases the production costs by offering additional roughage supplements to the cattle (sugarcane fresh plus urea, corn silage or sorghum silage), or by feeding more concentrates and/or greater labour costs. Research evaluating the potential of the Tithonia diversifolia in improving milk yield and quality is extremely limited. This research project seeks to develop tools to understand the potential impact on milk composition and cow performance and to evaluate the significance of its outcomes and to aid in the ongoing development of innovative approaches. The aim of this study is to determine the effects of replacing up to 9.1% of sugarcane fresh and up to 6.3% of concentrates (DM basis) with Tithonia diversifolia fresh fed to lactating dairy cows. It is hypothesized that the initial replacement of a portion of the sugarcane fresh and concentrates (corn grain and soybean meal) with the Tithonia diversifolia fresh would not reduce dairy cow performance

Relationship among medical student resilience, educational environment and quality of life

Resilience is a capacity to face and overcome adversities, with personal transformation and growth. In medical education, it is critical to understand the determinants of a positive, developmental reaction in the face of stressful, emotionally demanding situations. We studied the association among resilience, quality of life (QoL) and educational environment perceptions in medical students. We evaluated data from a random sample of 1,350 medical students from 22 Brazilian medical schools. Information from participants included the Wagnild and Young's resilience scale (RS-14), the Dundee Ready Educational Environment Measure (DREEM), the World Health Organization Quality of Life questionnaire - short form (WHOQOL-BREF), the Beck Depression Inventory (BDI) and the State-Trait Anxiety Inventory (STAI). Full multiple linear regression models were adjusted for sex, age, year of medical course, presence of a BDI score >= 14 and STAI state or anxiety scores >= 50. Compared to those with very high resilience levels, individuals with very low resilience had worse QoL, measured by overall (beta=-0.89; 95% confidence interval =-1.21 to -0.56) and medical-school related (beta=-0.85; 95% CI=-1.25 to -0.45) QoL scores, environment (beta=-6.48; 95% CI=-10.01 to -2.95), psychological (beta=-22.89; 95% CI=-25.70 to -20.07), social relationships (beta=-14.28; 95% CI=-19.07 to -9.49), and physical health (beta=-10.74; 95% CI=-14.07 to -7.42) WHOQOL-BREF domain scores. They also had a worse educational environment perception, measured by global DREEM score (beta=-31.42; 95% CI=-37.86 to -24.98), learning (beta=-7.32; 95% CI=-9.23 to -5.41), teachers (beta=-5.37; 95% CI=-7.16 to -3.58), academic self-perception (beta=-7.33; 95% CI=-8.53 to -6.12), atmosphere (beta=-8.29; 95% CI=-10.13 to -6.44) and social self-perception (beta=-3.12; 95% CI=-4.11 to -2.12) DREEM domain scores. We also observed a dose-response pattern across resilience level groups for most measurements. Medical students with higher resilience levels had a better quality of life and a better perception of educational environment. Developing resilience may become an important strategy to minimize emotional distress and enhance medical training106CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO - CNPQCOORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIOR - CAPE

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumorinfiltrating lymphocytes (TILs) based on H&E images from 13 TCGA tumor types. These TIL maps are derived through computational staining using a convolutional neural network trained to classify patches of images. Affinity propagation revealed local spatial structure in TIL patterns and correlation with overall survival. TIL map structural patterns were grouped using standard histopathological parameters. These patterns are enriched in particular T cell subpopulations derived from molecular measures. TIL densities and spatial structure were differentially enriched among tumor types, immune subtypes, and tumor molecular subtypes, implying that spatial infiltrate state could reflect particular tumor cell aberration states. Obtaining spatial lymphocytic patterns linked to the rich genomic characterization of TCGA samples demonstrates one use for the TCGA image archives with insights into the tumor-immune microenvironment

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN