Widespread distribution and a new recombinant species of Brazilian virus associated with cotton blue disease

<p>Abstract</p> <p>Background</p> <p>Cotton blue disease (CBD), an important global cotton crop pathology responsible for major economic losses, is prevalent in the major cotton-producing states of Brazil. Typical CBD symptoms include stunting due to internodal shortening, leaf rolling, intense green foliage, and yellowing veins. Atypical CBD symptoms, including reddish and withered leaves, were also observed in Brazilian cotton fields in 2007. Recently, a <it>Polerovirus </it>named Cotton leafroll dwarf virus (CLRDV) was shown to be associated with CBD.</p> <p>Results</p> <p>To understand the distribution and genetic diversity of CLRDV in Brazil, we analyzed 23 CBD-symptomatic plants from susceptible cotton varieties originating from five of the six most important cotton-growing states, from 2004–2007. Here, we report on CLRDV diversity in plants with typical or atypical CBD symptoms by comparing viral coat protein, RNA polymerase (RdRp), and intergenic region genomic sequences.</p> <p>Conclusion</p> <p>The virus had a widespread distribution with a low genetic diversity; however, three divergent isolates were associated with atypical CBD symptoms. These divergent isolates had a CLRDV-related coat protein but a distinct RdRp sequence, and probably arose from recombination events. Based on the taxonomic rules for the family <it>Luteoviridae</it>, we propose that these three isolates represent isolates of a new species in the genus <it>Polerovirus</it>.</p

Materialization of a Geometrically Frustrated Magnet in a Hybrid Coordination Framework: A Study of the Iron(II) Oxalate Fluoride Framework, KFe(C2O4)F

Here we discuss magnetic hybrid coordination frameworks in relation to the realization of new geometrically frustrated magnets. In particular, we present the nuclear and magnetic structures of one such system—the Fe2+-based oxalate fluoride framework KFe(C2O4)F—through analysis of the powder neutron diffraction and muon spectroscopy data. KFe(C2O4)F retains an orthorhombic Cmc21 structure upon cooling to 2 K composed of quasi-one-dimensional iron fluoride chains connected to a distorted triangular network via oxalate anions. Previous magnetometry measurements of KFe(C2O4)F indicate that it is a strongly interacting system with a Weiss constant θ ≈ −300 K that undergoes a magnetic ordering transition at TN ≈ 20 K, yielding a frustration index, f = |θ|/TN ≈ 15, reflective of high-spin frustration. We determine the nature of this frustrated antiferromagnetic ordering below TN and show that the resulting magnetic structure is best described by a model in the Cmc′21′ magnetic space group

Epistasis not needed to explain low dN/dS

An important question in molecular evolution is whether an amino acid that occurs at a given position makes an independent contribution to fitness, or whether its effect depends on the state of other loci in the organism's genome, a phenomenon known as epistasis. In a recent letter to Nature, Breen et al. (2012) argued that epistasis must be "pervasive throughout protein evolution" because the observed ratio between the per-site rates of non-synonymous and synonymous substitutions (dN/dS) is much lower than would be expected in the absence of epistasis. However, when calculating the expected dN/dS ratio in the absence of epistasis, Breen et al. assumed that all amino acids observed in a protein alignment at any particular position have equal fitness. Here, we relax this unrealistic assumption and show that any dN/dS value can in principle be achieved at a site, without epistasis. Furthermore, for all nuclear and chloroplast genes in the Breen et al. dataset, we show that the observed dN/dS values and the observed patterns of amino acid diversity at each site are jointly consistent with a non-epistatic model of protein evolution.Comment: This manuscript is in response to "Epistasis as the primary factor in molecular evolution" by Breen et al. Nature 490, 535-538 (2012

Physical Exercise Decreases Fasting Hyperglycemia in Diabetic Mice Through AMPK Activation

Introduction: The deficiency in glucose uptake in peripheral tissues and increased hepatic gluconeogenesis are physiopathological phenomena observed in type 2 diabetes patients. Physical exercise plays an important role in the improvement of glycemic profile in diabetic patients; however, the mechanisms involved in these processes have not been fully elucidated. Objective: to assess the role of AMPK protein in the glycemic control of diabetic mice after exercise. Methods: During fasting condition, the insulin tolerance test (ITT) and Western blot technique, were combined to assess the glucose homeostasis in diabetic mice (ob/ob and db/db) after a single swimming session. Results: Fasting hyperglycemia, severe insulin resistance and deficiency in the AMPk/ACC signaling in muscle and liver observed in the diabetic mice were reversed after the exercise session. The restoration of AMPK/ACC signaling reduced the expression of the gluconeogenic enzyme, PEPCk in the liver, and increased the translocation of GLUT4 in the skeletal muscle. These data indicate that the activation of AMPK/ACC pathway induced by physical exercise is important to reduce fasting glucose levels in experimental models of type 2 diabetes. These data open new insights for determination of physical activity control on the glucose homeostasis in diabetic patients.15317918