4,602 research outputs found
Cross-Species Analysis of Single-Cell Transcriptomic Data
The ability to profile hundreds of thousands to millions of single cells using scRNA-sequencing has revolutionized the fields of cell and developmental biology, providing incredible insights into the diversity of forms and functions of cell types across many species. These technologies hold the promise of developing detailed cell type phylogenies which can describe the evolutionary and developmental relationships between cell types across species. This will require sampling of many species and taxa using single-cell transcriptomics, and methods to classify cell type homologies and diversifications. Many tools currently exist for analyzing single cell data and identifying cell types. However, cross-species comparisons are complicated by many biological and technical factors. These factors include batch effects common to deep-sequencing approaches, well known evolutionary relationships between orthologous and paralogous genes, and less well-understood evolutionary forces shaping transcriptome variation between species. In this review, I discuss recent developments in computational methods for the comparison of single-cell-omic data across species. These approaches have the potential to provide invaluable insight into how evolutionary forces act at the level of the cell and will further our understanding of the evolutionary origins of animal and cellular diversity
Subsonic stability and control derivatives for an unpowered, remotely piloted 3/8-scale F-15 airplane model obtained from flight test
In response to the interest in airplane configuration characteristics at high angles of attack, an unpowered remotely piloted 3/8-scale F-15 airplane model was flight tested. The subsonic stability and control characteristics of this airplane model over an angle of attack range of -20 to 53 deg are documented. The remotely piloted technique for obtaining flight test data was found to provide adequate stability and control derivatives. The remotely piloted technique provided an opportunity to test the aircraft mathematical model in an angle of attack regime not previously examined in flight test. The variation of most of the derivative estimates with angle of attack was found to be consistent, particularly when the data were supplemented by uncertainty levels
A large scale height galactic component of the diffuse 2-60 keV background
The diffuse 2-60 keV X-ray background has a galactic component clearly detectable by its strong variation with both galactic latitude and longitude. This galactic component is typically 10 percent of the extragalactic background toward the galactic center, half that strong toward the anticenter, and extrapolated to a few percent of the extragalactic background toward the galactic poles. It is acceptably modeled by a finite radius emission disk with a scale height of several kiloparsecs. The averaged galactic spectrum is best fitted by a thermal spectrum of kT about 9 keV, a spectrum much softer than the about 40 keV spectrum of the extragalactic component. The most likely source of this emission is low luminosity stars with large scale heights such as subdwarfs. Inverse Compton emission from GeV electrons on the microwave background contributes only a fraction of the galactic component unless the local cosmic ray electron spectrum and intensity are atypical
A complete X-ray sample of the high latitude sky from HEAO-1 A-2: log N lo S and luminosity functions
An experiment was performed in which a complete X-ray survey of the 8.2 steradians of the sky at galactic latitudes where the absolute value of b is 20 deg down to a limiting sensitivity of 3.1 x ten to the minus 11th power ergs/sq cm sec in the 2-10 keV band. Of the 85 detected sources 17 were identified with galactic objects, 61 were identified with extragalactic objects, and 7 remain unidentified. The log N - log S relation for the non-galactic objects is well fit by the Euclidean relationship. The X-ray spectra of these objects were used to construct log N - log S in physical units. The complete sample of identified sources was used to construct X-ray luminosity functions, using the absolute maximum likelihood method, for clusters galaxies and active galactic nuclei
Nonlinearities and Effects of Transverse Beam Size in Beam Position Monitors (revised)
The fields produced by a long beam with a given transverse charge
distribution in a homogeneous vacuum chamber are studied. Signals induced by a
displaced finite-size beam on electrodes of a beam position monitor (BPM) are
calculated and compared to those produced by a pencil beam. The non-linearities
and corrections to BPM signals due to a finite transverse beam size are
calculated for an arbitrary chamber cross section. Simple analytical
expressions are given for a few particular transverse distributions of the beam
current in a circular or rectangular chamber. Of particular interest is a
general proof that in an arbitrary homogeneous chamber the beam-size
corrections vanish for any axisymmetric beam current distribution.Comment: REVTeX, 8 pages, 9 figures. Corrected Eqs. (7),(22),(25) and Figs.
2-9. Expande
Neither dust nor black carbon causing apparent albedo decline in Greenland\u27s dry snow zone: Implications for MODIS C5 surface reflectance
Remote sensing observations suggest Greenland ice sheet (GrIS) albedo has declined since 2001, even in the dry snow zone. We seek to explain the apparent dry snow albedo decline. We analyze samples representing 2012–2014 snowfall across NW Greenland for black carbon and dust light-absorbing impurities (LAI) and model their impacts on snow albedo. Albedo reductions due to LAI are small, averaging 0.003, with episodic enhancements resulting in reductions of 0.01–0.02. No significant increase in black carbon or dust concentrations relative to recent decades is found. Enhanced deposition of LAI is not, therefore, causing significant dry snow albedo reduction or driving melt events. Analysis of Collection 5 Moderate Resolution Imaging Spectroradiometer (MODIS) surface reflectance data indicates that the decline and spectral shift in dry snow albedo contains important contributions from uncorrected Terra sensor degradation. Though discrepancies are mostly below the stated accuracy of MODIS products, they will require revisiting some prior conclusions with C6 data
Filamentation Involves Two Overlapping, but Distinct, Programs of Filamentation in the Pathogenic Fungus Candida albicans
The ability of the human pathogenic fungus Candida albicans to switch between yeast-like and filamentous forms of growth has long been linked to pathogenesis. Numerous environmental conditions, including growth at high temperatures, nutrient limitation, and exposure to serum, can trigger this morphological switch and are frequently used in in vitro models to identify genes with roles in filamentation. Previous work has suggested that differences exist between the various in vitro models both in the genetic requirements for filamentation and transcriptional responses to distinct filamentation-inducing media, but these differences had not been analyzed in detail. We compared 10 in vitro models for filamentation and found broad genetic and transcriptomic differences between model systems. The comparative analysis enabled the discovery of novel media-independent genetic requirements for filamentation as well as a core filamentation transcriptional profile. Our data also suggest that the physical environment drives distinct programs of filamentation in C. albicans, which has significant implications for filamentation in vivo
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