758 research outputs found
Effects of Boundary Conditions on Single-File Pedestrian Flow
In this paper we investigate effects of boundary conditions on one
dimensional pedestrian flow which involves purely longitudinal interactions.
Qualitatively, stop-and-go waves are observed under closed boundary condition
and dissolve when the boundary is open. To get more detailed information the
fundamental diagrams of the open and closed systems are compared using
Voronoi-based measurement method. Higher maximal specific flow is observed from
the pedestrian movement at open boundary condition
New insights into pedestrian flow through bottlenecks
Capacity estimation is an important tool for the design and dimensioning of
pedestrian facilities. The literature contains different procedures and
specifications which show considerable differences with respect to the
estimated flow values. Moreover do new experimental data indicate a stepwise
growing of the capacity with the width and thus challenge the validity of the
specific flow concept. To resolve these differences we have studied
experimentally the unidirectional pedestrian flow through bottlenecks under
laboratory conditions. The time development of quantities like individual
velocities, density and individual time gaps in bottlenecks of different width
is presented. The data show a linear growth of the flow with the width. The
comparison of the results with experimental data of other authors indicates
that the basic assumption of the capacity estimation for bottlenecks has to be
revised. In contradiction with most planning guidelines our main result is,
that a jam occurs even if the incoming flow does not overstep the capacity
defined by the maximum of the flow according to the fundamental diagram.Comment: Traffic flow, pedestrian traffic, crowd dynamics, capacity of
bottlenecks (16 pages, 8 figures); (+ 3 new figures and minor revisions
When is a bottleneck a bottleneck?
Bottlenecks, i.e. local reductions of capacity, are one of the most relevant
scenarios of traffic systems. The asymmetric simple exclusion process (ASEP)
with a defect is a minimal model for such a bottleneck scenario. One crucial
question is "What is the critical strength of the defect that is required to
create global effects, i.e. traffic jams localized at the defect position".
Intuitively one would expect that already an arbitrarily small bottleneck
strength leads to global effects in the system, e.g. a reduction of the maximal
current. Therefore it came as a surprise when, based on computer simulations,
it was claimed that the reaction of the system depends in non-continuous way on
the defect strength and weak defects do not have a global influence on the
system. Here we reconcile intuition and simulations by showing that indeed the
critical defect strength is zero. We discuss the implications for the analysis
of empirical and numerical data.Comment: 8 pages, to appear in the proceedings of Traffic and Granular Flow
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Caloric restriction in C57BL/6J mice mimics therapeutic fasting in humans
BACKGROUND: Caloric restriction (CR) has long been recognized as a dietary therapy that improves health and increases longevity. Little is known about the persistent effects of CR on plasma biomarkers (glucose, ketone bodies, and lipids) following re-feeding in mice. It is also unclear how these biomarker changes in calorically restricted mice relate to those observed previously in calorically restricted humans. RESULTS: Three groups of individually housed adult female C57BL/6J (B6) mice (n = 4/group) were fed a standard rodent chow diet either: (1) unrestricted (UR); (2) restricted for three weeks to reduce body weight by approximately 15–20% (R); or (3) restricted for three weeks and then re-fed unrestricted (ad libitum) for an additional three weeks (R-RF). Body weight and food intake were measured throughout the study, while plasma lipids and levels of glucose and ketone bodies (β-hydroxybutyrate) were measured at the termination of the study. Plasma glucose, phosphatidylcholine, cholesterol, and triglycerides were significantly lower in the R mice than in the UR mice. In contrast, plasma fatty acids and β-hydroxybutyrate were significantly higher in the R mice than in the UR mice. CR had no effect on plasma phosphatidylinositol levels. While body weight and plasma lipids of the R-RF mice returned to unrestricted levels upon re-feeding, food intake and glucose levels remained significantly lower than those prior to the initiation of CR. CONCLUSION: CR establishes a new homeostatic state in B6 mice that persists for at least three weeks following ad libitum re-feeding. Moreover, the plasma biomarker changes observed in B6 mice during CR mimic those reported in humans on very low calorie diets or during therapeutic fasting
Metalloporphyrins inactivate caspase-3 and -8
Activation of caspases represents one of the earliest biochemical indicators for apoptotic cell death. Therefore, measurement of caspase activity is a widely used and generally accepted method to determine apoptosis in a wide range of in vivo and in vitro settings. Numerous publications characterize the role of the heme-catabolizing enzyme heme oxygenase-1 (HO-1) in regulating apoptotic processes. Different metalloporphyrins representing inducers and inhibitors of this enzyme are often used, followed by assessment of apoptotic cell death. In the present work, we found that caspase-3-like activity, as well as activity of caspase-8 measured in either Fas (CD95) ligand-treated Jurkat T-lymphocytes or by the use of recombinant caspase-3 or -8, was inhibited by different metalloporphyrins (cobalt(III) protoporphyrin IX, tin and zinc II) protoporphyrin-IX). Moreover, employing the mouse model of Fas-induced liver apoptosis these properties of porphyrins could also be demonstrated in vivo. The metalloporphyrins were shown to inhibit caspase-3-mediated PARP cleavage. Molecular modeling studies demonstrated that porphyrins can occupy the active site of caspase-3 in an energetically favorable manner and in a binding mode similar to that of known inhibitors. The data shown here introduce metalloporphyrins as direct inhibitors of caspase activity. This finding points to the need for careful employment of metalloporphyrins as modulators of HO-1
Geophysical Imaging of Watershed Subsurface Patterns and Prediction of Soil Texture and Water Holding Capacity
The spatial distribution of subsurface soil textural properties across the landscape is an important control on the hydrological and ecological function of a watershed. Traditional methods of mapping soils involving subjective assignment of soil boundaries are inadequate for studies requiring a quantitative assessment of the landscape and its subsurface connectivity and storage capacity. Geophysical methods such as electromagnetic induction (EMI) provide the possibility of obtaining high-resolution images across a landscape to identify subtle changes in subsurface soil patterns. In this work we show how EMI can be used to image the subsurface of a ∼38 ha watershed. We present an imaging approach using kriging to interpolate and sequential Gaussian simulation to estimate the uncertainty in the maps. We also explore the idea of difference ECa mapping to try to exploit changes in soil moisture to identify more hydrologically active locations. In addition, we use a digital elevation model to identify flow paths and compare these with the ECa measurement as a function of distance. Finally, we perform a more traditional calibration of ECa with clay percentage across the watershed and determine soil water holding capacity (SWHC). The values of SWHC range from 0.07 to 0.22 m3 m−3 across the watershed, which contrast with the uniform value of 0.13 derived from the traditional soil survey maps. Additional work is needed to appropriately interpret and incorporate EMI data into hydrological studies; however, we argue that there is considerable merit in identifying subsurface soil patterns from these geophysical images
Batch correction and harmonization of –Omics datasets with a tunable median polish of ratio
Large scale −omics datasets can provide new insights into normal and disease-related biology when analyzed through a systems biology framework. However, technical artefacts present in most −omics datasets due to variations in sample preparation, batching, platform settings, personnel, and other experimental procedures prevent useful analyses of such data without prior adjustment for these technical factors. Here, we demonstrate a tunable median polish of ratio (TAMPOR) approach for batch effect correction and agglomeration of multiple, multi-batch, site-specific cohorts into a single analyte abundance data matrix that is suitable for systems biology analyses. We illustrate the utility and versatility of TAMPOR through four distinct use cases where the method has been applied to different proteomic datasets, some of which contain a specific defect that must be addressed prior to analysis. We compare quality control metrics and sources of variance before and after application of TAMPOR to show that TAMPOR is effective at removing batch effects and other unwanted sources of variance in −omics data. We also show how TAMPOR can be used to harmonize −omics datasets even when the data are acquired using different analytical approaches. TAMPOR is a powerful and flexible approach for cleaning and harmonization of −omics data prior to downstream systems biology analysis
Pre- and postbariatric subtypes and their predictive value for health-related outcomes measured three years after surgery
Background: Although bariatric surgery is the most effective treatment for severe obesity, a subgroup of patients shows insufficient postbariatric outcomes. Differences may at least in part result from heterogeneous patient profiles regarding reactive and regulative temperament, emotion dysregulation, and disinhibited eating. This study aims to subtype patients based on these aspects before and two years after bariatric surgery and tests the predictive value of identified subtypes for health-related outcomes three years after surgery
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