Experimental validation of boundary element methods for noise prediction

Experimental validation of methods to predict radiated noise is presented. A combined finite element and boundary element model was used to predict the vibration and noise of a rectangular box excited by a mechanical shaker. The predicted noise was compared to sound power measured by the acoustic intensity method. Inaccuracies in the finite element model shifted the resonance frequencies by about 5 percent. The predicted and measured sound power levels agree within about 2.5 dB. In a second experiment, measured vibration data was used with a boundary element model to predict noise radiation from the top of an operating gearbox. The predicted and measured sound power for the gearbox agree within about 3 dB

Impedance measurement using a two-microphone, random-excitation method

The feasibility of using a two-microphone, random-excitation technique for the measurement of acoustic impedance was studied. Equations were developed, including the effect of mean flow, which show that acoustic impedance is related to the pressure ratio and phase difference between two points in a duct carrying plane waves only. The impedances of a honeycomb ceramic specimen and a Helmholtz resonator were measured and compared with impedances obtained using the conventional standing-wave method. Agreement between the two methods was generally good. A sensitivity analysis was performed to pinpoint possible error sources and recommendations were made for future study. The two-microphone approach evaluated in this study appears to have some advantages over other impedance measuring techniques

Validation of finite element and boundary element methods for predicting structural vibration and radiated noise

Analytical and experimental validation of methods to predict structural vibration and radiated noise are presented. A rectangular box excited by a mechanical shaker was used as a vibrating structure. Combined finite element method (FEM) and boundary element method (BEM) models of the apparatus were used to predict the noise radiated from the box. The FEM was used to predict the vibration, and the surface vibration was used as input to the BEM to predict the sound intensity and sound power. Vibration predicted by the FEM model was validated by experimental modal analysis. Noise predicted by the BEM was validated by sound intensity measurements. Three types of results are presented for the total radiated sound power: (1) sound power predicted by the BEM modeling using vibration data measured on the surface of the box; (2) sound power predicted by the FEM/BEM model; and (3) sound power measured by a sound intensity scan. The sound power predicted from the BEM model using measured vibration data yields an excellent prediction of radiated noise. The sound power predicted by the combined FEM/BEM model also gives a good prediction of radiated noise except for a shift of the natural frequencies that are due to limitations in the FEM model

Comparison of analysis and experiment for gearbox noise

Low contact ratio spur gears were tested in the NASA gear-noise rig to study the noise radiated from the top of the gearbox. Experimental results were compared with a NASA acoustics code to validate the code for predicting transmission noise. The analytical code is based on the boundary element method (BEM) which models the gearbox top as a plate in an infinite baffle. Narrow band vibration spectra measured at 63 nodes on the gearbox top were used to produce input data for the BEM model. The BEM code predicted the total sound power based on the measured vibration. The measured sound power was obtained from an acoustic intensity scan taken near the surface of the gearbox at the same 63 nodes used for vibration measurement. Analytical and experimental results were compared at four different speeds for sound power at each of the narrow band frequencies over the range of 400 to 3200 Hz. Results are also compared for the sound power level at meshing frequency plus three sideband pairs and at selected gearbox resonant frequencies. The difference between predicted and measure sound power is typically less than 3 dB with the predicted value generally less than the measured value

Acoustical analysis of gear housing vibration

The modal and acoustical analysis of the NASA gear-noise rig is described. Experimental modal analysis techniques were used to determine the modes of vibration of the transmission housing. The resulting modal data were then used in a boundary element method (BEM) analysis to calculate the sound pressure and sound intensity on the surface of the housing as well as the radiation efficiency of each mode. The radiation efficiencies of the transmission housing modes are compared with theoretical results for finite, baffled plates. A method that uses the measured mode shapes and the BEM to predict the effect of simple structural changes on the sound radiation efficiency of the modes of vibration is also described

Surface Vibration Reconstruction Using Inverse Numerical Acoustics

This paper explores the use of inverse numerical acoustics to reconstruct the surface vibration of a noise source. Inverse numerical acoustics is mainly used for source identification. This approach uses the measured sound pressure at a set of field points and the Helmholtz integral equation to reconstruct the normal surface velocity. The number of sound pressure measurements is considerably less than the number of surface vibration nodes. An overview of inverse numerical acoustics is presented and compared with other holography techniques such as nearfield acoustical holography and the Helmholtz equation least squares method. In order to obtain an acceptable reproduction of the surface vibration, several critical factors such as the field point selection and the effect of experimental errors have to be handled properly. Other practical considerations such as the use of few measured velocities and regularization techniques will also be presented. Examples will include a diesel engine, a transmission housing and an engine cover

Evolutionary tradeoffs in cellular composition across diverse bacteria

One of the most important classic and contemporary interests in biology is the connection between cellular composition and physiological function. Decades of research have allowed us to understand the detailed relationship between various cellular components and processes for individual species, and have uncovered common functionality across diverse species. However, there still remains the need for frameworks that can mechanistically predict the tradeoffs between cellular functions and elucidate and interpret average trends across species. Here we provide a comprehensive analysis of how cellular composition changes across the diversity of bacteria as connected with physiological function and metabolism, spanning five orders of magnitude in body size. We present an analysis of the trends with cell volume that covers shifts in genomic, protein, cellular envelope, RNA and ribosomal content. We show that trends in protein content are more complex than a simple proportionality with the overall genome size, and that the number of ribosomes is simply explained by cross-species shifts in biosynthesis requirements. Furthermore, we show that the largest and smallest bacteria are limited by physical space requirements. At the lower end of size, cell volume is dominated by DNA and protein content—the requirement for which predicts a lower limit on cell size that is in good agreement with the smallest observed bacteria. At the upper end of bacterial size, we have identified a point at which the number of ribosomes required for biosynthesis exceeds available cell volume. Between these limits we are able to discuss systematic and dramatic shifts in cellular composition. Much of our analysis is connected with the basic energetics of cells where we show that the scaling of metabolic rate is surprisingly superlinear with all cellular components

Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements

<p>Abstract</p> <p>Background</p> <p>Inteins and introns are genetic elements that are removed from proteins and RNA after translation or transcription, respectively. Previous studies have suggested that these genetic elements are found in conserved parts of the host protein. To our knowledge this type of analysis has not been done for group II introns residing within a gene. Here we provide quantitative statistical support from an analyses of proteins that host inteins, group I introns, group II introns and spliceosomal introns across all three domains of life.</p> <p>Results</p> <p>To determine whether or not inteins, group I, group II, and spliceosomal introns are found preferentially in conserved regions of their respective host protein, conservation profiles were generated and intein and intron positions were mapped to the profiles. Fisher's combined probability test was used to determine the significance of the distribution of insertion sites across the conservation profile for each protein. For a subset of studied proteins, the conservation profile and insertion positions were mapped to protein structures to determine if the insertion sites correlate to regions of functional activity. All inteins and most group I introns were found to be preferentially located within conserved regions; in contrast, a bacterial intein-like protein, group II and spliceosomal introns did not show a preference for conserved sites.</p> <p>Conclusions</p> <p>These findings demonstrate that inteins and group I introns are found preferentially in conserved regions of their respective host proteins. Homing endonucleases are often located within inteins and group I introns and these may facilitate mobility to conserved regions. Insertion at these conserved positions decreases the chance of elimination, and slows deletion of the elements, since removal of the elements has to be precise as not to disrupt the function of the protein. Furthermore, functional constrains on the targeted site make it more difficult for hosts to evolve immunity to the homing endonuclease. Therefore, these elements will better survive and propagate as molecular parasites in conserved sites. In contrast, spliceosomal introns and group II introns do not show significant preference for conserved sites and appear to have adopted a different strategy to evade loss.</p

Clamp loader ATPases and the evolution of DNA replication machinery

Clamp loaders are pentameric ATPases of the AAA+ family that operate to ensure processive DNA replication. They do so by loading onto DNA the ring-shaped sliding clamps that tether the polymerase to the DNA. Structural and biochemical analysis of clamp loaders has shown how, despite differences in composition across different branches of life, all clamp loaders undergo the same concerted conformational transformations, which generate a binding surface for the open clamp and an internal spiral chamber into which the DNA at the replication fork can slide, triggering ATP hydrolysis, release of the clamp loader, and closure of the clamp round the DNA. We review here the current understanding of the clamp loader mechanism and discuss the implications of the differences between clamp loaders from the different branches of life