Composition and physicochemical properties of oat starches

Starches from two new oat varieties namely AC Stewart (Avena sativa L.) and NO 753-2 (Avena nuda L.) were isolated and some of their characteristics determined. The total amount of starch lipids (TSL) extracted by acid hydrolysis was 1.60% (w/w) in both starches. The free lipid content (extracted by chloroform-methanol (CM) 2:1 v/v at 25°C) was 0.36 and 0.30% (w/w) in NO 753-2 and AC Stewart starches, respectively. The bound lipid content (extracted by hot n-propanol-water 3:1 v/v from the residue left after CM extraction) was 1.27 and 1.37% (w/w) in NO 753-2 and AC Stewart starches, respectively. The total amylose contents were nearly the same (~23%, w/w) in both starches, of which 14.1 (NO 753-2) and 15.3% (AC Stewart) were complexed by native lipids. The starches differed widely in their degree of swelling, gelatinization transition temperatures and enthalpy, susceptibility towards acid and enzyme hydrolysis, gel strength, paste viscosity, thermal stability and retrogradation characteristics. The results suggest that the extent of interaction of starch chains within the amorphous and crystalline regions of the granule was stronger in NO 753-2 than in AC Stewart

Enzyme-assisted synthesis of structured lipids containing long-chain omega-3 and omega-6 polyunsaturated fatty acids

Lipase-catalyzed acidolysis of borage (Borago officinalis L.) and evening primrose (Oenothera biennis L.) oils with long-chain ω3-polyunsaturated fatty acids (LCω3-PUFA), namely docosahexaenoic acid (DHA) and/or eicosapentaenoic acid (EPA), in organic solvents was studied. Six microbial lipases from Candida antarctica, Mucor miehei, Pseudomonas sp., Aspergillus niger, Candida rugosa and Thermomyces lanuginosus were initially used as biocatalysts for the acidolysis reaction. Among the enzymes tested, an immobilized lipase, Novozym-435 from Candida antarctica showed the highest degree of DHA incorporation (25.8-28.7%, after 24 h) in borage oil (BO) and evening primrose oil (EPO). However, the maximum incorporation of EPA (28.7-30.7%, after 24 h) in both oils was achieved with lipase PS-30 from Pseudomonas sp. In another study, incorporation of EPA+DHA into BO and EPO was carried out by first screening of lipases listed above; lipase PS-30 from Pseudomonas sp. was the most efficient enzyme examined (31.7-32.7% EPA+DHA incorporation, after 24 h). -- Effects of variation of reaction parameters, namely enzyme load, temperature, time course, mole ratio of substrates and type of organic solvents were monitored for the most effective enzymes, those from Candida antarctica and Pseudomonas sp., as the biocatalysts of choice. Incorporation of DHA and/or EPA increased significantly (p ≤ 0.05) with increasing the amount of enzyme. As the incubation time progressed, incorporation of these fatty acids was also increased, similar to that observed when the temperature and mole ratio of substrates increased. The highest DHA (37.4-39.7%) or EPA (37.4-39.9%) incorporation occurred at a mole ratio of 1:3 (oil/ DHA or EPA). However, maximum incorporation of EPA+DHA (54-57.5%) occurred at a mole ratio of 1:2:2 (oil/EPA/DHA) and then remained constant between mole ratios of 1:2:2 and 1:3:3. Among solvents examined, n-hexane served best in giving rise to 25.5-27.4% DHA, 25.2-26.8% EPA and 27.8-33.3% EPA+DHA incorporation in the oils. However, solvent-free reactions also gave satisfactory incorporation of 18.1-20.5% DHA, 18.6-20.4% EPA and 23.4-28.8% EPA+DHA in the oils tested. -- Response surface methodology (RSM) was used to obtain a maximum yield of DHA, EPA and EPA+DHA incorporation while using the minimum amount of enzyme possible. Process parameters studied were the amount of enzyme (100-350 units), reaction temperature (20-60°C) and reaction time (6-30 h). All experiments were carried out according to a face-centred cube design. Under optimum conditions (162-165 units of Candida antarctica enzyme: 43-50°C; 25-27 h), incorporation of DHA was 35.6% in BO and 33.5% in EPO. Optimization of acidolysis of oils with EPA, gave rise to a maximum of 35.4 and 33.9% EPA incorporation in BO and EPO, respectively, at 299-309 units of Pseudomonas sp. enzyme, reaction temperature of 40-44°C and reaction time of 25-27 h. Similarly, maximum incorporation of EPA+DHA in BO (35.5%) and EPO (33.6%) was attained at 278-299 units of Pseudomonas sp enzyme, at 42-43°C after 24-26 h. -- In another study, enzymatically modified oils, produced under optimum reaction conditions, were classified using thin-layer chromatography-flame ionization detection (TLC-FID). The results showed that the content of TAG (85.1-95.1%) was much higher than that of the DAG (2.4-11.2%) and MAG (0.3-9.7%) in the structured lipids so produced. Because free fatty acids were removed by NaOH after the acidolysis reaction, they were not detected by TLC-FID. The products were also separated by TLC and the fatty acid compositions of their corresponding isolated bands analyzed by gas chromatography. Results showed that DHA and/or EPA were mainly located in TAG fractions of enzymatically modified oils (33.2-35.4% DHA; 32.5-33.2% EPA and 33.6-35.5% EPA+DHA in DHA, EPA and EPA+DHA-enriched oils, respectively). The TAG fractions also contained appreciable proportions of γ-linolenic acid (GLA) (11.0-17.1 and 7.5-7.6% in DHA, EPA and EPA+DHA-enriched BO and EPO, respectively). -- Stereospecific analysis was carried out to establish positional distribution of fatty acids in the TAG of DHA, EPA and EPA+DHA-enriched oils. In DHA-enriched BO, DHA was randomly distributed over the three positions of TAG while GLA was mainly esterified at the sn-2 and sn-3 positions. In DHA-enriched EPO, however, DHA and GLA were concentrated in the sn-2 position. In EPA-enriched BO, EPA was randomly distributed over the three positions of TAG, similar to that observed for DHA. In EPA-enriched EPO, however, this fatty acid was mainly located at the primary positions (sn-1 and sn-3) of TAG. In both oils, GLA was preferentially esterified at the sn-2 position. In EPA+DHA-enriched BO, EPA and DHA were mainly esterified at the sn-1 and sn-3 positions of TAG while GLA was mainly located at the sn-2 position. In EPA+DHA-enriched EPO, GLA was mainly located at the sn-2 and sn-3 positions; EPA was preferentially esterified at the sn-1 and sn-3 positions, while DHA was found mainly at the sn-3 position. -- The oxidative stability of enzymatically modified oils as well as their unmodified counterparts was evaluated under Schaal oven conditions at 60°C over a 96 h storage period. Conjugated dienes (CD), 2-thiobarbituric acid reactive substances (TBARS) and headspace volatiles were determined. In addition, proton nuclear magnetic resonance (¹H NMR) spectroscopy was used to monitor relative changes in the proton absorption pattern of the fatty acids of oils during storage. Among the oils examined, enzymatically modified products gave rise to higher CD and TBARS as compared to those of their unmodified counterparts. The main volatile compounds identified in enzymatically modified oils were acetaldehyde, propanal, butanal, pentanal, hexanal, heptanal, octanal and nonanal. However, the main volatile compound found in unmodified oils was hexanal. The contents of propanal and hexanal produced by enzymatically modified oils were significantly higher (p ≤ 0.05) than those produced by their unmodified counterparts. These results suggested that the modified oils were more prone to oxidation than their unmodified counterparts. -- The double bond index (DBI) and methylene bridge index (MBI), represent the number of double bonds and bis allylic methylene bridge positions in PUFA, respectively, were calculated. DBI and MBI of enzymatically modified oils were significantly (p ≤ 0.05) higher than those of their unmodified counterparts. During oxidation of oils, DBI and MBI were decreased. Regression analysis was carried out to correlate various parameters of oxidation (CD, TBARS, hexanal and propanal contents) with DBI and MBI of oils; a negative correlation (r = 0.574-0.975; p ≤ 0.1-0.05) existed between these variables. -- Relative changes of aliphatic to olefinic (Rao) and aliphatic to diallylmethylene (Rad) protons ratios, during oil oxidation, were determined by ¹H NMR spectroscopy. An increase in Rao and Rad values was obtained over the entire storage period. A highly significant correlation (r = 0.930-0.992; p ≤ 0.005) existed between the CD values and changes in Rao and Rad during oxidation of all oils. The correlation coefficient between TBARS and changes in Rao and Rad values was in the range of 0.779 -0.983 (p ≤ 0.05). A high correlation (r = 0.948-0.996; p ≤ 0.005) was found between hexanal content and Rao and Rad of oils. Propanal content was also highly correlated (r = 0.950-0.990; p ≤ 0.005) with Rao and Rad. This suggests that ¹H NMR could be used to simultaneously estimate both primary and secondary oxidation changes in native and enzymatically modified oils

Re-purposing Ac/Ds transgenic system for CRISPR/dCas9 modulation of enhancers and non-coding RNAs in zebrafish

Due to its genetic amenability coupled with recent advances in genome editing, the zebrafish serves as an excellent model to examine the function of both coding and non-coding elements. Recently, the non-coding genome has gained prominence due to its critical role in development and disease. Here, we have re-purposed the Ac/Ds maize transposition system to reliably screen and efficiently characterise zebrafish enhancers, with or without germline propagation. We further utilised the system to stably express guide RNAs in microinjected embryos enabling tissue-specific CRISPR/dCas9-interference (CRISPRi) knockdown of lncRNA and enhancer activity without disrupting the underlying genetic sequence. Our study highlights the utility of Ac/Ds transposition for transient epigenome modulation of non-coding elements in zebrafish

MicroRNA and other non-coding RNAs in Epstein–Barr virus-associated cancers

Simple Summary Epstein-Barr virus (EBV) is associated with a variety of malignancies. In this review, we discuss EBV-encoded microRNAs and ncRNAs and consider how their detection could aid in the diagnosis, prognostication, and monitoring of treatment in patients with EBV-associated malignancies, including classical Hodgkin's lymphoma (cHL), Burkitt lymphoma (BL), diffuse large B-cell lymphoma (DLBCL), nasopharyngeal carcinoma (NPC), and gastric carcinoma (GC). EBV is a direct causative agent in around 1.5% of all cancers. The oncogenic properties of EBV are related to its ability to activate processes needed for cellular proliferation, survival, migration, and immune evasion. The EBV latency program is required for the immortalization of infected B cells and involves the expression of non-coding RNAs (ncRNAs), including viral microRNAs. These ncRNAs have different functions that contribute to virus persistence in the asymptomatic host and to the development of EBV-associated cancers. In this review, we discuss the function and potential clinical utility of EBV microRNAs and other ncRNAs in EBV-associated malignancies. This review is not intended to be comprehensive, but rather to provide examples of the importance of ncRNAs

The impact of a hand hygiene workshop on improving the knowledge of hand hygiene of medical students

Introduction and Objectives: Knowledge of hand hygiene is important for medical students. The aim of this study was to compare the knowledge before and after a workshop on hand hygiene held for medical students at the Faculty of Medicine, General Sir John Kotelawala Defence University, Sri Lanka.Methods: A self-administered, pre-tested validated questionnaire, based on hand hygiene guidelines of the World Health Organization (WHO), was distributed among the medical students before and after conducting a workshop on hand hygiene.Results were assessed by comparing the current guidelines set by the WHO with the knowledge of hand hygiene among the medical students.Results: All 177 students participated in the study before conducting the workshop. There were 104 (58.8%) preclinical and 73 (41.2%) clinical students. Of the 104 preclinical students, the percentage who knew the importance of “My five moments for hand hygiene” approach (hand hygiene before direct contact with patients, after direct contact with patients, before clean/aseptic procedures, after contact with blood/body fluid and after contact with patient’s surrounding) before conducting the workshop were 53.8%, 67.3%, 51.0%, 88.5% and 34.6% respectively. Of the 73 clinical students, the percentage who knew the importance of the “My five moments for hand hygiene” approach before conducting the workshop were 49.3%, 63.0%, 87.7%, 94.5% and 27.4% respectively. Of the 112 students who participated in the workshop, there were 68 (60.7%) preclinical and 44 (39.3%) clinical students. Of the 68 preclinical students, 77.9%, 79.4%, 91.2%, 95.6% and 70.6% knew the importance of the “My five moments for hand hygiene” approach post workshop. Post workshop, the percentage of the 44 clinical students who knew the importance of “My five moments for hand hygiene” approach were 90.9%, 88.6%, 93.2%, 97.7% and 81.8% respectively.Conclusions: The pre workshop knowledge of hand hygiene among the two categories of medical students was not satisfactory. The knowledge on each component of “My five moments for hand hygiene” concept improved to more than 70% after conducting the workshop. </p

First report on \u3cem\u3eHottentotta tamulus\u3c/em\u3e (Scorpiones: Buthidae) from Sri Lanka, and its medical importance

A scorpion species proved to be lethal to humans was recently recorded from Jaffna Peninsula (9°40\u270\u27\u27N 80°0\u270\u27\u27E, mean annual temperature 26.2°C), in the northern dry zone of Sri Lanka. This species is morphologically different from all other known scorpions in Sri Lanka. The species was identified as Hottentotta tamulus (Scorpiones: Buthidae), which is commonly found in Maharashtra, India, the closest mainland to Sri Lanka. Small children and housewives were most of the victims. Soon after sting, the patient develops intense pain at the site of sting followed by numbed sensation. Dominant clinical effects include excessive sweating, agitation and palpitation. Blood pressure of the victim goes up, and if not promptly treated leads to acute heart failure. There is a high risk of spreading of this species to the rest of the country due to transport of goods and sand from the area

Challenging lanthanide relaxation theory: erbium and thulium complexes that show NMR relaxation rates faster than dysprosium and terbium analogues

Measurements of the proton NMR paramagnetic relaxation rates for several series of isostructural lanthanide(III) complexes have been performed in aqueous solution over the field range 1.0 to 16.5 Tesla. The field dependence has been modeled using Bloch–Redfield–Wangsness theory, allowing values for the electronic relaxation time, Tle and the magnetic susceptibility, μeff, to be estimated. Anomalous relaxation rate profiles were obtained, notably for erbium and thulium complexes of low symmetry 8-coordinate aza-phosphinate complexes. Such behaviour challenges accepted theory and can be interpreted in terms of changes in Tle values that are a function of the transient ligand field induced by solvent collision and vary considerably between Ln3+ ions, along with magnetic susceptibilities that deviate significantly from free-ion values

Exploring natural resources for sustainable management of ecosystems future challenges for control and management of Xyleborus fornicatus eichh. (Coleoptera Scolytidae), the shot-hole borer of tea in Sri Lanka

In view of the highly diverse genetic base of the seedling tea plants, though cultivated as a monocrop,along with shade trees and surrounding forests, provided a reasonably stable ecosystem then. Withthe introduction of high yielding vegetatively propagated tea during 1950's, a significant change in thedistribution and population densities of pests has been taken place. Shot-hole borer is one such pestand since then it has become the most serious and damaging pest of tea in Sri Lanka. Control hasbeen a difficult task as a result of its' wide distribution from near sea level up to 1500m amsl and theconcealed habit virtually protected from parasites and predators. Biological control usingentomopathogenic fungus, Beauvaria bassiana Vuillemin (Balsomo ) is being viewed as anenvironmentally friendly alternative to chemical control in the light of growing concern on the usage of pesticides and since oflate, the detection of pesticide residues in made tea. Preliminary investigationswere carried out with a view to find out a suitable local strain/s of the fungus for use against this pest.Laboratory studies have shown that strains of this fungus isolated from a tea garden in Talawakelle(Nuwera Eliya District) and a home garden in Welimada (Badulla District) are highly pathogenic toshot-hole borer imparting more than 90% mortality. A potential exists for using the locally availablenatural resources like entomopathogenic fungi for the management of key pests in a compatible andecologically acceptable manner. This forms the basis for Integrated Pest Management (lPM) approachof key pests. These efforts will promote and ensure the sustainable development of the tea ccosyst;m

The application of ANFIS prediction models for thermal error compensation on CNC machine tools

Thermal errors can have significant effects on CNC machine tool accuracy. The errors come from thermal deformations of the machine elements caused by heat sources within the machine structure or from ambient temperature change. The effect of temperature can be reduced by error avoidance or numerical compensation. The performance of a thermal error compensation system essentially depends upon the accuracy and robustness of the thermal error model and its input measurements. This paper first reviews different methods of designing thermal error models, before concentrating on employing an adaptive neuro fuzzy inference system (ANFIS) to design two thermal prediction models: ANFIS by dividing the data space into rectangular sub-spaces (ANFIS-Grid model) and ANFIS by using the fuzzy c-means clustering method (ANFIS-FCM model). Grey system theory is used to obtain the influence ranking of all possible temperature sensors on the thermal response of the machine structure. All the influence weightings of the thermal sensors are clustered into groups using the fuzzy c-means (FCM) clustering method, the groups then being further reduced by correlation analysis. A study of a small CNC milling machine is used to provide training data for the proposed models and then to provide independent testing data sets. The results of the study show that the ANFIS-FCM model is superior in terms of the accuracy of its predictive ability with the benefit of fewer rules. The residual value of the proposed model is smaller than ±4 μm. This combined methodology can provide improved accuracy and robustness of a thermal error compensation system