1,080 research outputs found
Wall mediated transport in confined spaces: Exact theory for low density
We present a theory for the transport of molecules adsorbed in slit and cylindrical nanopores at low density, considering the axial momentum gain of molecules oscillating between diffuse wall reflections. Good agreement with molecular dynamics simulations is obtained over a wide range of pore sizes, including the regime of single-file diffusion where fluid-fluid interactions are shown to have a negligible effect on the collective transport coefficient. We show that dispersive fluid-wall interactions considerably attenuate transport compared to classical hard sphere theory
Thermodynamic entropy production fluctuation in a two dimensional shear flow model
We investigate fluctuations in the momentum flux across a surface
perpendicular to the velocity gradient in a stationary shear flow maintained by
either thermostated deterministic or by stochastic boundary conditions. In the
deterministic system the Gallavotti-Cohen (GC)relation for the probability of
large deviations, which holds for the phase space volume contraction giving the
Gibbs ensemble entropy production, never seems to hold for the flux which gives
the hydrodynamic entropy production. In the stochastic case the GC relation is
found to hold for the total flux, as predicted by extensions of the GC theorem
but not for the flux across part of the surface. The latter appear to satisfy a
modified GC relation. Similar results are obtained for the heat flux in a
steady state produced by stochastic boundaries at different temperatures.Comment: 9 postscript figure
Multiplex SNP Discrimination
Multiplex hybridization reactions of perfectly matched duplexes and duplexes containing a single basepair mismatch (SNPs) were investigated on DNA microarrays. Effects of duplex length, G-C percentage, and relative position of the SNP on duplex hybridization and SNP resolution were determined. Our theoretical model of multiplex hybridization accurately predicts observed results and implicates target concentration as a critical variable in multiplex SNP detection
Comparison of work fluctuation relations
We compare two predictions regarding the microscopic fluctuations of a system
that is driven away from equilibrium: one due to Crooks [J. Stat. Phys. 90,
1481 (1998)] which has gained recent attention in the context of nonequilibrium
work and fluctuation theorems, and an earlier, analogous result obtained by
Bochkov and Kuzovlev [Zh. Eksp. Teor. Fiz. 72(1), 238247 (1977)]. Both results
quantify irreversible behavior by comparing probabilities of observing
particular microscopic trajectories during thermodynamic processes related by
time-reversal, and both are expressed in terms of the work performed when
driving the system away from equilibrium. By deriving these two predictions
within a single, Hamiltonian framework, we clarify the precise relationship
between them, and discuss how the different definitions of work used by the two
sets of authors gives rise to different physical interpretations. We then
obtain a extended fluctuation relation that contains both the Crooks and the
Bochkov-Kuzovlev results as special cases.Comment: 14 pages with 1 figure, accepted for publication in the Journal of
Statistical Mechanic
On the Fluctuation Relation for Nose-Hoover Boundary Thermostated Systems
We discuss the transient and steady state fluctuation relation for a
mechanical system in contact with two deterministic thermostats at different
temperatures. The system is a modified Lorentz gas in which the fixed
scatterers exchange energy with the gas of particles, and the thermostats are
modelled by two Nos\'e-Hoover thermostats applied at the boundaries of the
system. The transient fluctuation relation, which holds only for a precise
choice of the initial ensemble, is verified at all times, as expected. Times
longer than the mesoscopic scale, needed for local equilibrium to be settled,
are required if a different initial ensemble is considered. This shows how the
transient fluctuation relation asymptotically leads to the steady state
relation when, as explicitly checked in our systems, the condition found in
[D.J. Searles, {\em et al.}, J. Stat. Phys. 128, 1337 (2007)], for the validity
of the steady state fluctuation relation, is verified. For the steady state
fluctuations of the phase space contraction rate \zL and of the dissipation
function \zW, a similar relaxation regime at shorter averaging times is
found. The quantity \zW satisfies with good accuracy the fluctuation relation
for times larger than the mesoscopic time scale; the quantity \zL appears to
begin a monotonic convergence after such times. This is consistent with the
fact that \zW and \zL differ by a total time derivative, and that the tails
of the probability distribution function of \zL are Gaussian.Comment: Major revision. Fig.10 was added. Version to appear in Journal of
Statistical Physic
Stationary and Transient Work-Fluctuation Theorems for a Dragged Brownian Particle
Recently Wang et al. carried out a laboratory experiment, where a Brownian
particle was dragged through a fluid by a harmonic force with constant velocity
of its center. This experiment confirmed a theoretically predicted work related
integrated (I) Transient Fluctuation Theorem (ITFT), which gives an expression
for the ratio for the probability to find positive or negative values for the
fluctuations of the total work done on the system in a given time in a
transient state. The corresponding integrated stationary state fluctuation
theorem (ISSFT) was not observed. Using an overdamped Langevin equation and an
arbitrary motion for the center of the harmonic force, all quantities of
interest for these theorems and the corresponding non-integrated ones (TFT and
SSFT, resp.) are theoretically explicitly obtained in this paper. While the
(I)TFT is satisfied for all times, the (I)SSFT only holds asymptotically in
time. Suggestions for further experiments with arbitrary velocity of the
harmonic force and in which also the ISSFT could be observed, are given. In
addition, a non-trivial long-time relation between the ITFT and the ISSFT was
discovered, which could be observed experimentally, especially in the case of a
resonant circular motion of the center of the harmonic force.Comment: 20 pages, 3 figure
Fluctuation formula for nonreversible dynamics in the thermostated Lorentz gas
We investigate numerically the validity of the Gallavotti-Cohen fluctuation
formula in the two and three dimensional periodic Lorentz gas subjected to
constant electric and magnetic fields and thermostated by the Gaussian
isokinetic thermostat. The magnetic field breaks the time reversal symmetry,
and by choosing its orientation with respect to the lattice one can have either
a generalized reversing symmetry or no reversibility at all. Our results
indicate that the scaling property described by the fluctuation formula may be
approximately valid for large fluctuations even in the absence of
reversibility.Comment: 6 pages, 6 figure
Modeling molecular transport in slit pores
We examine the transport of methane in microporous carbon by performing equilibrium and nonequilibrium molecular dynamics simulations over a range of pore sizes, densities, and temperatures. We interpret these simulation results using two models of the transport process. At low densities, we consider a molecular flow model, in which intermolecular interactions are neglected, and find excellent agreement between transport diffusion coefficients determined from simulation, and those predicted by the model. Simulation results indicate that the model can be applied up to fluid densities of the order to 0.1-1 nm(-3). Above these densities, we consider a slip flow model, combining hydrodynamic theory with a slip condition at the solid-fluid interface. As the diffusion coefficient at low densities can be accurately determined by the molecular flow model, we also consider a model where the slip condition is supplied by the molecular flow model. We find that both density-dependent models provide a useful means of estimating the transport coefficient that compares well with simulation. (C) 2004 American Institute of Physics
Deep-water macroalgae from the Canary Islands: new records and biogeographical relationships
Due to the geographical location and paleobiogeography of the Canary Islands, the
seaweed flora contains macroalgae with different distributional patterns. In this contribution, the biogeographical relations of several new records of deep-water macroalgae recently collected around the Canarian archipelago are discussed. These are Bryopsidella neglecta (Berthotd) Rietema,Discosporangium mesarthrocarpum (Meneghini) Hauck, Hincksia onslowensis (Amsler et Kapraun)P.C. Silva, Syringoderma floridana Henry, Peyssonnelia harveyana J. Agardh, Cryptonemia seminervis(C. Agardh) J. Agardh, Botryodadia wynnei Ballantine, Gloiocladia blomquistii (Searles) R. E.Norris, PIahchrysis peltata (W. R. Taylor) P. Huv4 et H. Huv4, Leptofauchea brasiliensis Joly, and Sarcodiotheca divaricata W. R. Taylor. These new records, especially those in the Florideophyceae,support the strong affinity of the Canary Islands seaweed flora with the warm-temperate Mediterranean-Atlantic region. Some species are recorded for the first time from the east coast of the Atlantic Ocean, enhancing the biogeographic relations of the Canarian marine flora with that of the western Atlantic regions
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The impact generated by public and charity-funded research in the UK: A systematic literature review
Objective: To identify, synthesize and critically assess the empirical evidence of the impact generated by public and charity funded health research in the United Kingdom.
Methods: We conducted a systematic literature review of the empirical evidence published in English in peer-reviewed journals between 2006 and 2017. Studies meeting the inclusion criteria were selected and their findings were analysed using the Payback Framework into five main categories: knowledge, benefits to future research and research use, benefits from informing policy and product development, health and health sector benefits and broader economic benefits. We assessed the studies for risk of selection, reporting and funding bias.
Results: Thirteen studies met the inclusion criteria. The majority of the studies (10 out of 13) assessed impact at multiple domains including the main 5 key themes of the Payback Framework. All of them showed a positive impact of funded research on outcomes. Of those studies, one presented low risk of bias (8%), 6 studies were classified as presenting moderate risk of bias (46%) and 6 studies presented high risk of bias (46%).
Conclusions: Empirical evidence on the impact of public and charity funded research is still limited and subject to funding and selection bias. More work is needed to establish the causal effects of funded research on academic outcomes, policy, practice and the broader economy
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